Metagenome / Metatranscriptome Family F089941

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089941
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	88 residues
Representative Sequence	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFSAPGALGSTPSGPCARCKRPNPCIGERPA
Number of Associated Samples	97
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	36.11 %
% of genes near scaffold ends (potentially truncated)	28.70 %
% of genes from short scaffolds (< 2000 bps)	69.44 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.074 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.926 % of family members)
Environment Ontology (ENVO)	Unclassified (46.296 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.90% β-sheet: 11.21% Coil/Unstructured: 56.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
a.4.5.34: SCF ubiquitin ligase complex WHB domain	d1ldda_	1ldd	0.64924
a.4.5.14: Forkhead DNA-binding domain	d1vtnc1	1vtn	0.63831
a.4.5.19: Z-DNA binding domain	d1xmka1	1xmk	0.63036
a.4.5.19: Z-DNA binding domain	d1qbja_	1qbj	0.62803
a.4.5.70: Marine metagenome family WH1	d2od5a1	2od5	0.6225

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF17167	Glyco_hydro_36	29.63
PF08299	Bac_DnaA_C	20.37
PF11638	DnaA_N	11.11
PF00487	FA_desaturase	0.93
PF01425	Amidase	0.93
PF00691	OmpA	0.93
PF01255	Prenyltransf	0.93
PF08352	oligo_HPY	0.93
PF02777	Sod_Fe_C	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	20.37
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	0.93
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.93
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.93
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.07 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	75.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	75.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	75.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	75.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	75.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002122\|C687J26623_10072075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	939	Open in IMG/M
3300004062\|Ga0055500_10171695	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300004463\|Ga0063356_104502376	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	599	Open in IMG/M
3300005294\|Ga0065705_10766707	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300005549\|Ga0070704_100170815	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1729	Open in IMG/M
3300005875\|Ga0075293_1011457	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1022	Open in IMG/M
3300005878\|Ga0075297_1000241	All Organisms → cellular organisms → Bacteria	2733	Open in IMG/M
3300005883\|Ga0075299_1014850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	719	Open in IMG/M
3300007004\|Ga0079218_13878503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300009038\|Ga0099829_10000147	All Organisms → cellular organisms → Bacteria	34884	Open in IMG/M
3300009053\|Ga0105095_10217718	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300009087\|Ga0105107_10548556	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	805	Open in IMG/M
3300009147\|Ga0114129_10144731	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3256	Open in IMG/M
3300010391\|Ga0136847_12044383	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	721	Open in IMG/M
3300011397\|Ga0137444_1047346	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300011410\|Ga0137440_1069654	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	695	Open in IMG/M
3300011419\|Ga0137446_1010732	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1731	Open in IMG/M
3300011429\|Ga0137455_1114723	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	794	Open in IMG/M
3300011438\|Ga0137451_1035657	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1447	Open in IMG/M
3300011442\|Ga0137437_1287821	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	562	Open in IMG/M
3300011443\|Ga0137457_1073234	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1046	Open in IMG/M
3300012164\|Ga0137352_1020187	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300012179\|Ga0137334_1040316	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	971	Open in IMG/M
3300012211\|Ga0137377_11623541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	570	Open in IMG/M
3300012225\|Ga0137434_1050278	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	634	Open in IMG/M
3300012685\|Ga0137397_10034298	All Organisms → cellular organisms → Bacteria	3622	Open in IMG/M
3300012922\|Ga0137394_10164588	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300012927\|Ga0137416_10072748	All Organisms → cellular organisms → Bacteria	2499	Open in IMG/M
3300012930\|Ga0137407_10185474	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1859	Open in IMG/M
3300014877\|Ga0180074_1152334	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300014884\|Ga0180104_1025023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1502	Open in IMG/M
3300014885\|Ga0180063_1041718	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1304	Open in IMG/M
3300015259\|Ga0180085_1073466	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300015264\|Ga0137403_10011219	All Organisms → cellular organisms → Bacteria	9887	Open in IMG/M
3300017997\|Ga0184610_1000745	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7415	Open in IMG/M
3300018000\|Ga0184604_10000228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5240	Open in IMG/M
3300018027\|Ga0184605_10044693	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300018028\|Ga0184608_10005998	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3950	Open in IMG/M
3300018031\|Ga0184634_10080885	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1396	Open in IMG/M
3300018061\|Ga0184619_10190535	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	941	Open in IMG/M
3300018066\|Ga0184617_1068374	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	940	Open in IMG/M
3300018068\|Ga0184636_1188320	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	730	Open in IMG/M
3300018070\|Ga0184631_10181801	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	858	Open in IMG/M
3300018071\|Ga0184618_10023630	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2042	Open in IMG/M
3300018076\|Ga0184609_10553762	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	519	Open in IMG/M
3300018078\|Ga0184612_10369075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300018422\|Ga0190265_10013493	All Organisms → cellular organisms → Bacteria	6258	Open in IMG/M
3300018422\|Ga0190265_10025817	All Organisms → cellular organisms → Bacteria	4785	Open in IMG/M
3300018422\|Ga0190265_11582589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300018429\|Ga0190272_10100108	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1859	Open in IMG/M
3300018429\|Ga0190272_10142577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1633	Open in IMG/M
3300018429\|Ga0190272_10494875	All Organisms → Viruses → Predicted Viral	1036	Open in IMG/M
3300019249\|Ga0184648_1367565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1015	Open in IMG/M
3300019255\|Ga0184643_1014354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	935	Open in IMG/M
3300019269\|Ga0184644_1575606	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	549	Open in IMG/M
3300019279\|Ga0184642_1422391	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	515	Open in IMG/M
3300019458\|Ga0187892_10013838	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9191	Open in IMG/M
3300019878\|Ga0193715_1067491	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300019879\|Ga0193723_1008526	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3341	Open in IMG/M
3300019881\|Ga0193707_1004231	All Organisms → cellular organisms → Bacteria	5114	Open in IMG/M
3300019882\|Ga0193713_1144799	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	641	Open in IMG/M
3300019883\|Ga0193725_1000768	All Organisms → cellular organisms → Bacteria	9148	Open in IMG/M
3300019883\|Ga0193725_1001791	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6199	Open in IMG/M
3300019883\|Ga0193725_1049195	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1081	Open in IMG/M
3300019886\|Ga0193727_1009421	All Organisms → cellular organisms → Bacteria	3810	Open in IMG/M
3300020004\|Ga0193755_1006645	All Organisms → cellular organisms → Bacteria	3749	Open in IMG/M
3300020063\|Ga0180118_1154053	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	890	Open in IMG/M
3300020067\|Ga0180109_1190335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	646	Open in IMG/M
3300020170\|Ga0179594_10301589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300021073\|Ga0210378_10016742	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2991	Open in IMG/M
3300021073\|Ga0210378_10286983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	619	Open in IMG/M
3300021080\|Ga0210382_10065116	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1464	Open in IMG/M
3300021090\|Ga0210377_10015244	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	5770	Open in IMG/M
3300021344\|Ga0193719_10013164	All Organisms → cellular organisms → Bacteria	3487	Open in IMG/M
3300021972\|Ga0193737_1041584	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	660	Open in IMG/M
3300022534\|Ga0224452_1200911	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300024347\|Ga0179591_1195011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2895	Open in IMG/M
3300025165\|Ga0209108_10100071	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1564	Open in IMG/M
3300025324\|Ga0209640_10003419	All Organisms → cellular organisms → Bacteria	13862	Open in IMG/M
3300025324\|Ga0209640_10003606	All Organisms → cellular organisms → Bacteria	13530	Open in IMG/M
3300025999\|Ga0208417_102574	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	791	Open in IMG/M
3300026001\|Ga0208000_102483	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	988	Open in IMG/M
3300026371\|Ga0257179_1003054	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1414	Open in IMG/M
3300026557\|Ga0179587_10957931	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300027815\|Ga0209726_10107691	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1664	Open in IMG/M
3300028536\|Ga0137415_10098899	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2770	Open in IMG/M
3300028711\|Ga0307293_10151594	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	737	Open in IMG/M
3300028716\|Ga0307311_10040824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1215	Open in IMG/M
3300028784\|Ga0307282_10082417	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1475	Open in IMG/M
3300028787\|Ga0307323_10139218	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	875	Open in IMG/M
3300028792\|Ga0307504_10104997	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	905	Open in IMG/M
3300028792\|Ga0307504_10484416	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	501	Open in IMG/M
3300028803\|Ga0307281_10009307	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2712	Open in IMG/M
3300028807\|Ga0307305_10052692	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1873	Open in IMG/M
3300028819\|Ga0307296_10405589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	745	Open in IMG/M
3300028828\|Ga0307312_10033104	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3023	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1002348	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3527	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1032647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1085	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10009361	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2522	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10026506	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1017952	All Organisms → cellular organisms → Bacteria	1691	Open in IMG/M
3300031455\|Ga0307505_10178482	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300031720\|Ga0307469_10091373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2103	Open in IMG/M
3300031740\|Ga0307468_100028038	All Organisms → cellular organisms → Bacteria	2630	Open in IMG/M
3300032174\|Ga0307470_10054718	All Organisms → cellular organisms → Bacteria	2065	Open in IMG/M
3300032180\|Ga0307471_104013154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300033233\|Ga0334722_10138762	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1826	Open in IMG/M
3300033813\|Ga0364928_0064404	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	824	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.15%
Host-Associated	Host-Associated	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.33%
Aquatic	Environmental → Aquatic	39.81%
Plants	Host-Associated → Plants	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.48%
Sediment	Environmental → Aquatic → Sediment	25.00%
Freshwater	Environmental → Aquatic → Freshwater	13.89%
Marine	Environmental → Aquatic → Marine	0.93%
Cave	Environmental → Terrestrial → Cave	0.93%
Floodplain	Environmental → Terrestrial → Floodplain	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	25.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	11.11%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.63%
Sand	Environmental → Terrestrial → Soil → Sand	4.63%
Loam	Environmental → Terrestrial → Soil → Loam	3.70%
Lake	Environmental → Aquatic → Freshwater → Lake	1.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	25.00%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	11.11%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.85%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	12.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	11.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.19%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	9.26%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	4.63%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	4.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300005878	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104	Environmental	Open in IMG/M
3300005883	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011397	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT319_2	Environmental	Open in IMG/M
3300011410	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012164	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025999	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201 (SPAdes)	Environmental	Open in IMG/M
3300026001	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104 (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
C687J26623_100720752	3300002122	Soil	VTVTYTTEDFVRRAVGRMLGSRHPGDGICAACLVGMTLERLHTGWRRSEIELAMGKVFTIPGALDRLPTGPCARCKRSMPCLGRSS*
Ga0055500_101716952	3300004062	Natural And Restored Wetlands	REHVEVRRGVPMTAATYTTEDFVRLTIGRLLRGRYRGGAVCSRCLVGMTLERLHAGWRKSELEHAMEKVFNAPGALESVSGGPCARCKRPEPCIRDPAS*
Ga0063356_1045023762	3300004463	Arabidopsis Thaliana Rhizosphere	MTAPMTAVTYTTEDFVRRTVGRLLRGRYHGGLVCSGCLVGMTLERLHTGWRRSEIEQAMEKVFGAPGALGSVSSGPCARCKRPDPCIGEHAP
Ga0065705_107667072	3300005294	Switchgrass Rhizosphere	MTAVTYTTEDFVRRTIGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA*
Ga0070704_1001708152	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTAVTYTTEDFVRRTIGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFSAPGALGSTPSGPCARCKRPNPCIGERPA*
Ga0075293_10114572	3300005875	Rice Paddy Soil	VTITYTTEDFVRRAVGSVLHGKYQGRFVCSSCLVRMTLERLQTGWRQSEIELAMEKVFKAPGAINYVPTCPCARCRQSLPCLGEPYR*
Ga0075297_10002416	3300005878	Rice Paddy Soil	VPRGAGSVTITYTTEDFVRRAVGSVLHGKYHGRFVCSSCLVRMTLERLQTGWRQSEIELAMEKVFKAPGAINYIPTCPCARCRQSLPCLGEPYR*
Ga0075299_10148501	3300005883	Rice Paddy Soil	TTEDFVRRAVGSVLHGKYHGRFVCSSCLVRMTLERLQTGWRQSEIELAMEKVFKAPGAINYIPTCPCARCRQSLPCLGEPYR*
Ga0079218_138785032	3300007004	Agricultural Soil	VTAAAYTTEEFVRRTVAGLLRGRYRGGAVCSRCLVGMTLECLHAGWRRSEIEHAMEKVFAAPGALGRESGGPCARCKRPEPCIGAPASPPLGSL*
Ga0099829_1000014730	3300009038	Vadose Zone Soil	MVTYTTEDFVRRAVGRVLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSVGPCARCKRPTPCLGEHPS*
Ga0105095_102177182	3300009053	Freshwater Sediment	VRDGAAVVTYTTEEFVRRTVGRLLRGKYRGQVVCAPCLVGMTLERLHTGWRKSEIEHAMTGLFKTPGTLRCLPAGPCARCRRPNPSVGEHPS*
Ga0105107_105485562	3300009087	Freshwater Sediment	MTAPVTAVTYTTEDFVRRTVGRLLRGRYHGGLVCSGCLVGMTLERLHTGWRRSEIEQAMEKVFDAPGALNVSSGPCARCKRPNPCIGDPAS*
Ga0114129_101447313	3300009147	Populus Rhizosphere	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFSAPGALGSTPSGPCARCKRPNPCIGERPA*
Ga0136847_120443831	3300010391	Freshwater Sediment	EDFVRRTVGRLLRGQYQGRVVCSVCLVGMTLERLHTGWRRSEIEQAMEKVFSVPGPLGSVSGGPCARCKRPNPCIGERAS*
Ga0137444_10473462	3300011397	Soil	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFRTPGALKAMSDGPCARCKRPTPCLGEHPS*
Ga0137440_10696542	3300011410	Soil	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS*
Ga0137446_10107323	3300011419	Soil	MVTYTTEDFVRRAVGRVIHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS*
Ga0137455_11147232	3300011429	Soil	MLTYTTEDFVRRAVGWLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS*
Ga0137451_10356572	3300011438	Soil	MVTYTTEDFVRRAAGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSVGPCARCKRPTPCLGEHPS*
Ga0137437_12878211	3300011442	Soil	VTAPVTAVTYTTEDFVRRTVGRMLRGRYQGGVVCSTCLVGMTLERLHTGWRRSEIEHAMEKVFSAPGELGGVSSGPCARCKRPNPCIGEHAS*
Ga0137457_10732343	3300011443	Soil	LRVIEMLTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS*
Ga0137352_10201873	3300012164	Soil	GSADPRAPGFTDLRVIEMVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKAESEQAMEKVFRTPGTLKAMSDGPCARCKRPAPCLGEPPS*
Ga0137334_10403163	3300012179	Soil	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFQTPGALKAMSDGPCARCKRPTPCLGEHPS*
Ga0137377_116235412	3300012211	Vadose Zone Soil	VTIPVTAATYTTEDFVRRAVGRLLRDKYRGGGVCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGMLGSTPSGPCARCKRANPCIGERLA*
Ga0137434_10502782	3300012225	Soil	MVTYTTEDFVRRTVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALRAMSDGPCARCKRPTPCLGEHPS*
Ga0137397_100342983	3300012685	Vadose Zone Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPSPCIGERQA*
Ga0137394_101645882	3300012922	Vadose Zone Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA*
Ga0137416_100727482	3300012927	Vadose Zone Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLFGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA*
Ga0137407_101854741	3300012930	Vadose Zone Soil	SRPAGSIGVTIPMTAVTYTTEDFVRRTIGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA*
Ga0180074_11523341	3300014877	Soil	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHP
Ga0180104_10250233	3300014884	Soil	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFRTPGTLKAMSDGPCARCKRPTPCLGEHPS*
Ga0180063_10417183	3300014885	Soil	VTIPATAVTYTTEDFVRRTVGRLLRGRYQSGVVCSACLVGMTLERLHTGWRKSEIEQAMEKVFNAPGALGSVSSGPCARCKRPNPCIGERSA*
Ga0180085_10734661	3300015259	Soil	RLLHDKYHGGVVCSWCLVGMTLERLHTGWRKAEIEQAMEKVFRTPGTLKAMSDGPCARCKRPAPCLGEPPS*
Ga0137403_100112193	3300015264	Vadose Zone Soil	MTAVTYTTEDFVRRTIGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPSPCIGERQA*
Ga0184610_10007453	3300017997	Groundwater Sediment	MVTYTTEDLVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0184604_100002283	3300018000	Groundwater Sediment	MTAVTYTTEDFVRRTIGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCSRCKRPNPCIGERPA
Ga0184605_100446932	3300018027	Groundwater Sediment	MTAVTYTTEDFVRRMVGQLLRGKYRGGGLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0184608_100059983	3300018028	Groundwater Sediment	MTAVTYTTEDFVRRMVGQLLRGKYRGGRLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0184634_100808853	3300018031	Groundwater Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0184619_101905352	3300018061	Groundwater Sediment	MTAVTYTTEDFVRRMVGQLLRGKYRGGGLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALESTPSGPCARCKRPNPCIGERPA
Ga0184617_10683742	3300018066	Groundwater Sediment	MVAVTYTTEDFVRRMVGQLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0184636_11883202	3300018068	Groundwater Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPT
Ga0184631_101818012	3300018070	Groundwater Sediment	MVTYTTEDFVRRAVGRVLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0184618_100236302	3300018071	Groundwater Sediment	MTAVTYTTEDFVRRMVGQLLRGKYRGGGLCSWCLVGLTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0184609_105537622	3300018076	Groundwater Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARC
Ga0184612_103690752	3300018078	Groundwater Sediment	MVTYTTEDLVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCTRPTPCLGEHPS
Ga0190265_1001349311	3300018422	Soil	AHSRRATGVSGMGAVTVTYTTEDFVRRAVSGMLAGQYRGGVVCSSCLVRMTLERLHSGWRRSEIELAMGKVFEAPGALGLVPTGPCARCKRPMPCVGRAP
Ga0190265_100258173	3300018422	Soil	MTGVSYTTEDFVRRTVGRLLQGKYRGGAVCSGCLVGMTLEQLHTGWRRSEIEHAMEKVFNAPGALGSASDGPCARCRRPNPCIGGRPS
Ga0190265_115825891	3300018422	Soil	RAARRADSRPPGFIRMTAPATAVTYTTEDFVRLTVGRLLRGRYQRGAVCSGCLVGMTLERLHTGWRKSEIEQGMEKVFNVPGALGLVSGGPCARCKRPGPCIGERAA
Ga0190272_101001083	3300018429	Soil	MVTYTTEDFVRRTVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMERVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0190272_101425773	3300018429	Soil	VTAPATAVTYTTEDFVRRTVGRLLRGRYQGGVVCSGCLVGMTLERLHTGWRKSEIEQAMEKVFSVPGALGSVSDGPCARCKRPNPCIGEHAA
Ga0190272_104948752	3300018429	Soil	MTAVTYTTEDFVRRMGGRLLRGKYRGGGLCSWCLVGLTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0184648_13675652	3300019249	Groundwater Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSVGPCARCKRPTPCLGEHPS
Ga0184643_10143542	3300019255	Groundwater Sediment	MVAVTYTTEDFVRRMVGQLLRGKYRGGRLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA
Ga0184644_15756062	3300019269	Groundwater Sediment	PAGSIGVTIPMTAVTYTTEDFVRRMVGQLLRGKYRGGGLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0184642_14223911	3300019279	Groundwater Sediment	TEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFSAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0187892_100138388	3300019458	Bio-Ooze	MITYTTEDFVRRAIGRLLHDKYRGGVVCSGCLIGMTLERLHAGWRKSEIERAMEKVFGTPGRLESMADGPCARCKRPAPCLGEPRS
Ga0193715_10674912	3300019878	Soil	MTAVTYTTEDFVRRMVGQLLRGKYRGGGLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKR
Ga0193723_10085262	3300019879	Soil	MVTYTTEDFVRRMVGRLLGGRYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMGKVFDTPGDLGVTPSGPCARCNRPSPSIGEHPA
Ga0193707_10042316	3300019881	Soil	MTAVTYTTEDFVRRMVGRLLRGKYRGGGLCSWCLVGLTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA
Ga0193713_11447992	3300019882	Soil	MTAVTYTTEDFVRRMVGRLLRGKYRGGGLCSWCLVGLTLERLHTGWRKSEIEHAMEKVFNAPGALGSNLSGPCA
Ga0193725_10007683	3300019883	Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHIGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA
Ga0193725_10017913	3300019883	Soil	MVTYTTEDFVRRAVGRVLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSVGPCARCKRPTPCLGEHPS
Ga0193725_10491951	3300019883	Soil	AGVLRVTEPGTMVTYTTEDFVRRMVGRLLGGRYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMGKVFDTPGDLGVTPSGPCARCNRPSPSIGEHPA
Ga0193727_10094212	3300019886	Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA
Ga0193755_10066455	3300020004	Soil	MTAVTYTTEDFVRRMVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA
Ga0180118_11540531	3300020063	Groundwater Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKAEIEQAMEKVFRTPGTLKAMSDGPCARCKRPAPCLGEPPS
Ga0180109_11903353	3300020067	Groundwater Sediment	RLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0179594_103015892	3300020170	Vadose Zone Soil	MTAVTYTTEDFVRRTVGLLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA
Ga0210378_100167425	3300021073	Groundwater Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVICSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0210378_102869832	3300021073	Groundwater Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTSCLGEHPS
Ga0210382_100651161	3300021080	Groundwater Sediment	TAVTYTTEDFVRRMVGQLLRGKYRGGGLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0210377_100152444	3300021090	Groundwater Sediment	MVTYTTEDFVRRTVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0193719_100131643	3300021344	Soil	MVTYTTEDFVRRMVGRLLGGRYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMGKVFDTPGDLGVTPSGPCARCNRPSPSIGEHSA
Ga0193737_10415841	3300021972	Soil	SADPRAPGFTDLRVIEMVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0224452_12009112	3300022534	Groundwater Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEDRS
Ga0179591_11950111	3300024347	Vadose Zone Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPSPCIGERQA
Ga0209108_101000713	3300025165	Soil	VTVTYTTEDFVRRAVGRLLGSRHRGDGICSACLVGMTLERLHTGWRRSEIELAMGKVFTIPGALDRLPTGPCARCKRSMPCLGRSS
Ga0209640_100034198	3300025324	Soil	VTVTYTTEDFVRRAVGRMLGSRHPGDGICAACLVGMTLERLHTGWRRSEIELAMGKVFTIPGALDRLPTGPCARCKRSMPCLGRSS
Ga0209640_100036066	3300025324	Soil	MVTYTTEDFVRRAVGRLLHDKYHGGAVCSWCLVGMTLERLHTGWRKAEIEQAMEKVFRTPGTLKAMSDGPCSRCKRPTSCLGEPPS
Ga0208417_1025742	3300025999	Rice Paddy Soil	VTITYTTEDFVRRAVGSVLHGKYHGRFVCSSCLVRMTLERLQTGWRQSEIELAMEKVFKAPGAINYIPTCPCARCRQSLPCLGEPYR
Ga0208000_1024833	3300026001	Rice Paddy Soil	VPRGAGSVTITYTTEDFVRRAVGSVLHGKYHGRFVCSSCLVRMTLERLQTGWRQSEIELAMEKVFKAPGAINYIPTCPCARCRQSLPCLGEPYR
Ga0257179_10030543	3300026371	Soil	IEMVTYTTEDFVRRAVGRVLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKAMSVGPCARCKRPTPCLGEHPS
Ga0179587_109579311	3300026557	Vadose Zone Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPC
Ga0209726_101076913	3300027815	Groundwater	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIVQAMEKVFKTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0137415_100988993	3300028536	Vadose Zone Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLFGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERQA
Ga0307293_101515941	3300028711	Soil	EDFVRRMVGQLLRGKYRGGRLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0307311_100408243	3300028716	Soil	MVAVTYTTEDFVRRMVGQLLRGKYRGGRLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0307282_100824173	3300028784	Soil	MTAVTYTTEDFVRRMVGQLLRGKYRGGRLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFSAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0307323_101392183	3300028787	Soil	SDRSRGRADSRPAGSIGVTIPMTAVTYTTEDFVRRMVGQLLRGKYRGGGLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0307504_101049972	3300028792	Soil	VTELETMVTYTTEDFVRRMVGRLLGGRYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMGKVFDTPGDLGVTPSGPCARCNRPSPSIGEHPA
Ga0307504_104844162	3300028792	Soil	VTEPGTMGTYTTEDFVRRTIGRLLGGAYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMRKVFGAPGGLGVMPSGPCARCDRPSPSIGEHPA
Ga0307281_100093073	3300028803	Soil	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFRTPGALKAMSDGPCARCKRPTPCLGEHPS
Ga0307305_100526922	3300028807	Soil	MTAVTYTTEDFVRRMVGQLLRGKYRGGGLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFSAPGALGSTPSGPCARCKRPNPCIGERPA
Ga0307296_104055892	3300028819	Soil	MTAVTYTTEDFVRRTVGRLLRGKYRGGGLCSWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALESTPSGPCARCKRPNPCIGERPA
Ga0307312_100331041	3300028828	Soil	EPSSDRSRGRADSRPAGSIGVTIPMTAVTYTTEDFVRRMVGQLLRGKYRGGRLCAWCLVGMTLERLHTGWRKSEIEHAMEKVFNAPGALGSTPSGPCARCKRPNPCIGERPA
(restricted) Ga0255311_10023484	3300031150	Sandy Soil	VRDGAAVVTYTTEEFVRRTVGRLLHGKYRGQVVCAPCLVGMTLERLHTGWRKSEIEHAMTGLFKTPGTLRWLPAGPCARCRRPNPSVGEPPS
(restricted) Ga0255311_10326471	3300031150	Sandy Soil	RSRHARAPGRVTGPETMVTYTTEEFVRRMVGRLLADKSRGRAVCASCLVGMTRERLHTGWRKSEIERAMEKVFAAPGSLDVLPAGPCARCKRRSPSIGDHPA
(restricted) Ga0255310_100093612	3300031197	Sandy Soil	MVTYTTEEFVRRMVGRLLADKSRGRAVCASCLVGMTRERLHTGWRKSEIERAMEKVFAAPGSLDVLPAGPCARCKRRSPSIGDHPA
(restricted) Ga0255310_100265062	3300031197	Sandy Soil	VRDGAAVVTYTTEEFVRRTVGRLLRGKYRGQVVCAPCLVGMTLERLHTGWRKSEIEHAMTGLFKTPGTLRWLPAGPCARCRRPNPSVGEPPS
(restricted) Ga0255312_10179523	3300031248	Sandy Soil	VRDGAAVVTYTTEEFVRRTVGRLLRGKYRGQVVCAPCLVGMTLERLHTGWRKSEIEHAMTGLFKTPGTLRCLPAGPCARCRRPNPSVGEPPS
Ga0307505_101784821	3300031455	Soil	RTIGRLLGGAYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMGKVFDTPGDLGVTPSGPCARCNRPSPSIGEHPA
Ga0307469_100913733	3300031720	Hardwood Forest Soil	MVTYTTEDFVRRMVGRLLGGRYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMGKVFDTPGDLGVTPSGPCARCNRPSPSIGERPA
Ga0307468_1000280381	3300031740	Hardwood Forest Soil	GWLLGGRYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMGKVFDTPGDLGVTPSGPCARCNRPSPSIGERPA
Ga0307470_100547183	3300032174	Hardwood Forest Soil	MTAATYSTEDFVRRTVGGLLRGRYRGAAVCSRCLVGMTLESLHAGWRKSEIEHAMEKVFSVPGALGRVSDGPCARCKRPEPCIGEPAS
Ga0307471_1040131542	3300032180	Hardwood Forest Soil	TEDFVRRMVGRLLGGRYRGRAVCASCLVGMTLERLHTGWRKSEIEQAMGKVFDTPGDLGVTPSGPCARCNRPSPSIGERPA
Ga0334722_101387622	3300033233	Sediment	VTVPVSTVTYTTEDFVRRTVGRMLRGRYQSGAVCSACLVGMTLERLHTGWRRSEIEQAMEKVFNDPGTLGRASSGPCARCKRSNPCIGAPAS
Ga0364928_0064404_332_592	3300033813	Sediment	MVTYTTEDFVRRAVGRLLHDKYHGGVVCSWCLVGMTLERLHTGWRKSEIEQAMEKVFKTPGALKPMSDGPCARCKRPTPCLGEHPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters