Metagenome / Metatranscriptome Family F090012

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090012
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	69 residues
Representative Sequence	MTSSSLHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDVWEVACTARAA
Number of Associated Samples	77
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.07 %
% of genes near scaffold ends (potentially truncated)	27.78 %
% of genes from short scaffolds (< 2000 bps)	84.26 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.037 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (19.444 % of family members)
Environment Ontology (ENVO)	Unclassified (28.704 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.148 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.25% β-sheet: 34.02% Coil/Unstructured: 57.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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SCOP family	SCOP domain	Representative PDB	TM-score
b.38.1.0: automated matches	d4f7uf_	4f7u	0.81627
b.38.1.0: automated matches	d4c92f_	4c92	0.79788
b.38.1.2: Pleiotropic translational regulator Hfq	d2ylba_	2ylb	0.77048
b.38.1.2: Pleiotropic translational regulator Hfq	d1kq1a_	1kq1	0.76828
b.38.1.0: automated matches	d4f7ug_	4f7u	0.76811

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF03109	ABC1	5.56
PF00440	TetR_N	2.78
PF06737	Transglycosylas	2.78
PF00925	GTP_cyclohydro2	2.78
PF13191	AAA_16	1.85
PF04432	FrhB_FdhB_C	1.85
PF00226	DnaJ	0.93
PF00561	Abhydrolase_1	0.93
PF10604	Polyketide_cyc2	0.93
PF13193	AMP-binding_C	0.93
PF00483	NTP_transferase	0.93
PF12697	Abhydrolase_6	0.93
PF08386	Abhydrolase_4	0.93
PF13452	MaoC_dehydrat_N	0.93
PF02803	Thiolase_C	0.93
PF01402	RHH_1	0.93
PF02080	TrkA_C	0.93
PF01243	Putative_PNPOx	0.93
PF07362	CcdA	0.93
PF04055	Radical_SAM	0.93
PF13458	Peripla_BP_6	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	5.56
COG0807	GTP cyclohydrolase II	Coenzyme transport and metabolism [H]	2.78
COG1035	Coenzyme F420-reducing hydrogenase, beta subunit	Energy production and conversion [C]	1.85
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.93
COG5302	Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
All Organisms	root	All Organisms	37.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
cellular organisms	root	All Organisms → cellular organisms	37.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	31.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29.63 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.37 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	3.70 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	3.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2.78 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.85 %
Sporichthyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales	1.85 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
Sporichthyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae	1.85 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.85 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.93 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
Sporichthya	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → Sporichthya	1.85 %
Lentzea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea	0.93 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.93 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.93 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
unclassified Sporichthya	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → Sporichthya → unclassified Sporichthya	1.85 %
Lentzea xinjiangensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea xinjiangensis	0.93 %
Saccharopolyspora karakumensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora karakumensis	0.93 %
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	0.93 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.04 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
Sporichthya sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → Sporichthya → unclassified Sporichthya → Sporichthya sp.	1.85 %
Mycobacterium sp. IWGMT90018-18076	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. IWGMT90018-18076	0.93 %
Lentzea xinjiangensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea xinjiangensis	0.93 %
Saccharopolyspora karakumensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora karakumensis	0.93 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102166214	Not Available	1527	Open in IMG/M
3300003267\|soilL1_10026838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3999	Open in IMG/M
3300003267\|soilL1_10031146	Not Available	1188	Open in IMG/M
3300003267\|soilL1_10085572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1768	Open in IMG/M
3300004463\|Ga0063356_101141822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1126	Open in IMG/M
3300005167\|Ga0066672_10167170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1387	Open in IMG/M
3300005167\|Ga0066672_10230273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1188	Open in IMG/M
3300005171\|Ga0066677_10004362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5609	Open in IMG/M
3300005171\|Ga0066677_10158211	Not Available	1245	Open in IMG/M
3300005177\|Ga0066690_10830678	Not Available	597	Open in IMG/M
3300005186\|Ga0066676_11181169	Not Available	501	Open in IMG/M
3300005336\|Ga0070680_101217741	Not Available	651	Open in IMG/M
3300005345\|Ga0070692_10725030	Not Available	671	Open in IMG/M
3300005435\|Ga0070714_100135259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2207	Open in IMG/M
3300005440\|Ga0070705_100339992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1090	Open in IMG/M
3300005445\|Ga0070708_101773585	Not Available	573	Open in IMG/M
3300005447\|Ga0066689_10173717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1294	Open in IMG/M
3300005458\|Ga0070681_10164860	All Organisms → cellular organisms → Bacteria	2139	Open in IMG/M
3300005467\|Ga0070706_100776983	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300005467\|Ga0070706_101658063	Not Available	583	Open in IMG/M
3300005468\|Ga0070707_100253717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	1712	Open in IMG/M
3300005468\|Ga0070707_101604408	Not Available	618	Open in IMG/M
3300005471\|Ga0070698_102176600	Not Available	508	Open in IMG/M
3300005529\|Ga0070741_10000279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	195165	Open in IMG/M
3300005529\|Ga0070741_10041633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5899	Open in IMG/M
3300005529\|Ga0070741_10071151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3919	Open in IMG/M
3300005529\|Ga0070741_10108360	All Organisms → cellular organisms → Bacteria	2917	Open in IMG/M
3300005529\|Ga0070741_10177092	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300005530\|Ga0070679_101657615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. IWGMT90018-18076	587	Open in IMG/M
3300005532\|Ga0070739_10075650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2008	Open in IMG/M
3300005536\|Ga0070697_101187739	Not Available	680	Open in IMG/M
3300005546\|Ga0070696_101490067	Not Available	579	Open in IMG/M
3300005560\|Ga0066670_10970594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora karakumensis	518	Open in IMG/M
3300005563\|Ga0068855_102326131	Not Available	536	Open in IMG/M
3300005575\|Ga0066702_10162835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1328	Open in IMG/M
3300005587\|Ga0066654_10140078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1218	Open in IMG/M
3300006852\|Ga0075433_11378892	Not Available	610	Open in IMG/M
3300006918\|Ga0079216_11175461	Not Available	614	Open in IMG/M
3300006954\|Ga0079219_10658444	Not Available	784	Open in IMG/M
3300009012\|Ga0066710_100151939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3221	Open in IMG/M
3300009012\|Ga0066710_100913155	Not Available	1352	Open in IMG/M
3300009137\|Ga0066709_100884277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1300	Open in IMG/M
3300009137\|Ga0066709_102311717	Not Available	736	Open in IMG/M
3300009137\|Ga0066709_103766351	Not Available	550	Open in IMG/M
3300009147\|Ga0114129_12709523	Not Available	590	Open in IMG/M
3300011270\|Ga0137391_11470748	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300012180\|Ga0153974_1079757	Not Available	732	Open in IMG/M
3300012202\|Ga0137363_10899822	Not Available	751	Open in IMG/M
3300012204\|Ga0137374_10647826	Not Available	800	Open in IMG/M
3300012204\|Ga0137374_10775091	Not Available	713	Open in IMG/M
3300012204\|Ga0137374_11161846	Not Available	544	Open in IMG/M
3300012212\|Ga0150985_113347424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea xinjiangensis	690	Open in IMG/M
3300012285\|Ga0137370_10351572	Not Available	887	Open in IMG/M
3300012285\|Ga0137370_10354645	Not Available	883	Open in IMG/M
3300012360\|Ga0137375_11290267	Not Available	552	Open in IMG/M
3300012363\|Ga0137390_10333673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1498	Open in IMG/M
3300012532\|Ga0137373_10505310	Not Available	923	Open in IMG/M
3300012532\|Ga0137373_10843920	Not Available	675	Open in IMG/M
3300012683\|Ga0137398_10959702	Not Available	594	Open in IMG/M
3300012924\|Ga0137413_11713715	Not Available	517	Open in IMG/M
3300012927\|Ga0137416_10293517	Not Available	1345	Open in IMG/M
3300012927\|Ga0137416_10952895	Not Available	765	Open in IMG/M
3300012929\|Ga0137404_10079766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2591	Open in IMG/M
3300012929\|Ga0137404_11497466	Not Available	624	Open in IMG/M
3300012930\|Ga0137407_10594033	Not Available	1039	Open in IMG/M
3300015264\|Ga0137403_10135914	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2437	Open in IMG/M
3300015356\|Ga0134073_10345885	Not Available	545	Open in IMG/M
3300018429\|Ga0190272_10143005	Not Available	1631	Open in IMG/M
3300018429\|Ga0190272_10748231	Not Available	889	Open in IMG/M
3300018429\|Ga0190272_11257692	Not Available	732	Open in IMG/M
3300018432\|Ga0190275_11589615	Not Available	732	Open in IMG/M
3300018433\|Ga0066667_11272777	Not Available	642	Open in IMG/M
3300018466\|Ga0190268_10036230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1811	Open in IMG/M
3300018468\|Ga0066662_11962829	Not Available	613	Open in IMG/M
3300018482\|Ga0066669_11755880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → Sporichthya → unclassified Sporichthya → Sporichthya sp.	572	Open in IMG/M
3300019377\|Ga0190264_10735219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	737	Open in IMG/M
3300019377\|Ga0190264_11226503	Not Available	626	Open in IMG/M
3300019377\|Ga0190264_11298219	Not Available	614	Open in IMG/M
3300019377\|Ga0190264_11829139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → Sporichthya → unclassified Sporichthya → Sporichthya sp.	548	Open in IMG/M
3300020034\|Ga0193753_10280389	Not Available	726	Open in IMG/M
3300022724\|Ga0242665_10102337	Not Available	851	Open in IMG/M
3300024430\|Ga0196962_10012684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2532	Open in IMG/M
3300025922\|Ga0207646_10875454	Not Available	798	Open in IMG/M
3300025922\|Ga0207646_11684584	Not Available	545	Open in IMG/M
3300026089\|Ga0207648_11925619	Not Available	553	Open in IMG/M
3300026331\|Ga0209267_1104724	Not Available	1201	Open in IMG/M
3300026332\|Ga0209803_1106803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1137	Open in IMG/M
3300026532\|Ga0209160_1088558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1606	Open in IMG/M
3300027773\|Ga0209810_1075906	Not Available	1606	Open in IMG/M
3300027903\|Ga0209488_11184443	Not Available	516	Open in IMG/M
3300027986\|Ga0209168_10170809	Not Available	1096	Open in IMG/M
3300028536\|Ga0137415_10306024	Not Available	1394	Open in IMG/M
3300030606\|Ga0299906_10756832	Not Available	725	Open in IMG/M
3300030620\|Ga0302046_10995303	Not Available	667	Open in IMG/M
3300030620\|Ga0302046_11413872	Not Available	540	Open in IMG/M
3300030997\|Ga0073997_12073154	Not Available	909	Open in IMG/M
3300031229\|Ga0299913_10069044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3408	Open in IMG/M
3300031720\|Ga0307469_11032858	Not Available	769	Open in IMG/M
3300031820\|Ga0307473_10564920	Not Available	779	Open in IMG/M
3300031901\|Ga0307406_11076562	Not Available	693	Open in IMG/M
3300032180\|Ga0307471_100009335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6489	Open in IMG/M
3300032180\|Ga0307471_100070753	All Organisms → cellular organisms → Bacteria	3008	Open in IMG/M
3300032180\|Ga0307471_101315899	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300032180\|Ga0307471_104046085	Not Available	518	Open in IMG/M
3300033407\|Ga0214472_11666923	Not Available	540	Open in IMG/M
3300034681\|Ga0370546_033496	Not Available	740	Open in IMG/M
3300034681\|Ga0370546_036605	Not Available	718	Open in IMG/M
3300034681\|Ga0370546_074830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.59%
Host-Associated	Host-Associated	7.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.59%
Plants	Host-Associated → Plants	6.48%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.78%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.41%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.85%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.11%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	7.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.56%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.78%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1021662142	3300000956	Soil	MTTNDLQVLEGRQVSVALRNGSRIDDCQLVSAPRARTETVWLFSNGDDLFVSVTDVLDVWEVACTGRAA*
soilL1_100268383	3300003267	Sugarcane Root And Bulk Soil	MTSSSLHVLEGRQVSVALRNGSRIDDCQLVSAPRARTETLWLFSNGDDVFVSLTDVMDIWEVACTAHAA*
soilL1_100311462	3300003267	Sugarcane Root And Bulk Soil	MTNRSFQPFEGRQVCVALRNGSRIDDCQLVSAGRVSARTLWLFSNGLDVFVPIRQVLDVWEAPVAGRAA*
soilL1_100855722	3300003267	Sugarcane Root And Bulk Soil	MATKNFLGFEGRQVSVALRNGSRIDDCQLISAGRVETGTLWLFSNGMDVFVSIAQVLDVWEGPWRRS*
Ga0063356_1011418223	3300004463	Arabidopsis Thaliana Rhizosphere	MTGRTFQVFEGRQVCVALRDGSRVDDCQLVSAGRLPTDTLWLFSNGLDVFIPIGQ
Ga0066672_101671701	3300005167	Soil	RNGSRIDDCQLVCAPRARIETLWLFSNGADLFVDVGDVVDVWEVACTSQAA*
Ga0066672_102302733	3300005167	Soil	SVALSNGSRIDDCQLVSAPRAGAPTLWLFSNGDDVFVTLADVVDIWEASCTARAA*
Ga0066677_100043627	3300005171	Soil	MTNNLYGLEGRQVSVALSNGSRIDDCQLVSAPRAGAPTLWLFSNGDDVFVTLADVVDIWEASCTARAA*
Ga0066677_101582111	3300005171	Soil	MRKPEEEGGPMTDSSLHVFEGRQVSVALRNGSRIDDCQLVCAPRARIETLWLFSNGADLFVDVGD
Ga0066690_108306782	3300005177	Soil	MRKPEEEGGPMTDSSLHVFEGRQVSVALRNGSRIDDCQLVCAPRARIETLWLFSNGADLFVDVGDVVDVWEVACTSQAA*
Ga0066676_111811692	3300005186	Soil	MRSKPVRLLEGRQVCVALSNGSRIDDCQLVSAGRISTDTIWLFSNGADVFVSIDDVLDVWEAPGTTRAA*
Ga0070680_1012177411	3300005336	Corn Rhizosphere	VTRIKLHGLEGRQVSVALRNGSRLDDCQLVSAPRAGTATLWLFSNGDDVFVPAGDVVDVWEVACTGR
Ga0070692_107250301	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSNDGLQQWEGRQVSVALADGSRIDDCQLVSAPRARTETVWLFSNGDDLFVSVTDVLDVWEVACTGRAA*
Ga0070714_1001352594	3300005435	Agricultural Soil	MRKEATVTRIKLHGLEGRQVSVALRNGSRLDDCQLVSAPRAGTATLWLFSNGDDVFVPAGDVVDVWEVACTGRAA*
Ga0070705_1003399921	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSSLHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDVWEVACTARAA*
Ga0070708_1017735852	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTSERFHPFEGRRVSVALRNGSRIDDCQLVSAGRGSAGTLWLFSNGMDVFVPVRQVIDLWEAPVAGRAA*
Ga0066689_101737173	3300005447	Soil	YGLEGRQVSVALSNGSRIDDCQLVSAPRAGAPTLWLFSNGDDVFVTLADVVDIWEASCTARAA*
Ga0070681_101648601	3300005458	Corn Rhizosphere	VTRIKLHGLEGRQVSVALRNGSRLDDCQLVSAPRAGTATLWLFSNGDDVFVPAGDVVDVWEVACTGRAA*
Ga0070706_1007769832	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTGRTFQVFEGRQVCVALRDGSRIDDGQLVSAGRLPTHTLWLFSNGLDVFIPIGQVLDVWEAPAAGRAA*
Ga0070706_1016580631	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTSERFHPFEGRRVCLALRNGSRIDDCQLVSAGRGPAGTLWLFSNGMDVFVPVRQVIDLWEAPAAGRAA
Ga0070707_1002537173	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTKTRLHILEGRQVSVALRNGSRIDDCQLVSAGRATTQTVWLFSNGADVFVCRSDVLDVWEVAAAGRAA*
Ga0070707_1016044082	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSSLHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDVWEVACTAQAA*
Ga0070698_1021766001	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSSLHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDIWEVACTAQAA*
Ga0070741_1000027923	3300005529	Surface Soil	MTTIELHRLEGRQVGVALRNGARIDDCQLVAAPRVGTATLWLFSNGDDVFVAAGDVIDVWEVACTGRAA*
Ga0070741_100416334	3300005529	Surface Soil	MRKEATVTRIKLHGLEGRQVSVALRNGSRLDDCQLVSAPRAGTATLWLFSNGDDVFVPAGDVVEVWEVACTGRAA*
Ga0070741_100711511	3300005529	Surface Soil	MASRTYQTFEGRQVCVALRNGSRIDDCQLVSTGRDSTRTLWLFSNGMDLFVSIGQVLDVWEAPAAGRAA*
Ga0070741_101083603	3300005529	Surface Soil	MTNKSFLPFEGRRVCLALRNGSRIDDCQLVSAGRVSTETLWLFSNGIDVFVPIRQVIDLWEH*
Ga0070741_101770921	3300005529	Surface Soil	MTTRELHGLEGRQVSVALRDGTRIDDCQLVSAPRARTETVWLFSNGDDVFVGLADVVDIWEVACSGRAA*
Ga0070679_1016576151	3300005530	Corn Rhizosphere	MTTTDLHVLEGRQVSVALRHGSRIDDCQLVSAPRPRTATVWLFSNGDDLFVAVADVVDIWEVGCTRQAA*
Ga0070739_100756503	3300005532	Surface Soil	MTVTPFYGLEGRQVSVALRNGSRIDDCQLVSAPRAGASTLWLFSNGDDVFVSAGDVVDVWEVACTGRAA*
Ga0070697_1011877391	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTKTRLHILEGRQVSVALRNGSRIDDCQLVSAGRATTQTVWLFTNGADVFVSHSDVLDVWEVTAASRAA*
Ga0070696_1014900672	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LMTTNDLHVLEGRQVSVALRNGSRIDDCQLVCAPRASIETLWLFSNGADLFVSVGDVVDVWEAAYTSQAA*
Ga0066670_109705942	3300005560	Soil	MTRSSLHGLEGRRVSVALRNGCRIDDCQLVSAPRARTGTVWLFSNGDDVFVALADVI
Ga0068855_1023261311	3300005563	Corn Rhizosphere	MASRIYQTFEGRQVCVALRNGSRIDDCQLVSTGRDSTRTLWLFSNGMDLFISIGQVLDVWEAPAAGRAA*
Ga0066702_101628354	3300005575	Soil	GRQVSVALSNGSRIDDCQLVSAPRAGAPTLWLFSNGDDVFVTLADVVDIWEASCTARAA*
Ga0066654_101400782	3300005587	Soil	MSKTTLRILEGRQISLALRDGSRIDDCQLVSAGRATTETLWLFTSGHDVFVSLGDVLDVWEAAPSRAA*
Ga0075433_113788922	3300006852	Populus Rhizosphere	MRSGTVQSLEGRQVCVALSNGSRIDDCQLVSAGRVSTDTMWLFSNGADLFVSIDEVLDVWEAPAATQAA*
Ga0079216_111754612	3300006918	Agricultural Soil	MTNSDFYGLEGRQVSVALGNGSRIDDCQLVSAPRAGANTLWLFSNRDDVFVTLSDVVDIWEVACTARAA*
Ga0079219_106584441	3300006954	Agricultural Soil	MTSHRLHVLEGRQVSVALRDGSRIDDCQLVSAPRARAATLWLFSNGADLFVDAGDVVDVWERAYGRAA*
Ga0066710_1001519394	3300009012	Grasslands Soil	MRKPEEEGGPMTDSSLHVFEGRQVSVALRNGSRIDDCQLVCAPRARIETLWLFSNGADLFVDVGDVVDVWEVACTSQAA
Ga0066710_1009131552	3300009012	Grasslands Soil	MTNNLYGLEGRQVSVALSNGSRIDDCQLVSAPRAGAPTLWLFSNGDDVFVTLADVVDIWEASCTARAA
Ga0066709_1008842772	3300009137	Grasslands Soil	VTKTTVQVLEGRQVSLALRDGTRIDDCQLVSAGRTSTETLWLFTNGADVFVSFADVLDVWEAVAAGRAA*
Ga0066709_1023117172	3300009137	Grasslands Soil	MSSSTLHGLEGRQVSVALRNGCRIDDCQLVSAPRARTETVWLFSNGDDVFVSVADVVDIWEVACTARAA*
Ga0066709_1037663511	3300009137	Grasslands Soil	MRKPEEEGGPMTDSSLHVFEGRQVSVALRNGSRIDDCQLVCAPRARIETLWLFSNGADLFVDVGDVVHVWEVACTSQAA*
Ga0114129_127095232	3300009147	Populus Rhizosphere	MTSKSLQVLEGRQVSVALRDGCRIDDCQLVSAPRARAATLWLFSNGDDVFVDLSDVVDVWEVACTAHAA*
Ga0137391_114707481	3300011270	Vadose Zone Soil	MTSSSRGTGAQVRPASLYVLEGRQVSVALRDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACTGQAA*
Ga0153974_10797572	3300012180	Attine Ant Fungus Gardens	MTSRTFQAFEGRQVCVALRNGSRIDDCQLVSAGRVSTGTLWLFSNGMDVFVSIGQVLDVWEAPVARRAA*
Ga0137363_108998221	3300012202	Vadose Zone Soil	MTSSSRGTGAQVRPASLHGLEGRQVSVALSDGCRIDDCQLVCAPRARAETLWLFSNGADRFVSIGDVVDVWEVACTGRAA*
Ga0137374_106478263	3300012204	Vadose Zone Soil	MTISNLYGLEGRQVSVALGNGSRIDDCQLVSAPRAGAQTLWLFSNGDDVFVTLSDVVDIWEVACTAHAA*
Ga0137374_107750911	3300012204	Vadose Zone Soil	NYALRKERRPAVSRTTLQLLEGRQVSVALRDGSRIDDCQLVSAARATTATLWLFTNGDDVFVPIDDIIHVWEPALAGRAA*
Ga0137374_111618461	3300012204	Vadose Zone Soil	SKSLQVLEGRQVSVALRNGSRIDDCQLVCAPRARTETLWLFSNGADLFVSVGDVVDVWEEACTGRAA*
Ga0150985_1133474243	3300012212	Avena Fatua Rhizosphere	VTKSTVQLLEGRRVSLALRDGSRIDDCQLVSAGRATTETLWLFTNGADVFVSLGDVLDLWEPPVAGRPA*
Ga0137370_103515722	3300012285	Vadose Zone Soil	MTRSSLHGLEGRRVSVALRNGCRIDDCQLVSAPRARTGTVWLFSNGDDVFVAWADVIDIWEVACTARAA*
Ga0137370_103546453	3300012285	Vadose Zone Soil	VTRTTLQLLEGRQVSVALRDGSRIDDCQLVSAARATTATLWLFTNGDDVFVPIDDIIDVWEPAFAGRAA*
Ga0137375_112902671	3300012360	Vadose Zone Soil	KKRRIAVTKTNLQLLEGRQVSVALRDGSRIDDCQLVSAARATTATLWLFTNGDDVFVPIDDIIDVWEPALAGRAA*
Ga0137390_103336733	3300012363	Vadose Zone Soil	MTITLYGLEGRQVSVALRNGSRIDDCQLVSAPRPGTATLWLFSNGDDLFVEVGEVVDVWEVACTSRAA*
Ga0137373_105053102	3300012532	Vadose Zone Soil	VSRTTLQLLEGRQVSVALRDGSRIDDCQLVSAARATTATLWLFTNGDDVFVPIDDIIHVWEPALAGRAA*
Ga0137373_108439201	3300012532	Vadose Zone Soil	GLEGRQVSVALGNGSRIDDCQLVSAPRAGAQTLWLFSNGDDVFVTLSDVVDIWEVACTRRAA*
Ga0137398_109597021	3300012683	Vadose Zone Soil	MTSSSSRGTGAQVRPASLHGLEGRQVSVALSDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACAGRAA*
Ga0137413_117137152	3300012924	Vadose Zone Soil	MTSSSRGTGAQVRPASLHGLEGRQVSVALSDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACAGRAA*
Ga0137416_102935173	3300012927	Vadose Zone Soil	MTDSSRGTGAQVRPASLHGLEGRQVSVALSDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACTRQAA*
Ga0137416_109528953	3300012927	Vadose Zone Soil	MTITLYGLEGRQVSVALRNGSRIDDCQLVSAPRPGTATLWLFSNGDDLFVEAGDVVDVWEVACTSRAACTGRAA*
Ga0137404_100797661	3300012929	Vadose Zone Soil	RRAGAMTSSSLHGLEGRQVSVALRDGDRIDDCQLVCAPRARAETLWLFSNGSDLFVSLTDVVDVWEAACTGRAA*
Ga0137404_114974661	3300012929	Vadose Zone Soil	MTSSSRGTGAQVRPASLHGLEGRQVSVGLSDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACAGR
Ga0137407_105940332	3300012930	Vadose Zone Soil	MTSSSRGTGAQVRPASLYVLEGRQVSVALSDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACAGRAA*
Ga0137403_101359141	3300015264	Vadose Zone Soil	MTDKSRGTGAQVRPASLHGLEGRQVSVALSDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACAGRAA*
Ga0134073_103458851	3300015356	Grasslands Soil	TRRKEGGTMSSSLHGLEGRQVSVALRNGSRIDDCQLVSAPRARTETVWLFSNGDDVFVSLGDVVDIWEVACTGRAA*
Ga0190272_101430053	3300018429	Soil	MTTNDLHVLEGRQVSVALCNGSRIDDCQLVSAPRARTETMWLFSNGDDLFVSVTDVIDVWEVACTGRAA
Ga0190272_107482313	3300018429	Soil	EGRQVSVALRNGSRIDDCQLVSAPRARTETVWLFSNGADLFVSVGAVFDKRKEACTRQAA
Ga0190272_112576922	3300018429	Soil	VTKTTLQLLEGRQVSVALRDGSRIDDCQLVSAARATTATLWLFTNGDDVFVPIDDIIDVWEPALGRAA
Ga0190275_115896152	3300018432	Soil	MTITSLHVLEGRQVSVALRDGSRIDDCQLVSVPRARTETVWLFSNGDDLFVSVGDVIDVWEVACTSQAA
Ga0066667_112727771	3300018433	Grasslands Soil	SVALRNGSRIDDCQLVSAPRARTETVWLFSNGDDVFVSLGDVVDIWEVACTGRAA
Ga0190268_100362303	3300018466	Soil	MTSSSLHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDVWEVTCTAQAA
Ga0066662_119628291	3300018468	Grasslands Soil	SLHVFEGRQVSVALRNGSRIDDCQLVCAPRARIETLWLFSNGADLFVDVGDVVDVWEVACTSQAA
Ga0066669_117558801	3300018482	Grasslands Soil	MTRSSLPGLEGRRVSVALRNGCRIDDCQLVSAPRARTGTVWLFSNGDDVFVAWADVIDIWEVACTARAA
Ga0190264_107352192	3300019377	Soil	MSHHQLHQLQGRQVSVALRDGNRIDDCQLVSAGRAGTATLWLFTNGTDLFVPEDQVLAVWECPLARAA
Ga0190264_112265032	3300019377	Soil	MTSSSLHGLEGRQVSVALRNGRRIDDCQLVSAPRARTETMWLFSNGDDVFVSLADVIDVWEVACTAQAA
Ga0190264_112982191	3300019377	Soil	MTSNSLQGLEGRQVSVALRNGCRIDDCQLVSAPRARAETVWLFSNGDDVFVS
Ga0190264_118291392	3300019377	Soil	MTSSSLHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDIWEVACTSKAA
Ga0193753_102803892	3300020034	Soil	MTSNILHGLEGRQVSVALRDGCRIDDCQLVCAPRARTETLWLFSNGSDLFVSLTDVVDVWEAACTGRAA
Ga0242665_101023373	3300022724	Soil	MTSSSLHVLEGRQVSVALRDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACTSQAA
Ga0196962_100126843	3300024430	Soil	MTSGSLHELEGRQVSVALRDGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDVWEVACTAQAA
Ga0207646_108754541	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VALRNGNRIDDCQLVCAPRARAETLWLFSNGTDVFVSAGDVLDIWEVSCTGQAA
Ga0207646_116845842	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSSLHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDVWEVACTAQAA
Ga0207648_119256192	3300026089	Miscanthus Rhizosphere	MTTNDLHVFEGRQVSVALRNGSRIDDCQLVSAPRAQRTGTVWLFSNGDDLFVSLTDVVDVWEVACTGRAA
Ga0209267_11047242	3300026331	Soil	MTNNLYGLEGRQVSVALSNGSRIDDCQLVSAPRAGAPTLWLFSNGDDVFVTLADVVDIWA
Ga0209803_11068033	3300026332	Soil	GLEGRQVSVALSNGSRIDDCQLVSAPRAGAPTLWLFSNGDDVFVTLADVVDIWEASCTARAA
Ga0209160_10885584	3300026532	Soil	NGSRIDDCQLVCAPRARIETLWLFSNGADLFVDVGDVVDVWEVACTSQAA
Ga0209810_10759063	3300027773	Surface Soil	MTVTPFYGLEGRQVSVALRNGSRIDDCQLVSAPRAGASTLWLFSNGDDVFVSAGDVVDVWEVACTGRAA
Ga0209488_111844431	3300027903	Vadose Zone Soil	MTSSSRGTGAQVRPASLHGLEGRQVSVALSDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACAGRAA
Ga0209168_101708092	3300027986	Surface Soil	MASRTYQTFEGRQVCVALRNGSRIDDCQLVSTGRDSTRTLWLFSNGMDLFVSIGQVLDVWEAPAAGRAA
Ga0137415_103060243	3300028536	Vadose Zone Soil	MTSSSRGTGAQVRPASLHGLEGRQVSVALSDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVADVVDVWEVACTRQAA
Ga0299906_107568322	3300030606	Soil	MSRSTLRILEGQQVSVALRDGARIDDCQLVSAGRATTSTLWLFSNGADVFVDLGDVVEVWEAPLTGQAA
Ga0302046_109953032	3300030620	Soil	VTKTTLQLLEGRQVSVALRDGSRIDDCQLVSAARATTATLWLFTNGDDVFVPIDDIIDVREPALVGRAA
Ga0302046_114138721	3300030620	Soil	LEGQQVSVALRDGARIDDCQLVSAGRATTSTLWLFSNGADVFVDLGDVVEVWEAPLTGQA
Ga0073997_120731543	3300030997	Soil	RAGAAEPPRKEEGGPMTSSSLYVLEGRQVSVALRDGCRIDDCQLVCAPRARAETLWLFSNGADLFVSVGDVVDVWEVACAGRAA
Ga0299913_100690442	3300031229	Soil	MTSSSLHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDLWEVACTAQAA
Ga0307469_110328582	3300031720	Hardwood Forest Soil	MTSKSLQVLEGRQVSVALRDGCRIDDCQLVSAPRARAATLWLFSNGDDVFVDLSDVVDVWEVACTAHAA
Ga0307473_105649203	3300031820	Hardwood Forest Soil	GSPVMTKNRLHILEGRQVSVALRDGSRIDDCHLVSAARATTATLWLFANGDDLFVSLDDVVDVWEPAFAGRAA
Ga0307406_110765622	3300031901	Rhizosphere	MTSSSFHGLEGRQVSVALRNGNRIDDCQLVSAPRARTETVWLFSNGDDVFVSLADVIDVWEVACTARAA
Ga0307471_1000093353	3300032180	Hardwood Forest Soil	MTRNRLHILEGRQVSVALRDGSRIDDCQLVSAARATTATLWLFANGDDLFVSLDDVVDVWEPAFAGRAA
Ga0307471_1000707532	3300032180	Hardwood Forest Soil	MTNQMRRLEGRQVSVSLRGGDRLDACQLISGSRSGTGTVWLFWNGIDVFIPVEDVIDVWEVPASQVA
Ga0307471_1013158992	3300032180	Hardwood Forest Soil	MSAATLQEFEGRRVSVALRDGGRIDDCQLVSAGRAGTTTLWLFTNGLDVFIPLVDVTDIWETLAAGRAA
Ga0307471_1040460851	3300032180	Hardwood Forest Soil	CVRLERRAKMTSRSLQMLEGRQVSVALRNGCRIDDCQLVSAPRARTETLWLFSNGHDVFVSVGDVVDVWEVACTGRAA
Ga0214472_116669232	3300033407	Soil	MTSQKLQLFEGRQVSVALQDGNRIDDCQLVSAGRSKTATLWLFTNGTDLFVPQSDVIDIWEMPARRAA
Ga0370546_033496_507_716	3300034681	Soil	MTITSLHVLEGRQVSVALRDGSRIDDCQLVSAPRARTETVWLFSNGADLFVSVGDVIDVWEVAYTSQAA
Ga0370546_036605_498_707	3300034681	Soil	VTRTTLQLLEGRQVSVALRDGSRIDDCQLVSAARATAATLWLFTNGDDVFVPIDDIIDVWEPALAGRAA
Ga0370546_074830_339_548	3300034681	Soil	MTKTTLQVFEGRQVSLALRDGSRIDDCQLVSAGRAAIATLWLFTNGDDIFVSLDDVLDVWEPAVVGRAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090012

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences