Metagenome Family F090039

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090039
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	92 residues
Representative Sequence	MASQNPAADLPSHASSLTTLAEQLRDGPLQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH
Number of Associated Samples	87
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.48 %
% of genes near scaffold ends (potentially truncated)	32.41 %
% of genes from short scaffolds (< 2000 bps)	84.26 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.296 % of family members)
Environment Ontology (ENVO)	Unclassified (36.111 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.444 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.29% β-sheet: 0.00% Coil/Unstructured: 34.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02518	HATPase_c	28.70
PF02754	CCG	10.19
PF13183	Fer4_8	3.70
PF13534	Fer4_17	1.85
PF00501	AMP-binding	0.93
PF14518	Haem_oxygenas_2	0.93
PF04349	MdoG	0.93
PF13632	Glyco_trans_2_3	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	10.19
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	10.19
COG3131	Periplasmic glucan biosynthesis protein OpgG	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.67 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	35.19 %
Unclassified	root	N/A	16.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.41 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	7.41 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.41 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	4.63 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.41 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	2.78 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1.85 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.41 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	2.78 %
unclassified Cupriavidus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus	1.85 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.41 %
Burkholderia lata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia lata	2.78 %
Cupriavidus sp. WS	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. WS	1.85 %
Variovorax sp. WDL1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102135845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	790	Open in IMG/M
3300004114\|Ga0062593_100092205	All Organisms → cellular organisms → Bacteria	2100	Open in IMG/M
3300004114\|Ga0062593_100609053	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300004463\|Ga0063356_100836012	All Organisms → cellular organisms → Bacteria → Proteobacteria	1290	Open in IMG/M
3300004463\|Ga0063356_105689876	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300004643\|Ga0062591_101094922	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300005093\|Ga0062594_101368865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	716	Open in IMG/M
3300005334\|Ga0068869_100124831	All Organisms → cellular organisms → Bacteria → Proteobacteria	1973	Open in IMG/M
3300005336\|Ga0070680_100050951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3377	Open in IMG/M
3300005336\|Ga0070680_100279817	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300005336\|Ga0070680_101618478	Not Available	561	Open in IMG/M
3300005341\|Ga0070691_10369225	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300005343\|Ga0070687_100575171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	770	Open in IMG/M
3300005438\|Ga0070701_10097931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. WDL1	1619	Open in IMG/M
3300005444\|Ga0070694_100153451	All Organisms → cellular organisms → Bacteria → Proteobacteria	1684	Open in IMG/M
3300005444\|Ga0070694_101749550	Not Available	529	Open in IMG/M
3300005545\|Ga0070695_100075853	All Organisms → cellular organisms → Bacteria	2213	Open in IMG/M
3300005578\|Ga0068854_101340895	All Organisms → cellular organisms → Bacteria → Proteobacteria	645	Open in IMG/M
3300005719\|Ga0068861_101051199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	780	Open in IMG/M
3300005840\|Ga0068870_11251629	Not Available	539	Open in IMG/M
3300006844\|Ga0075428_100601101	Not Available	1175	Open in IMG/M
3300006844\|Ga0075428_100738067	All Organisms → cellular organisms → Bacteria → Proteobacteria	1048	Open in IMG/M
3300006845\|Ga0075421_100810194	All Organisms → cellular organisms → Bacteria → Proteobacteria	1077	Open in IMG/M
3300006846\|Ga0075430_100199209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1663	Open in IMG/M
3300006854\|Ga0075425_100023972	All Organisms → cellular organisms → Bacteria → Proteobacteria	6714	Open in IMG/M
3300006904\|Ga0075424_102594511	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300007004\|Ga0079218_10176816	All Organisms → cellular organisms → Bacteria → Proteobacteria	1597	Open in IMG/M
3300007004\|Ga0079218_10191619	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300007004\|Ga0079218_11769589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	690	Open in IMG/M
3300007004\|Ga0079218_12039751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	657	Open in IMG/M
3300007076\|Ga0075435_100262660	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300009147\|Ga0114129_11735668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	761	Open in IMG/M
3300009148\|Ga0105243_11101065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	803	Open in IMG/M
3300009156\|Ga0111538_10093233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3829	Open in IMG/M
3300009162\|Ga0075423_12900731	Not Available	525	Open in IMG/M
3300009176\|Ga0105242_12398915	Not Available	575	Open in IMG/M
3300009609\|Ga0105347_1411714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	582	Open in IMG/M
3300011430\|Ga0137423_1110470	All Organisms → cellular organisms → Bacteria → Proteobacteria	822	Open in IMG/M
3300011432\|Ga0137428_1215720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. WS	568	Open in IMG/M
3300011443\|Ga0137457_1185904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	702	Open in IMG/M
3300012897\|Ga0157285_10034979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1154	Open in IMG/M
3300012898\|Ga0157293_10179120	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300012900\|Ga0157292_10390116	Not Available	525	Open in IMG/M
3300012900\|Ga0157292_10396350	Not Available	522	Open in IMG/M
3300012905\|Ga0157296_10025684	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300012906\|Ga0157295_10372895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	524	Open in IMG/M
3300012910\|Ga0157308_10004303	All Organisms → cellular organisms → Bacteria	2720	Open in IMG/M
3300012916\|Ga0157310_10077962	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300014326\|Ga0157380_11566685	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300015201\|Ga0173478_10325398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	707	Open in IMG/M
3300015371\|Ga0132258_11311150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1830	Open in IMG/M
3300018469\|Ga0190270_10088840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2323	Open in IMG/M
3300018469\|Ga0190270_13408390	Not Available	504	Open in IMG/M
3300018481\|Ga0190271_10000467	All Organisms → cellular organisms → Bacteria → Proteobacteria	20468	Open in IMG/M
3300018481\|Ga0190271_11269450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	857	Open in IMG/M
3300018481\|Ga0190271_12986185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. WS	568	Open in IMG/M
3300019356\|Ga0173481_10002874	All Organisms → cellular organisms → Bacteria → Proteobacteria	4397	Open in IMG/M
3300019361\|Ga0173482_10638177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia lata	541	Open in IMG/M
3300022886\|Ga0247746_1089123	All Organisms → cellular organisms → Bacteria → Proteobacteria	745	Open in IMG/M
3300023102\|Ga0247754_1102107	All Organisms → cellular organisms → Bacteria → Proteobacteria	694	Open in IMG/M
3300025908\|Ga0207643_10811556	Not Available	606	Open in IMG/M
3300025912\|Ga0207707_11328800	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300025917\|Ga0207660_10013104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5428	Open in IMG/M
3300025917\|Ga0207660_10093596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2233	Open in IMG/M
3300025918\|Ga0207662_10032559	All Organisms → cellular organisms → Bacteria	3036	Open in IMG/M
3300025935\|Ga0207709_11109478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	650	Open in IMG/M
3300026075\|Ga0207708_10130186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1967	Open in IMG/M
3300026116\|Ga0207674_11396845	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300027682\|Ga0209971_1188123	Not Available	508	Open in IMG/M
3300027695\|Ga0209966_1052588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	869	Open in IMG/M
3300027876\|Ga0209974_10169780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	795	Open in IMG/M
3300027886\|Ga0209486_10065218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1857	Open in IMG/M
3300027886\|Ga0209486_10865446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	597	Open in IMG/M
3300027907\|Ga0207428_10859772	Not Available	642	Open in IMG/M
3300027909\|Ga0209382_10667947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1122	Open in IMG/M
3300028380\|Ga0268265_10009433	All Organisms → cellular organisms → Bacteria → Proteobacteria	6591	Open in IMG/M
3300028587\|Ga0247828_10823907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	591	Open in IMG/M
3300028809\|Ga0247824_10477689	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300028812\|Ga0247825_10191897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1411	Open in IMG/M
3300028812\|Ga0247825_10469814	All Organisms → cellular organisms → Bacteria → Proteobacteria	893	Open in IMG/M
3300028812\|Ga0247825_11407796	Not Available	511	Open in IMG/M
3300031226\|Ga0307497_10011245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2552	Open in IMG/M
3300031226\|Ga0307497_10614400	Not Available	551	Open in IMG/M
3300031538\|Ga0310888_10133281	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300031547\|Ga0310887_10183995	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300031548\|Ga0307408_100325068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1297	Open in IMG/M
3300031820\|Ga0307473_10074583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1715	Open in IMG/M
3300031847\|Ga0310907_10546008	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300031854\|Ga0310904_10573471	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300031854\|Ga0310904_11322403	Not Available	523	Open in IMG/M
3300031858\|Ga0310892_10560589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	769	Open in IMG/M
3300031908\|Ga0310900_10422354	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018	Open in IMG/M
3300031940\|Ga0310901_10446594	Not Available	571	Open in IMG/M
3300031943\|Ga0310885_10760139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia lata	548	Open in IMG/M
3300031944\|Ga0310884_10089263	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300032000\|Ga0310903_10346814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	743	Open in IMG/M
3300032003\|Ga0310897_10236764	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300032013\|Ga0310906_10186915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1245	Open in IMG/M
3300032017\|Ga0310899_10657132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia lata	529	Open in IMG/M
3300032144\|Ga0315910_10098116	All Organisms → cellular organisms → Bacteria	2150	Open in IMG/M
3300032157\|Ga0315912_10041357	All Organisms → cellular organisms → Bacteria → Proteobacteria	3668	Open in IMG/M
3300032157\|Ga0315912_10161617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1756	Open in IMG/M
3300032157\|Ga0315912_10386988	Not Available	1107	Open in IMG/M
3300032179\|Ga0310889_10304734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	769	Open in IMG/M
3300032180\|Ga0307471_100619839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1242	Open in IMG/M
3300032205\|Ga0307472_100343437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1222	Open in IMG/M
3300032211\|Ga0310896_10512238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	659	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.22%
Host-Associated	Host-Associated	27.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.52%
Plants	Host-Associated → Plants	27.78%
Aquatic	Environmental → Aquatic	3.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.04%
Sediment	Environmental → Aquatic → Sediment	3.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.74%
Loam	Environmental → Terrestrial → Soil → Loam	12.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.30%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	19.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	19.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.56%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.56%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.63%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1021358452	3300000956	Soil	MANETPALLAASATDLAEQLRDGPLQRLVELQAQTAAIADRLAKGTPARIEDVAELVRLSVAAMEHFQHFTRELGVVLRELTDGQHPRH*
Ga0062593_1000922052	3300004114	Soil	MASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAGVLRELTDGERHPH*
Ga0062593_1006090532	3300004114	Soil	MASQDLVLDASGTRSPLGALAEQLRDGPLQRLVELQMQTTSLADRLAEGAPAKIEDVEQLVRLSMAAMQHFNAFTRELSGVLRQLTDAAQQSH*
Ga0063356_1008360122	3300004463	Arabidopsis Thaliana Rhizosphere	MASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGVPAKIEDVQQLVRLSLSAMEHFNVFTRELAGVLRELTDGERHPH*
Ga0063356_1056898761	3300004463	Arabidopsis Thaliana Rhizosphere	MASRDHVVELPSARSSIAGLAEQLRDGPLQRLVELQMQTTALASHLADGAPAKIEDVEQLVRLSISAMQHFNA
Ga0062591_1010949222	3300004643	Soil	MASQNPAADVPSTASSLTTLAEQLRDGPLQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH*
Ga0062594_1013688651	3300005093	Soil	SSEHARPDTGPNPRMASQNPRLDASSAPSSLGELAEQLRDGPLQRLVELQMQTTALADRLAQGAPAKIEDVEQLVRLSVAAMQHFHAFTRELSGVLRELTDAERLSH*
Ga0068869_1001248312	3300005334	Miscanthus Rhizosphere	MASQNPRLDASSAPSSLGELAEQLRDGPLQRLVELQMQTTALADRLAQGAPAKIEDVEQLVRLSVAAMQHFHAFTRELSGVLRELTDAERLSH*
Ga0070680_1000509513	3300005336	Corn Rhizosphere	MASQNPHLDASSAPSSLGALAEQLRDGPLQRLVELQMQTTALADRLAQGAPPKIADIEQLVRLSMAAMQHFNAFTRELSGVLRELTDAERQSH*
Ga0070680_1002798172	3300005336	Corn Rhizosphere	MASQNPRLGSTSAPSSLGALAEQLRDGPLQRLVELQIQTTALADRLAQGAPAKIEDVEQLVRLSIAAMQHFNAFTRELGGVLRELTDAERQSH*
Ga0070680_1016184781	3300005336	Corn Rhizosphere	MASRDHVVELPSARSSIAGLAEQLRDGPLQRLVELQMQTTALASRLADGAPAKIEDVEQLVRLSISAMQHFNAFTVEFAAVLRDLTDDRRQPH*
Ga0070691_103692252	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MANQDSAVEALSAPSSLTALAEQLRDGPLQRLVELQIETTALANRLGDGAPARIEDVEHLVRLSVSAMEHFNAFTRGLATVLRDLTDAKRQPH*
Ga0070687_1005751712	3300005343	Switchgrass Rhizosphere	MASQNPAADLPSHASSLTTLAEQLRDGALQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPH*
Ga0070701_100979312	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MASQNPRLDASSAPSSLGELAEQLRDGPLQRLVELQMQTTALADRLAQGAPAKIEDVEQLVRLSVAAMQHFHAF
Ga0070694_1001534511	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SLGELAEQLRDGPLQRLVELQMQTTALADRLAQGAPAKIEDVEQLVRLSVAAMQHFHAFTRELSGVLRELTDAERLSH*
Ga0070694_1017495501	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MASRDHVVELPSARYYIAGLAEQLRDGPLQRLVELQMQTTALASRLADGAPAKIEDVEQLVRLSISAMQHFNAFTVEFAAVLRDLTDDRRQPH*
Ga0070695_1000758533	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	QDSAVEALSAPSSLTALAEQLRDGPLQRLVELQIETTALANRLGDGAPARIEDVEHLVRLSVSAMEHFNAFTRGLATVLRDLTDAKRQPH*
Ga0068854_1013408951	3300005578	Corn Rhizosphere	MASQNPRLDASSAPSSLGELAEQLRDGPLQRLVELQMQTTALADRLAQGAPAKIEDVEQLVRLSIAAMQHFNAFTRELGGVLRELTDAERQSH*
Ga0068861_1010511992	3300005719	Switchgrass Rhizosphere	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH*
Ga0068870_112516291	3300005840	Miscanthus Rhizosphere	IVPNPGMASQNPAADVPSTASSLTTLAEQLRDGPLQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH*
Ga0075428_1006011011	3300006844	Populus Rhizosphere	MRHPNIVSNSGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAATLRELTDAEQRHEH*
Ga0075428_1007380671	3300006844	Populus Rhizosphere	MASQNPAANLPSSASSLTTLAEQLRDGPLQRLVELQIETTALANRLGDGAPAKIEDVQQLVRLSLSAMEHFN
Ga0075421_1008101942	3300006845	Populus Rhizosphere	MRHPNIVSNPGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAATLRELTDAEQRHEH*
Ga0075430_1001992092	3300006846	Populus Rhizosphere	MGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAATLRELTDAEQRHEH*
Ga0075425_1000239721	3300006854	Populus Rhizosphere	MANQDSAVEALSAPSSLTALAEQLRDGPLQRLVELQIETTALANRLGDGAPARIEDVEHLVRLSVSAMEHFNAFTRGLATVLRD
Ga0075424_1025945112	3300006904	Populus Rhizosphere	MRHPTTVPNPRMASQDLVLDASGARSPLGALAEQLRDGPLQRLVELQMQTTSLADRLAEGAPAKIEDVEQLVRLSMAA
Ga0079218_101768162	3300007004	Agricultural Soil	MATQDTPHCAPAAPSALTALAEQLRDGPLQRLVELQIETMALANRVTDGPPSHDDLERLVRLSVSAMEHFHAFTREFAAVLRELTDAHGHPH*
Ga0079218_101916192	3300007004	Agricultural Soil	MASQNSALEFPIAASSLDTLAEQLRDGPLQRLVELQIETTALANRLGDGAPASIEDIEKLVRLSVAAMEHFNAFTRELAATLHELTDAERGQH*
Ga0079218_117695892	3300007004	Agricultural Soil	ENTAVHFPGATDLAEQLRDGPLQRIVELQTQTAAIAERLADGAPARIEDVEQLVRLSLSAMEHFHQFTRELAAVLRELTDGQHPRH*
Ga0079218_120397512	3300007004	Agricultural Soil	MTTQNFALFASSAPSSLTALAEQLRYGPLQRLVELQIQTTALANRSTAGVPTIEDLEQLVRLSVSAMEHFNAFTREFAAALRQLTDAREPPH*
Ga0075435_1002626602	3300007076	Populus Rhizosphere	MANQDSAVEALSAPSSLTALAEQLRDGPLQRLVELQIETTALANRLGDGAPARIEDVEHLVRLSVSAMEHFNAFTRGLATVLRDLTDARRQPH*
Ga0114129_117356681	3300009147	Populus Rhizosphere	MGSQNPALKSPSALSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAATLRELTDAEQRHEH*
Ga0105243_111010651	3300009148	Miscanthus Rhizosphere	MASQNPRLGSTSAPSSLGALAEQLRDGPLQRLVELQLQTTPLADRLAQGAPAKIEDVEQLVRLSIAAMQHFNAFTRELGGVLRELTDAERQSH*
Ga0111538_100932333	3300009156	Populus Rhizosphere	MASQNSAADLPSQASSLTTLAEQLRDGPLQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH*
Ga0075423_129007311	3300009162	Populus Rhizosphere	GMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAATLRELTDAEQRHEH*
Ga0105242_123989152	3300009176	Miscanthus Rhizosphere	MASQNPRLDASSAPSSLGELAEQLRDGPLQRLVELQMQTTALADRLAQGAPAKIEDVEQLVRLSVAAMQHFNAFTRELGGVLRELTDAERQSH*
Ga0105347_14117141	3300009609	Soil	PADSEHADFSTTAGPGMASENSALADSSAPSSLTALAEQLRDGPLQRLVELQVQTTALANRSTGNPLGIEDLEQLVRLSVSAMEHFNAFTREFAAVLRELTDAQEPPH*
Ga0137423_11104702	3300011430	Soil	MASQNSALADSSARSSLTALAEQLRDGPLQRLVELQIQTTALANRSTESPLGIEDLEQLVRLSVSAMEHFNAFTRELAAVLREITDVQEPPH*
Ga0137428_12157201	3300011432	Soil	MASQNSALVDSSAPSPLTALAEQLRDGPLQRLVELQIQTMALANRSTGSPLGIEDLEQLVRLSVSAMEHFNAFTREFAAVLGELTDAQEPPH
Ga0137457_11859041	3300011443	Soil	MASQDSAQVDSSAPSSLTTLTEQLRDGPLQRLVELQIQTTALANRSPANPPTIEDLEQLVRLSVSAMEHFNAFTREFATVLRELTDAREPPH*
Ga0157309_100985761	3300012895	Soil	MASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGVPAKIEDVQQLVRLSLS
Ga0157285_100349792	3300012897	Soil	MASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGVPAKIEDVQQLVRLSLSAMEHFNVFTRELAAVLRELTDAQRHPH*
Ga0157293_101791202	3300012898	Soil	MASQDLVLDASGTRSPLGALAEQLRDGPLQRLVELQMQTTSLADRLAEGAPAKIEDVEQLVRLSMAAMQHFNAFTRELS
Ga0157292_103901162	3300012900	Soil	MASQNPAADLPSHASSLTTLAEQLRDGALQRLVELQIETTALADRLSDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAAVLRELTDAERHPH*
Ga0157292_103963501	3300012900	Soil	MASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGVPAKIEDVQQLVRLSLSAMEHFNVFTRELAGVLRELTDG
Ga0157296_100256842	3300012905	Soil	MASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGVPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPH*
Ga0157295_103728951	3300012906	Soil	RMASQDLVLDASGTRSPLGALAEQLRDGPLQRLVELQMQTTSLADRLAEGAPAKIEDVEQLVRLSMAAMQHFNAFTRELSGVLRQLTDAAQQSH*
Ga0157308_100043032	3300012910	Soil	MASQNPAADLPSHASSLTTLAEQLRDGPLQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPQ*
Ga0157310_100779622	3300012916	Soil	MASQNPAADLPSHASSLTTLAEHLRDGPLQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPH*
Ga0157380_115666851	3300014326	Switchgrass Rhizosphere	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQIETTALADRLDDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAAVLRELTDAQRHSH*
Ga0173478_103253981	3300015201	Soil	EMASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGVPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPH*
Ga0132258_113111503	3300015371	Arabidopsis Rhizosphere	MANKDSAVEALSAPSSLTALAEQLRDGPLQRLVELQIETTALANRLGDGAPARIEDVEHLVRLSVSAMEHFNAFTRGLATVLRDLTDARRQPH*
Ga0190270_100888402	3300018469	Soil	MASQDSALADSTAPSSLGALAEQLRDGPLQKLVELQIQTTALANRSTGSPLAIEDLDQLVRLSVAAMEHFNAFTREFAAVLRELTDAREPPH
Ga0190270_134083901	3300018469	Soil	MASENPALRVSRATSSLTDLAEQLRDGPLQRLVELQMQTTAIADRLTEGSPARVEDVEQLVRLSVSAM
Ga0190271_100004672	3300018481	Soil	MASQDSALADSTAPSPLGALAEQLRDGPLQKLVELQIQTTALANRSTGSPLAIEDLDQLVRLSVAAMEHFNAFTREFAAVLRELTDAREPPH
Ga0190271_112694501	3300018481	Soil	MASQDTPLPAPTAPSTLSALAEQLRDGPLQRLVELQIETTALANRLSDGPPGQLDDLEHLVRLSVSAMEHFNAFTREFATALRELTDAHGHPH
Ga0190271_129861851	3300018481	Soil	MASQDTPLLAPTAPSTLTALVEQLRDGPLQRLVELQIETTALANRLTDGPPGQLDDLEHLVRLSVSAMEHFNAFTREFAAALRELTDAHGHPH
Ga0173481_100028742	3300019356	Soil	MASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAGVLRELTDGERHPH
Ga0173482_106381772	3300019361	Soil	MASQNPAADLPSHASSLTTLAEQLRDGALQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAAVLRELTDAQRHSH
Ga0247746_10891231	3300022886	Soil	MASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAGVLRELTDGER
Ga0247754_11021071	3300023102	Soil	MASQNPAADLPSNASSLTTLAEQLRDGPLERLVELQIETTALADRLSDGAPAKIEDVQQLVRLSLSAMEHFNVFTRE
Ga0207643_108115562	3300025908	Miscanthus Rhizosphere	MASQNPAADLPSHASSLTTLAEQLRDGPLQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH
Ga0207707_113288002	3300025912	Corn Rhizosphere	MASQNPHLDASSAPSSLGALAEQLRDGPLQRLVELQMQTTALADRLAQGAPPKIADIEQLVRLSMAAMQHF
Ga0207660_100131043	3300025917	Corn Rhizosphere	MASQNPHLDASSAPSSLGALAEQLRDGPLQRLVELQMQTTALADRLAQGAPPKIADIEQLVRLSMAAMQHFNAFTRELSGVLRELTDAERQSH
Ga0207660_100935963	3300025917	Corn Rhizosphere	MASQNPRLGSTSAPSSLGALAEQLRDGPLQRLVELQIQTTALADRLAQGAPAKIEDVEQLVRLSIAAMQHFNAFTRELGGVLRELTDAERQSH
Ga0207662_100325594	3300025918	Switchgrass Rhizosphere	MASQNPAADLPSHASSLTTLAEQLRDGALQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAS
Ga0207709_111094781	3300025935	Miscanthus Rhizosphere	SLGELAEQLRDGPLQRLVELQMQTTALADRLAQGAPAKIEDVEQLVRLSVAAMQHFHAFTRELSGVLRELTDAERLSH
Ga0207708_101301862	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MASRDHVVELPSARSSIAGLAEQLRDGPLQRLVELQMQTAALASRLADGAPAKIEDVEQLVRLSISAMQHFNAFTVEFAAVLRDLTDDRRQPH
Ga0207674_113968451	3300026116	Corn Rhizosphere	MASQNPAADVPSTASSLTTLAEQLRDGPLQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRE
Ga0209971_11881231	3300027682	Arabidopsis Thaliana Rhizosphere	ISEMASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGVPAKIEDVQQLVRLSLSAMEHFNVFTRELAGVLRELTDGERHPH
Ga0209966_10525882	3300027695	Arabidopsis Thaliana Rhizosphere	MPRPDTVPNPEMASRDHVVELPSARSSIAGLAEQLRDGPLQRLVELQMQTTALASHLADGAPAKIEDVEQLVRLSISAMQHFNAFTVEFAAVLRDLTDDRRQPH
Ga0209974_101697802	3300027876	Arabidopsis Thaliana Rhizosphere	HARPDIVSISEMASQDSAADIPSEASSLTTLAEQLRDGPLQRLVELQTATTALANRLGDGVPAKIEDVQQLVRLSLSAMEHFNVFTRELAGVLRELTDGERHPH
Ga0209486_100652183	3300027886	Agricultural Soil	MARADSAPDAQSPLPSLTTLAKQLRDGPLQRLVELQTETTALSDRLANGAPARIEDVEQLVRLSLSAMQHFSAFTRELAAVLRELTDAKRHPH
Ga0209486_108654461	3300027886	Agricultural Soil	ENTAVHFPGATDLAEQLRDGPLQRIVELQTQTAAIAERLADGAPARIEDVEQLVRLSLSAMEHFHQFTRELAAVLRELTDGQHPRH
Ga0207428_108597722	3300027907	Populus Rhizosphere	MASQNPAADVPSTASSLTTLAEQLRDGPLQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH
Ga0209382_106679472	3300027909	Populus Rhizosphere	MRHPNIVSNSGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAATLRELTDAEQRHEH
Ga0268265_100094334	3300028380	Switchgrass Rhizosphere	MASQNPRLDASSAPSSLGELAEQLRDGPLQRLVELQMQTTALADRLAQGAPAKIEDVEQLVRLSVAAMQHFHAFTRELSGVLRELTDAERLSH
Ga0247828_108239072	3300028587	Soil	MDSQNPAADLPSHASSLTTLAEQLRDGPLQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPH
Ga0247824_104776892	3300028809	Soil	MASQNPILEFPSTPSSLDTLAEQLRDGPLQRLVELQLETTALANRLGDGAPASIEDVEKLVRLSVAAMEHFNAFTRELAATLRELTDAERDQH
Ga0247825_101918972	3300028812	Soil	MASQNPAADLPSNASSLTTLAEQLRDGPLERLVERQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPH
Ga0247825_104698142	3300028812	Soil	MASQNPLLYASSTPSLGALAEQLRDGPLQRLVELQMQTTALADRLAEGAPAKIEDVEQLVRLSIAAMQHFNAFTRELSGVLRQLTDAAQQPH
Ga0247825_114077961	3300028812	Soil	MASQNPAADLPSHASSLTTLAEQLRDGPLQRLVELQIETTALADRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAV
Ga0307497_100112453	3300031226	Soil	MANQDSAVEALSAPSSLTALAEQLRDGPLQRLVELQIETTALANRLGDGAPARIEDVEHLVRLSVSAMEHFNAFTRGLATVLRDLTDAKRQPH
Ga0307497_106144002	3300031226	Soil	MASHDSGLDGSTTPSSLGALAEQLRDGPLQRLVELQMQTTSLADRLAAGAPAKVEDVEQLVRLSIATMQHFNAFTRGLAGVLRELTEAERPSH
Ga0310888_101332812	3300031538	Soil	MRHPNIVSNPGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAAALRELTDAEQRHEH
Ga0310887_101839952	3300031547	Soil	MASQNPAADVPSTASALTTLAEQLRDGPLQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH
Ga0307408_1003250683	3300031548	Rhizosphere	MASQNSAADIPSEASSLTTLAEQLRDGPLQRLVELQTETTALANRLGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAGILRELTDGERHPH
Ga0307473_100745833	3300031820	Hardwood Forest Soil	NPEMASRTSAVDARSAPSSIATLAEQLRDGPLQRLVELQMQTTALAGRLANGAPAKIEDVEQLVRLSLSAMQHFNAFTVEFGAVLRDLTDDRRQPH
Ga0310907_105460082	3300031847	Soil	MRHPNIVSNPGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKL
Ga0310904_105734712	3300031854	Soil	MRHPNIVSNPGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAATLRELTDAEQRHEH
Ga0310904_113224032	3300031854	Soil	SQNPAADLPSHASSLTTLAEQLRDGALQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPH
Ga0310892_105605892	3300031858	Soil	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQIETAALADRLDDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAAVLRELTDAQRHPH
Ga0310900_104223542	3300031908	Soil	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQIETTALADRLDDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAAVLRELTDAQRHSH
Ga0310901_104465942	3300031940	Soil	MRHPNIVSNSGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAAALRELTDAEQRHEH
Ga0310885_107601392	3300031943	Soil	MASQNPAADLPSHASSLTTLAEQLRDGPLQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELASVLRELTDAERHPH
Ga0310884_100892632	3300031944	Soil	MGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAAALRELTDAEQRHEH
Ga0310903_103468142	3300032000	Soil	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQIETTALADRLDDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELAAVLRELTDGERHRH
Ga0310897_102367642	3300032003	Soil	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQIETAALADRLDDGAPAKIEDVQQLVRLSLSAMEHFNVFTRELGAVLRELTDAERHPH
Ga0310906_101869153	3300032013	Soil	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQIETTALADRVGDGAPAKIEDVQQLVRLSLSAMEHFNVFTREFAAVLRELTDAERHPH
Ga0310899_106571321	3300032017	Soil	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAAALRELTDAEQRHEH
Ga0315910_100981162	3300032144	Soil	MATQNFAPLTEAAPSALAALADQLRDGPLQRLVELQQQTTALADRLTDGPPGKIEDLEQLVRLSVAAMEHFNVFTREFAAVLRALTDAQRNPH
Ga0315912_100413574	3300032157	Soil	MASQNPILEFPSTPSSLDTLAEQLRDGPLQRLVELQLETTALANRLGHGAPASIEDVERLVRLSVAAMEHFNAFTRELAATLRELTDAERDQH
Ga0315912_101616173	3300032157	Soil	MASRPPVVDAATAPSSIAALAEQLRDGPLQRLVELQRQTTALANRLADGAPAKIEDVEQLVRLSLSAMQHFNAFTVEFAAVLRDLTDDRRQPH
Ga0315912_103869882	3300032157	Soil	MASQNPAADLPSDASSLTTLAEQLRDGPLQRLVELQIETTALAERLDDGATAKIEDVQQLVRLSLSAMEHFNVFTRELAAVLRELT
Ga0310889_103047341	3300032179	Soil	PGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAAALRELTDAEQRHEH
Ga0307471_1006198391	3300032180	Hardwood Forest Soil	VPNPEMASRTSAVDARSAPSSIAALAEQLRDGPLQRLVELQMQTTALAGRLANGAPAKIEDVEQLVRLSLSAMQHFNAFTVEFGAVLRDLTDDRRQPH
Ga0307472_1003434373	3300032205	Hardwood Forest Soil	MASRTSAVDARSAPSSIATLAEQLRDGPLQRLVELQMQTTALAGRLANGAPAKIEDVEQLVRLSLSAMQHFNAFTVEFGAVLRDLTDDRRQPH
Ga0310896_105122382	3300032211	Soil	KLRCAAANMRHPNIVSNPGMGSQNPALKSPSAPSSIDTLAEQLRDGPLQRLVELQTETTALADRLSDGAPARIEDVEKLVKLSVSAMEHFNAFTRELAAALRELTDAEQRHEH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090039

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences