Metagenome Family F090025

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090025
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	99 residues
Representative Sequence	MPPEPTYYVQISDPEEPERWHTVARVEGRELADEVIRLAQGSYMRTTVMAESHYRARAVSRSQLRRDKRLAHADWELGMGEHRHYGRALVERARTNLLHR
Number of Associated Samples	71
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	63.89 %
% of genes near scaffold ends (potentially truncated)	28.70 %
% of genes from short scaffolds (< 2000 bps)	86.11 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.630 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (31.482 % of family members)
Environment Ontology (ENVO)	Unclassified (24.074 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (30.556 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.16% β-sheet: 20.31% Coil/Unstructured: 44.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.93.1.0: automated matches	d5x2mb_	5x2m	0.53355
f.54.1.2: Amino acid antiporter-like	d3giaa_	3gia	0.52564
c.56.2.1: Purine and uridine phosphorylases	d2b94a1	2b94	0.52504
a.211.1.1: HD domain	d2cqza_	2cqz	0.52324
c.94.1.1: Phosphate binding protein-like	d2onsa2	2ons	0.52281

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF03450	CO_deh_flav_C	45.37
PF02738	MoCoBD_1	4.63
PF04203	Sortase	3.70
PF12850	Metallophos_2	1.85
PF13478	XdhC_C	0.93
PF00932	LTD	0.93
PF00881	Nitroreductase	0.93
PF00149	Metallophos	0.93
PF12681	Glyoxalase_2	0.93
PF06240	COXG	0.93
PF00941	FAD_binding_5	0.93
PF00999	Na_H_Exchanger	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	3.70
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.93
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.93
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.93
COG3427	Carbon monoxide dehydrogenase subunit CoxG	Energy production and conversion [C]	0.93
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
All Organisms	root	All Organisms	45.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
cellular organisms	root	All Organisms → cellular organisms	45.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.63 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	8.33 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28.70 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	8.33 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	8.33 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.56 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.85 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	8.33 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.78 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.85 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.93 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	8.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.78 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.85 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	8.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.78 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1.85 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	8.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.78 %
Geodermatophilus bullaregiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus bullaregiensis	1.85 %
Rubrobacter xylanophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003373\|JGI25407J50210_10039987	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1202	Open in IMG/M
3300003373\|JGI25407J50210_10101716	Not Available	710	Open in IMG/M
3300003373\|JGI25407J50210_10107025	Not Available	690	Open in IMG/M
3300004463\|Ga0063356_100376009	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300005168\|Ga0066809_10219536	Not Available	520	Open in IMG/M
3300005169\|Ga0066810_10169806	Not Available	532	Open in IMG/M
3300005713\|Ga0066905_101783252	Not Available	567	Open in IMG/M
3300005937\|Ga0081455_10219272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1411	Open in IMG/M
3300005937\|Ga0081455_10714404	Not Available	637	Open in IMG/M
3300005981\|Ga0081538_10001810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21554	Open in IMG/M
3300005981\|Ga0081538_10008680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8591	Open in IMG/M
3300005981\|Ga0081538_10143134	Not Available	1098	Open in IMG/M
3300005981\|Ga0081538_10266959	Not Available	643	Open in IMG/M
3300006049\|Ga0075417_10287962	Not Available	795	Open in IMG/M
3300006847\|Ga0075431_100157706	All Organisms → cellular organisms → Bacteria	2334	Open in IMG/M
3300006847\|Ga0075431_100551764	Not Available	1140	Open in IMG/M
3300006969\|Ga0075419_11386063	Not Available	524	Open in IMG/M
3300007004\|Ga0079218_10797108	Not Available	907	Open in IMG/M
3300007004\|Ga0079218_11166061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus bullaregiensis	794	Open in IMG/M
3300009081\|Ga0105098_10059699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1573	Open in IMG/M
3300009157\|Ga0105092_10660176	Not Available	606	Open in IMG/M
3300009793\|Ga0105077_106117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	859	Open in IMG/M
3300009799\|Ga0105075_1048164	Not Available	543	Open in IMG/M
3300009802\|Ga0105073_1064240	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	517	Open in IMG/M
3300009811\|Ga0105084_1023740	Not Available	1024	Open in IMG/M
3300009812\|Ga0105067_1024109	Not Available	859	Open in IMG/M
3300009814\|Ga0105082_1007104	Not Available	1520	Open in IMG/M
3300009814\|Ga0105082_1041890	Not Available	756	Open in IMG/M
3300009815\|Ga0105070_1100456	Not Available	570	Open in IMG/M
3300009817\|Ga0105062_1017006	Not Available	1197	Open in IMG/M
3300009818\|Ga0105072_1088787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	612	Open in IMG/M
3300009818\|Ga0105072_1124958	Not Available	529	Open in IMG/M
3300009819\|Ga0105087_1014162	Not Available	1094	Open in IMG/M
3300009819\|Ga0105087_1023503	Not Available	901	Open in IMG/M
3300009822\|Ga0105066_1067360	Not Available	765	Open in IMG/M
3300009837\|Ga0105058_1008910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1943	Open in IMG/M
3300009840\|Ga0126313_10000041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	53259	Open in IMG/M
3300010039\|Ga0126309_10148598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1257	Open in IMG/M
3300010040\|Ga0126308_10253916	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300010045\|Ga0126311_10967805	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300011398\|Ga0137348_1087846	Not Available	537	Open in IMG/M
3300011412\|Ga0137424_1017989	Not Available	1047	Open in IMG/M
3300011412\|Ga0137424_1058640	Not Available	723	Open in IMG/M
3300012159\|Ga0137344_1110712	Not Available	509	Open in IMG/M
3300014271\|Ga0075326_1289341	Not Available	511	Open in IMG/M
3300014310\|Ga0075331_1091824	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	704	Open in IMG/M
3300014320\|Ga0075342_1060946	Not Available	934	Open in IMG/M
3300018053\|Ga0184626_10391789	Not Available	557	Open in IMG/M
3300018422\|Ga0190265_10064550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3274	Open in IMG/M
3300018422\|Ga0190265_10085633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2901	Open in IMG/M
3300018422\|Ga0190265_10121015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2501	Open in IMG/M
3300018422\|Ga0190265_11009453	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	954	Open in IMG/M
3300018432\|Ga0190275_10041227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3794	Open in IMG/M
3300018432\|Ga0190275_13579364	Not Available	503	Open in IMG/M
3300018466\|Ga0190268_10813878	Not Available	710	Open in IMG/M
3300018469\|Ga0190270_10098697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2230	Open in IMG/M
3300018469\|Ga0190270_10174251	Not Available	1782	Open in IMG/M
3300018469\|Ga0190270_10484481	Not Available	1173	Open in IMG/M
3300018469\|Ga0190270_12045680	Not Available	631	Open in IMG/M
3300018481\|Ga0190271_10094284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2733	Open in IMG/M
3300018481\|Ga0190271_11252437	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	863	Open in IMG/M
3300018481\|Ga0190271_12634194	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	603	Open in IMG/M
3300018481\|Ga0190271_12661899	Not Available	600	Open in IMG/M
3300019377\|Ga0190264_10981816	Not Available	672	Open in IMG/M
3300019377\|Ga0190264_12312230	Not Available	505	Open in IMG/M
3300019884\|Ga0193741_1054294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1033	Open in IMG/M
3300026535\|Ga0256867_10018059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3035	Open in IMG/M
3300026535\|Ga0256867_10060587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1510	Open in IMG/M
3300026535\|Ga0256867_10203141	Not Available	725	Open in IMG/M
3300027068\|Ga0209898_1040100	Not Available	604	Open in IMG/M
3300027277\|Ga0209846_1046807	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	668	Open in IMG/M
3300027324\|Ga0209845_1002521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3189	Open in IMG/M
3300027379\|Ga0209842_1011176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1773	Open in IMG/M
3300027384\|Ga0209854_1021715	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1043	Open in IMG/M
3300027490\|Ga0209899_1008709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2327	Open in IMG/M
3300027490\|Ga0209899_1051394	Not Available	853	Open in IMG/M
3300027561\|Ga0209887_1026464	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1357	Open in IMG/M
3300027561\|Ga0209887_1031889	Not Available	1202	Open in IMG/M
3300027577\|Ga0209874_1005160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3948	Open in IMG/M
3300027636\|Ga0214469_1098720	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300027647\|Ga0214468_1019736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1842	Open in IMG/M
3300027650\|Ga0256866_1011628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2191	Open in IMG/M
3300027650\|Ga0256866_1016967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1835	Open in IMG/M
3300027650\|Ga0256866_1049606	Not Available	1111	Open in IMG/M
3300027722\|Ga0209819_10253786	Not Available	609	Open in IMG/M
3300027873\|Ga0209814_10226526	Not Available	809	Open in IMG/M
3300027886\|Ga0209486_10132592	Not Available	1355	Open in IMG/M
3300028592\|Ga0247822_10515526	Not Available	948	Open in IMG/M
3300028596\|Ga0247821_10538286	Not Available	747	Open in IMG/M
3300030006\|Ga0299907_10197318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1661	Open in IMG/M
3300030006\|Ga0299907_10269719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1394	Open in IMG/M
3300030006\|Ga0299907_10294144	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1326	Open in IMG/M
3300030006\|Ga0299907_10597332	Not Available	859	Open in IMG/M
3300030006\|Ga0299907_10708580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	769	Open in IMG/M
3300030006\|Ga0299907_10897612	Not Available	659	Open in IMG/M
3300030006\|Ga0299907_11038960	Not Available	599	Open in IMG/M
3300030006\|Ga0299907_11054845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	593	Open in IMG/M
3300030336\|Ga0247826_10974380	Not Available	672	Open in IMG/M
3300030619\|Ga0268386_10293811	Not Available	1178	Open in IMG/M
3300030620\|Ga0302046_11335743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus bullaregiensis	559	Open in IMG/M
3300031228\|Ga0299914_10485639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1068	Open in IMG/M
3300031228\|Ga0299914_11105365	Not Available	640	Open in IMG/M
3300031229\|Ga0299913_11117785	Not Available	750	Open in IMG/M
3300031740\|Ga0307468_100298655	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1168	Open in IMG/M
3300032013\|Ga0310906_10472397	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300032075\|Ga0310890_11458754	Not Available	563	Open in IMG/M
3300033550\|Ga0247829_11301400	Not Available	601	Open in IMG/M
3300033551\|Ga0247830_11362026	Not Available	567	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.11%
Host-Associated	Host-Associated	13.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.70%
Plants	Host-Associated → Plants	13.89%
Aquatic	Environmental → Aquatic	7.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.70%
Roots	Host-Associated → Plants → Roots	6.48%
Sediment	Environmental → Aquatic → Sediment	4.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.85%
Sand	Environmental → Terrestrial → Soil → Sand	23.15%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	6.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Loam	Environmental → Terrestrial → Soil → Loam	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.04%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	23.15%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.48%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	6.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.63%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	31.48%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	23.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.48%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	4.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.63%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.70%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.78%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009793	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40	Environmental	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300009802	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009812	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300011398	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027636	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25407J50210_100399872	3300003373	Tabebuia Heterophylla Rhizosphere	VVEPTYFVQISDPEEEPERWHTVARVEGRELADEVVRLAQGSYMRTTVMAESHYLARAVSQSALKRDKLLAHAQWELGMGPHRHYGRALVEKAYQNLGVR*
JGI25407J50210_101017162	3300003373	Tabebuia Heterophylla Rhizosphere	RFATMSTITPVVEPTYYVQISDPGEEPERWHTVARVEGRELADEVIRLAQGSYMRTTVLAESHYHARAVSRTKLRRDKRLAHADWELGMGEHRHYGRALVERARSNLLRGSPQG*
JGI25407J50210_101070252	3300003373	Tabebuia Heterophylla Rhizosphere	PTPVPASRFQGRWRLVAGVRSGHVADPTYFVQISDPEEPERWHTVASVEGKELADEVVRLAQGSYMRTTVMAESHYLARAVSQSALKRDRQLAHAQWELGMGPHRHYGRALVEKARQNIVAR*
Ga0063356_1003760093	3300004463	Arabidopsis Thaliana Rhizosphere	VSEPTYFVQIADPEDPDRWHTVARVEGKALADEVVRLAEGSYMRTTVMAEGHYQARALSRSRLRQDKRLAHAEWELGMGEYRHYGRALVERARTNVSRG*
Ga0066809_102195362	3300005168	Soil	VPPEPTYYVQIAKPDEPNRWHTIARVEGRELADEVVRLASGSYMRTTVITESHFLARAVSRSQFRREGKLTHAEWELGMGELRQYGRSLVERARSNLAGR*
Ga0066810_101698062	3300005169	Soil	VPPEPTYYVQIAKPDEPNRWHTIARVEGRELADEVVRLASGSYMRTTVITESHFLARAVSRSKFRREGKLTHAEWELGMGEHRQYGRALLERARSNLAGR*
Ga0066905_1017832522	3300005713	Tropical Forest Soil	MPPEPTYYVQIADPEEPERWHTVARVEGKELADEVVRLARGSYMRTTVLAESHYLARALSQSKLKQEKRLAHAQWELGMGEHREYGRALVERARSNLGKE*
Ga0081455_102192723	3300005937	Tabebuia Heterophylla Rhizosphere	MPPEPTYYVQISDPQEPERWHTVARVEGRELADEVVRLAEGSYMRATVLAESHYRARAVSRSALRRDKSLAHADWELGMGEYRHYGRALVERARVTLGRSLT*
Ga0081455_107144042	3300005937	Tabebuia Heterophylla Rhizosphere	MPPVPTYFIQIADPLEPERWHTVARVEGRELADEVVRLAQGSYMRTTVMSESHYFARAVSQTALRRDKRLAHAQWELGMGEHRHYGRALVERARQILAAR*
Ga0081538_1000181016	3300005981	Tabebuia Heterophylla Rhizosphere	VADPTYFVQISDPEEPERWHTVASVEGKELADEVVRLAQGSYMRTTVMAESHYLARAVSQSALKRDRQLAHAQWELGMGPHRHYGRALVEKARQNIVAR*
Ga0081538_100086808	3300005981	Tabebuia Heterophylla Rhizosphere	MSTITPVVEPTYYVQISDPGEEPERWHTVARVEGRELADEVIRLAQGSYMRTTVLAESHYHARAVSRTKLRRDKRLAHADWELGMGEHRHYGRALVERARSNLLRGSPQG*
Ga0081538_101431342	3300005981	Tabebuia Heterophylla Rhizosphere	VVEPTYYVQISDPEEEPERWHTVARVEGRELADEVIRLAQGSYMRATVLAESHYHARAVSRTKLRRDKRLAHADWELGMGEHRHYGRALVERARSNLLRA*
Ga0081538_102669592	3300005981	Tabebuia Heterophylla Rhizosphere	MPPEPTYFVQIADPEDPDRWHTVARVEGKAMADEVVRLAQGSYMRTTVMAESHYLARALSRSRLRQDKRLAHAEWELGMGVHRHYGRALVERARTNLSRG*
Ga0075417_102879622	3300006049	Populus Rhizosphere	YFVQIADPEDPDRWHTVARVEGKALADEVVRLAEGSYMRTTVMAEGHYQARALSRSRLRQDKRLAHAEWELGMGEYRHYGRALVERARTNVSRG*
Ga0075431_1001577062	3300006847	Populus Rhizosphere	VSEPTYFVQIADPEDPDRWHTVARVEGKALADEVVRLAQGSYMRTTVMAEGHYQARALSRSRLRQDKRLAHAEWELGMGEYRHYGRALVERARTNVSRG*
Ga0075431_1005517642	3300006847	Populus Rhizosphere	MPPEPTYFVQIADPEDPERWHTVARVEGKALADEVVRLAQGSYMRTTVMAESHYLARALSRSRLRQDKRLAHAEWELGMGERRHYGRALVERARTNLSRG*
Ga0075419_113860631	3300006969	Populus Rhizosphere	MPPEPTYFVQIADPEDPERWHTVARVEGKALADEVVRLAQGSYMRTTVMAESHYLARALSRSRLRQDKRLAHAEWELGMGERRHYGRALVERARTNLSRGVA*
Ga0079218_107971082	3300007004	Agricultural Soil	MPPEPTYFVQIADPEDPDRWHTVARVEGKVLAYEVVRLAQGSYMRTTVMAEGHYEARALSRSRLRHDKRLAHAEWELGMGDHRHYGRALVERARTNLSRG*
Ga0079218_111660612	3300007004	Agricultural Soil	MPPEPTYFVQVADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGQALVERAERNLAAR*
Ga0105098_100596992	3300009081	Freshwater Sediment	MPPEPTYYVQISDPDEEPERWHTVARVEGRELADEVIRLAQGSYMRATVLAESHYRARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERALQNLRVR*
Ga0105092_106601761	3300009157	Freshwater Sediment	PDEEPERWHTVARVEGRELADEVIRLAQGSYMRATVLAESHYRARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERALQNLRVR*
Ga0105077_1061172	3300009793	Groundwater Sand	MTEPTYYVQFAEPEEPDRWHTIARVQGRPLADEVARLAKGSYMRATVVTHYAARLRSRSALRREGKLAHAEWELGMGEHRHYGRALVERAERNLRVPSP*
Ga0105075_10481642	3300009799	Groundwater Sand	MPPEPTYYVQISDPEEPERWHTLARVEGRELADEVIRLAQGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRDYGRALVERARSNLLHR*
Ga0105073_10642401	3300009802	Groundwater Sand	EPTYYVQFAEPEEPDRWHTIARVQGRPLADEVARLAKGSYMRATVVTHYAARLRSRSALRREGKLAHAEWELGMGEHRHYGRALVERAERNLRVPSP*
Ga0105084_10237403	3300009811	Groundwater Sand	MAPEPTYYVQISDSEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARANLGAR*
Ga0105067_10241092	3300009812	Groundwater Sand	VQGVTICSVSTEPTYYVQFAEPEEPERWHTIARVQGRPLADEVVRLAAGSYMRTTVVTHYLARAVSRSALRRDGRLAHAEWELGMGPHRDYGRALVEKAERNLRLQAT*
Ga0105082_10071041	3300009814	Groundwater Sand	MQGAMPPEPTYFVQIAQPEEPERWHTVARVEGHELADEVVRLAQGSYMRTTVISHYLARAVSRSQLRREKRLAHAEWELGMGEHRHYGRALVEKAQTNLTHRHPSLDV*
Ga0105082_10418902	3300009814	Groundwater Sand	MPPEPTYFVQIADPEEPERWHTVARVEGKELADEVVRLAQGSYMRTTVMAESHYLARAVSRSKLRRDGLLAHADWELGMGEHRNYGRALVERAQTNISSR*
Ga0105070_11004562	3300009815	Groundwater Sand	VVEPTYFVQIADPEEPERWHTVARVEGRELADEVVRLAHCSYMRATVMAESHYLARAVSRSQLRRDGLLAHAEWELGMGEHRHYGRALVDRAQANISRR*
Ga0105062_10170062	3300009817	Groundwater Sand	MPPEPTYYVQISDPEEPERWHTVARVEGRELADEVIRLAQGSYMRTTVMAESHYRARAVSRSQLRRDKRLAHADWELGMGEHRHYGRALVERARTNLLHR*
Ga0105072_10887871	3300009818	Groundwater Sand	MNEPTYYVQFAEPEEPDRWHTIARVQGRPLADEVARLAKGSYMRATVVTHYAARLRSRSALRREGKLAHAEWELGMGEHRHYGRALVERAERNLRVPSP*
Ga0105072_11249582	3300009818	Groundwater Sand	EPERWHTVARVEGRELADEVIRLAQGSYMRTTVMAESHYRARAVSRSQLRRDKRLAHADWELGMGEHRHYGRALVERARTNLLHR*
Ga0105087_10141622	3300009819	Groundwater Sand	MQGAMPPEPTYFVQIAEPEEPERWHTVARVEGHELADEVVRLAQGSYMRTTVISHYLARAVSRSQLRREKRLAHAEWELGMGEHRHYGRALVEKAQTNLTHRHPSLDV*
Ga0105087_10235031	3300009819	Groundwater Sand	KHLMALEPTYYVQISEPEEPERWHTVARVEGRELADEVIRLAEGSYMRTTVMAESHYLARAVSRSKLRRDGLLAHADWELGMGEHRNYGRALVERAQTNISSR*
Ga0105066_10673602	3300009822	Groundwater Sand	MPPEPTYYVQISDPEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARANLGAH*
Ga0105058_10089101	3300009837	Groundwater Sand	MAPEPTYYVQISDSEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARSNLPRG*
Ga0126313_1000004111	3300009840	Serpentine Soil	MRDATYYVQFESPEEPGPWHAIACVHDHALAEEVARLAEGSYGRAEVLTHYRARIASRSALRREGTLAHADWELTMGQHRGYGEALLHRAERNLGAVAGS*
Ga0126309_101485982	3300010039	Serpentine Soil	VAGDPTYYIQFADPEQPDRWHTIARVQGRPLADEVVRLAEGSYMRTTVVTHFRARALSRSHLRRDGKLAHAEWELGMGPHREYGRALVAKAERNLRPVVEQGS*
Ga0126308_102539161	3300010040	Serpentine Soil	MRDATYYVQFESPEEPGRWHAIACVHDHALAEEVARLAEGSYGRAEVLTHYRARIASRSALRREGTLAHADWELTMGQHRGYGEALLHRAERNLGAVAGS*
Ga0126311_109678051	3300010045	Serpentine Soil	MRDATYYVQFESPEEPGPWHAIACVHDHALAEEVARLAEGSYGRAEVLTHYRARIASRSALRREGTLAHADWELTMGQHRGYGEALLHRAER
Ga0137348_10878461	3300011398	Soil	MPPEPTYYVQIADSEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARAN
Ga0137424_10179892	3300011412	Soil	MAPEPTYYIQISDPEEPERWHTVARVEGRALADEVIRLAQGTYMRATVTAESHFSARALSRSHLRRDKRLAHADWELGMGEHRHYGRALVERAQQNLLGR*
Ga0137424_10586401	3300011412	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGKALAEEVVRLAEGSYMRTTVMAESHYLARSVSRSQLRRDKRLAHAEWELGMGEYRHYGRALVERARTNLSRG*
Ga0137344_11107121	3300012159	Soil	MAPEPTYYVQISDSEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARANLGAL*
Ga0075326_12893411	3300014271	Natural And Restored Wetlands	MAPEPTYYVQISDPEEEPERWHTVARVEGKALADEVIRLAQGTYMRATVTAESHFRARALSRSRLRRDKRLAHADWELGMGEHRHYGRALVERA
Ga0075331_10918241	3300014310	Natural And Restored Wetlands	EPTYYVQIAAPDEPERWHTIARVEGRPLAGEVVRLAEGSYMRATVIEHYRARALSRSRLRRDGKLAHAEWEIGMGEHRQYGRALVERAERNLASL*
Ga0075342_10609461	3300014320	Natural And Restored Wetlands	MAPEPTYYIQIADPEEEPDRWHTVARVEGKELADAVIRLAQGSYMRATVTAESHYRARALSRSRLRRDKRLAHADWELGMGAHRHYGRALVERARETLAGG*
Ga0184626_103917891	3300018053	Groundwater Sediment	MAPEPTYYVQISDSEEPERWHTVARVEGRVLADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERAMANLGSR
Ga0190265_100645503	3300018422	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGKALAAEVVRLAKGSYMRTTVMAESHFLARALSRSRLRQDKRLAHAEWELGMGEHRHYGRALVERARTNLARG
Ga0190265_100856333	3300018422	Soil	MPPEPTYFVQIAAPEEPERWHTIARVQGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGRALVERAERNLAG
Ga0190265_101210151	3300018422	Soil	MPPEPTYFVQIADPEDPDRWHTVARVEGKALADEVVRLAQGSYMRTTVMAEGHYEARALSRSRLRQDKRLAHAEWELAMGEHRHYGRALVERARTNVTRG
Ga0190265_110094531	3300018422	Soil	LAGKKYVGAVPPEPTYFDQIADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGDHRHYGRALVERAERNLASS
Ga0190275_100412272	3300018432	Soil	MPPEPTYFVQIADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGRALVERAERNLTSR
Ga0190275_135793641	3300018432	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGKALAAEVVRLAQGSYMRTTVMAESHYLARSLSRSRLRQDKRLAHAEWELGMGEYRHYGRALVERARTNLSRG
Ga0190268_108138782	3300018466	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGKALADEVVRLAQGSYMRTTVMAESHYLARALSRSRLRQDKRLAHAEWELGMGERRHYGRALVERARTNLSRG
Ga0190270_100986972	3300018469	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGKTLANEVVRLAEGSYMRTTVMAESHYLARSLSRSRLRKDKRLSHAEWELGMGEYRHYGRALVERARTNLSRG
Ga0190270_101742513	3300018469	Soil	MPPEPTYYVQISDPEEPERWHTVARVEGRALADEVIRLAQGGYMRATVTAESHYSARALSRSHLRRDKRLAHADWELGMGEYRHYGRALVERAQQHLLGR
Ga0190270_104844812	3300018469	Soil	MAPEPTYYVQISDPDEPERWHTVARVEGRSLADEVIRLAQGTYMRATVTAESHYSARALSRSHLRRDKRLAHADWELGMGEHRHYGRALVERAQQNLLGQ
Ga0190270_120456802	3300018469	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGKTLANEVVRLAEGSYMRTTVMAESHYLARSLSRSRLRQDKRLAHAEWELGMGEYRHYGRALVERARTNLSRG
Ga0190271_100942841	3300018481	Soil	MPPEPTYYVQISDPEEPERWHTVARVEGRALADEVMRLAQGSYMRATVTAETHFRARALSRSHLRKDKRLAHADWELGMGEHRHYGRALVERAQQNLLGR
Ga0190271_112524371	3300018481	Soil	YVQISDPEEPERWHTVARVEGRALADEVIRLAQGTYMRATVTAESHFNARALSRSHLRKEKRLAHADWELGMGDHRHYGRALVDRARANLGVR
Ga0190271_126341942	3300018481	Soil	DPERWHTVARVEGKTLANEVVRLAEGSYMRTTVMAESHYLARSISRSRLRKDKRLSHAEWELGMGEYRHYGRALVERARTNLSRG
Ga0190271_126618991	3300018481	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGKVLAAEVVRLAQGSYMRTTVMAESHYLARSLSRSRLRQDKRLAHAEWELGMGEYRHYGRALVERARTNLSRPA
Ga0190264_109818161	3300019377	Soil	MPPEPTYFIQIADPEEPDRWHTLARVEGRELADEVVRLAAGSYMRTTVMAESHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGQALVERAERNLASR
Ga0190264_123122301	3300019377	Soil	SGEPDHWHTVARVEGRELADEVVRLAAGSYMRTTVMAESHYAARAVSQSRLRRDGVLAHAQWELGMGERRHYGQALVERAERNLATR
Ga0193741_10542942	3300019884	Soil	MPPEPTYFVQIADPDDPERWHTVARVEGKALADEVVRLAQGSYMRTTVMAESHYLARALSRSRLRQDKRLAHAEWELGMGERRHYGRALVERARTNLSRG
Ga0256867_100180591	3300026535	Soil	MAPEPTYYVQISDPEEEPERWHTVARVEGRELADEVVRLAQGTYMRATVTAETRYRARALSRSHLRKEKRLAHADWELGMGEQRHYGRALVERAREHLGR
Ga0256867_100605872	3300026535	Soil	MPPEPTYYVQISDPEEPERWHTLARVEGRELADEVIRLAQGSYMRTTVLAESHYRARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARSNLLHR
Ga0256867_102031411	3300026535	Soil	MPPEPTYFVQIADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIAHYAARAVSQSRLRRDGALAHAQWELGMGEHRHYGRALVERAERNLASR
Ga0209898_10401001	3300027068	Groundwater Sand	VSTEPTYYVQFAEPEEPERWHTIARVQGRPLADEVVRLAAGSYMRTTVVTHYLARAVSRSALRRDGRLAHAEWELGMGPHRDYGRALVEKAERNLRLQAT
Ga0209846_10468071	3300027277	Groundwater Sand	EEPDRWHTIARVQGRPLADEVARLAKGSYMRATVVTHYAARLRSRSALRREGKLAHAEWELGMGEHRHYGRALVERAERNLRVPSP
Ga0209845_10025213	3300027324	Groundwater Sand	MQGAMPPEPTYFVQIAEPEEPERWHTVARVEGHELADEVVRLAQGSYMRTTVISHYLARAVSRSQLRREKRLAHAEWELGMGEHRHYGRALVEKAQTNLTHRHPSLDV
Ga0209842_10111762	3300027379	Groundwater Sand	MPPEPTYYVQISDPEEPERWHTVARVEGRELADEVIRLAQGSYMRTTVMAESHYRARAVSRSQLRRDKRLAHADWELGMGEHRHYGRALVERARANLGAH
Ga0209854_10217152	3300027384	Groundwater Sand	MTEPTYYVQFAEPEEPDRWHTIARVQGRPLADEVARLAKGSYMRATVVTHYAARLRSRSALRREGKLAHAEWELGMGEHRHYGRALVERAERNLRVPSP
Ga0209899_10087092	3300027490	Groundwater Sand	MPPEPTYYVQISDPEEPERWHTVARVEGRELADEVIRLAQGSYMRTTVMAESHYRARAVSRSQLRRDKRLAHADWELGMGEHRHYGRALVERARTNLLHR
Ga0209899_10513942	3300027490	Groundwater Sand	MAPEPTYYVQISDSEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARANLGAH
Ga0209887_10264641	3300027561	Groundwater Sand	SDSEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARANLGAR
Ga0209887_10318892	3300027561	Groundwater Sand	YYVQIADSEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARTNLLHR
Ga0209874_10051603	3300027577	Groundwater Sand	MAPEPTYYVQISDSEEPERWHTVARVEGRALADEVVRLARGSYMRTTVMAESHYGARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARTNLLHR
Ga0214469_10987202	3300027636	Soil	MPPEPVYFVQIALPEEPERWHTVARVEGRELADEVVRLAAGSYMRTTVMAESHYAARALSQSRLRRDGVLAHAQWELGMGEHRHYGQALVERAEQNLARR
Ga0214468_10197361	3300027647	Soil	VPPEPTYFIQIADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGENRHYGRALVERAEKNLSAR
Ga0256866_10116283	3300027650	Soil	VVTTEPTYYVQFLDPDEELERWHTIARVQGRELADEVLRLAEGSYMRTTVISHYRGRAVSRSALRRDGRLAHAEWELGMGPHRHYGRALVEKAERNLRPASI
Ga0256866_10169672	3300027650	Soil	MPPEPVYFVQIALPEEPERWHTVARVEGRDLADEVVRLAAGSYMRTTVMAESHYAARALSQSRLRRDGVLAHAQWELGMGEHRHYGQALVERAEQNLARR
Ga0256866_10496062	3300027650	Soil	VPPEPTYFVQIADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGENRHYGRALVERAEKNLSAR
Ga0209819_102537862	3300027722	Freshwater Sediment	PDEEPERWHTVARVEGRELADEVIRLAQGSYMRATVLAESHYRARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERALQNLRVR
Ga0209814_102265261	3300027873	Populus Rhizosphere	SEPTYFVQIADPEDPDRWHTVARVEGKALADEVVRLAEGSYMRTTVMAEGHYQARALSRSRLRQDKRLAHAEWELGMGEYRHYGRALVERARTNVSRG
Ga0209486_101325922	3300027886	Agricultural Soil	MPPEPTYFVQVADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGQALVERAERNLAAR
Ga0247822_105155262	3300028592	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGRPMADEVVRLAQGSYMRTTVMAESHFLARAVSQSALKRDKRLAHAQWELGMGEYRHYGQALVEKARSNLSHSLP
Ga0247821_105382862	3300028596	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGRPMADEVVRLAQGSYMRTTVMAESHFLARAVSQSALKRDKRLAHAQWELGMGEHRHYGQALVEKARLNLSHSVP
Ga0299907_101973182	3300030006	Soil	MPPVPTYFVQIADSEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVMAESHYTARAVSQSRLRRDGDLAHAQWELGMGEYRHYGHALVERAERNLASR
Ga0299907_102697192	3300030006	Soil	MPPEPTYFVQIADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGENRHYGRALVERAEKNLSAR
Ga0299907_102941442	3300030006	Soil	VSEPTYFIQIADPEESERWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGRALVERAERNLTSR
Ga0299907_105973322	3300030006	Soil	MPPEPTYFIQIADPEEPDRWHTLARVEGRELADEVVRLAAGSYMRTTVMAESHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGQALVERAQRNLASR
Ga0299907_107085802	3300030006	Soil	MPPEPVYFVQIALPEEPERWHTVARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGRALVERAEQNLARR
Ga0299907_108976121	3300030006	Soil	GRSRRRRARGGENHGAMPPEPTYFVQIADPEEPERWHTVARVEGKALANEVVRLARGSYMRTTVMAESHYLARSLSRSHLRRDKRLAHAEWELGMGEYRHYGRALVERAEANLSRG
Ga0299907_110389601	3300030006	Soil	VPPEPTYFVQIADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRREGVLAHAQWELGMGENRHYGRALVERAEKNL
Ga0299907_110548451	3300030006	Soil	PTYFVQIADPGEPERWHTVARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGQALVERAERNLASR
Ga0247826_109743802	3300030336	Soil	MPPEPTYFVQIADPEDPERWHTVARVEGRPMADEVVRLAQGSYMRTTVMAESHFLARAVSQSALKRDKRLAHAQWELGMGEHRHYGQALVEKARSNLSHSLP
Ga0268386_102938112	3300030619	Soil	MPPEPTYYVQISDPEEPERWHTLARVEGRELADEVIRLAQGSYMRATVLAESHYRARAVSRSALRRDKRLAHADWELGMGEHRHYGRALVERARSNLLHR
Ga0302046_113357431	3300030620	Soil	MPPEPTYFIQIADPEEPDRWHTLARVEGRELADEVVRLAAGSYMRTTVMAESHYAARAVSQSRLRRDGVLAHAQWELGMGEHRHYGQALVERAERNL
Ga0299914_104856392	3300031228	Soil	MPPEAVYFVQIADPEEPERWHTIARVEGRALAYEARAVSQSRLRRDGVLAHAQWELGMGELRHYGRALVERAERNLASR
Ga0299914_111053652	3300031228	Soil	MPPEAVYFVQIADPEEPERWHTIARVEGRALADEVIRLAHGSYMRTTVMAESHYEARAVSQSRLRRDGVLAHAQWELGMGELRHYGRALVERAERNLASR
Ga0299913_111177852	3300031229	Soil	MPPEPTYFIQIADPEEPDRWHTIARVEGRELADEVVRLAAGSYMRTTVIEHYAARAVSQSRLRRDGILAHAQWELGMGEHRHYGRALVERAERNLTSR
Ga0307468_1002986552	3300031740	Hardwood Forest Soil	PDRWHTIARVDGRELADEVVRLASGSYMRTTVITESHFLARAVSRSQFRREGKLTHAEWELGMGEHRQYGRALVERARTNLADK
Ga0310906_104723972	3300032013	Soil	VSEPTYFVQIADPEDPDRWHTVARVEGKALADEVVRLAEGSYMRTTVMAEGHYQARALSRSRLRQDKRLAHAEWELGMGEYRHYGRALVERARTNVSRG
Ga0310890_114587541	3300032075	Soil	AGVRSDGVVEPTYFVQIAEPEEPERWHTVARVEGRPMADEVVRLAQGSYMRTTVMAESHFLARAVSQSALRRDKRLAHAQWELGMGEHRHYGQALVEKARLNLSHSVP
Ga0247829_113014001	3300033550	Soil	MPPEPTYYVQITDPEEPEGWHTVARVEGRELADEVVRLAEGSYMRATVLAESHYRARAISRSALRRDKRLAHADWELGMGEHRHYGRALVERARVNLGRSLT
Ga0247830_113620262	3300033551	Soil	IIPQLTEPTYFVQIADPEDPERWHTVARVEGRPMADEVVRLAQGSYMRTTVMAESHFLARAVSQSALKRDKRLAHAQWELGMGEHRHYGQALVEKARSNLSHSLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090025

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences