Metagenome / Metatranscriptome Family F089928

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089928
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	98 residues
Representative Sequence	MKKLAAVVCAVFVAALILGAVTPVLAAGKTHQVKATVVSVDLEGKKITIKDEKGEEKTAPVMDKAVDELKNIKAGDKVTLTCHDNDKGEHEGVTAIKKG
Number of Associated Samples	76
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.33 %
% of genes near scaffold ends (potentially truncated)	28.70 %
% of genes from short scaffolds (< 2000 bps)	75.00 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.407 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (36.111 % of family members)
Environment Ontology (ENVO)	Unclassified (41.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.222 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 11.02% β-sheet: 31.50% Coil/Unstructured: 57.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00282	Pyridoxal_deC	17.76
PF00583	Acetyltransf_1	7.48
PF00856	SET	5.61
PF08530	PepX_C	3.74
PF01979	Amidohydro_1	3.74
PF07969	Amidohydro_3	2.80
PF07228	SpoIIE	1.87
PF11799	IMS_C	1.87
PF11604	CusF_Ec	1.87
PF02203	TarH	0.93
PF03626	COX4_pro	0.93
PF01266	DAO	0.93
PF00498	FHA	0.93
PF02517	Rce1-like	0.93
PF00210	Ferritin	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	17.76
COG2936	Predicted acyl esterase	General function prediction only [R]	3.74
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.87
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	0.93
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.41 %
Unclassified	root	N/A	17.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.41 %
Unclassified	root	N/A	17.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.41 %
Unclassified	root	N/A	17.59 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	49.07 %
Unclassified	root	N/A	17.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.48 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.85 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.59 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.48 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.85 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.48 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.85 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.48 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.93 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.48 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.93 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002908\|JGI25382J43887_10346847	Not Available	631	Open in IMG/M
3300005172\|Ga0066683_10207620	All Organisms → cellular organisms → Bacteria → Proteobacteria	1210	Open in IMG/M
3300005174\|Ga0066680_10049439	All Organisms → cellular organisms → Bacteria → Acidobacteria	2465	Open in IMG/M
3300005180\|Ga0066685_10012302	All Organisms → cellular organisms → Bacteria → Acidobacteria	4855	Open in IMG/M
3300005180\|Ga0066685_10095802	All Organisms → cellular organisms → Bacteria → Proteobacteria	1976	Open in IMG/M
3300005186\|Ga0066676_10800551	Not Available	638	Open in IMG/M
3300005332\|Ga0066388_100175819	All Organisms → cellular organisms → Bacteria → Proteobacteria	2745	Open in IMG/M
3300005446\|Ga0066686_10287265	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300005446\|Ga0066686_10288792	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300005450\|Ga0066682_10057790	All Organisms → cellular organisms → Bacteria	2369	Open in IMG/M
3300005450\|Ga0066682_10063667	All Organisms → cellular organisms → Bacteria → Acidobacteria	2263	Open in IMG/M
3300005536\|Ga0070697_100001058	All Organisms → cellular organisms → Bacteria	20809	Open in IMG/M
3300005536\|Ga0070697_100127975	Not Available	2128	Open in IMG/M
3300005546\|Ga0070696_100361190	All Organisms → cellular organisms → Bacteria → Acidobacteria	1127	Open in IMG/M
3300005555\|Ga0066692_10115467	All Organisms → cellular organisms → Bacteria → Acidobacteria	1612	Open in IMG/M
3300005574\|Ga0066694_10032057	All Organisms → cellular organisms → Bacteria → Acidobacteria	2354	Open in IMG/M
3300005598\|Ga0066706_10488355	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300005713\|Ga0066905_100002073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7301	Open in IMG/M
3300005829\|Ga0074479_10166547	Not Available	512	Open in IMG/M
3300005836\|Ga0074470_11811670	All Organisms → cellular organisms → Bacteria	3695	Open in IMG/M
3300006046\|Ga0066652_100486456	All Organisms → cellular organisms → Bacteria → Acidobacteria	1143	Open in IMG/M
3300007255\|Ga0099791_10040843	All Organisms → cellular organisms → Bacteria → Acidobacteria	2059	Open in IMG/M
3300009012\|Ga0066710_100132158	All Organisms → cellular organisms → Bacteria	3428	Open in IMG/M
3300009012\|Ga0066710_100551680	All Organisms → cellular organisms → Bacteria → Proteobacteria	1743	Open in IMG/M
3300009012\|Ga0066710_100569770	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300009012\|Ga0066710_100942194	Not Available	1331	Open in IMG/M
3300009012\|Ga0066710_101217609	Not Available	1167	Open in IMG/M
3300009012\|Ga0066710_102260020	All Organisms → cellular organisms → Bacteria → Acidobacteria	792	Open in IMG/M
3300009012\|Ga0066710_104642417	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300009012\|Ga0066710_104910586	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300009038\|Ga0099829_11112866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300009088\|Ga0099830_11533356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300009089\|Ga0099828_10008949	All Organisms → cellular organisms → Bacteria	7356	Open in IMG/M
3300009089\|Ga0099828_11128772	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300009137\|Ga0066709_100311109	All Organisms → cellular organisms → Bacteria	2145	Open in IMG/M
3300009137\|Ga0066709_100863622	All Organisms → cellular organisms → Bacteria → Proteobacteria	1316	Open in IMG/M
3300009137\|Ga0066709_102935514	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300010047\|Ga0126382_11829397	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300010081\|Ga0127457_1015954	All Organisms → cellular organisms → Bacteria → Acidobacteria	711	Open in IMG/M
3300010087\|Ga0127492_1052709	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300010115\|Ga0127495_1131732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300010304\|Ga0134088_10662646	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	522	Open in IMG/M
3300010359\|Ga0126376_10043063	All Organisms → cellular organisms → Bacteria	3149	Open in IMG/M
3300010362\|Ga0126377_11155381	All Organisms → cellular organisms → Bacteria → Acidobacteria	844	Open in IMG/M
3300010400\|Ga0134122_11360712	Not Available	721	Open in IMG/M
3300012096\|Ga0137389_11717206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300012199\|Ga0137383_10344809	All Organisms → cellular organisms → Bacteria → Acidobacteria	1091	Open in IMG/M
3300012199\|Ga0137383_11201645	Not Available	545	Open in IMG/M
3300012201\|Ga0137365_10922753	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300012203\|Ga0137399_10133920	All Organisms → cellular organisms → Bacteria → Acidobacteria	1962	Open in IMG/M
3300012203\|Ga0137399_10357199	All Organisms → cellular organisms → Bacteria → Acidobacteria	1214	Open in IMG/M
3300012203\|Ga0137399_10910267	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300012203\|Ga0137399_11392022	Not Available	587	Open in IMG/M
3300012206\|Ga0137380_10000818	All Organisms → cellular organisms → Bacteria	23945	Open in IMG/M
3300012206\|Ga0137380_10047427	All Organisms → cellular organisms → Bacteria → Acidobacteria	3943	Open in IMG/M
3300012206\|Ga0137380_10165870	All Organisms → cellular organisms → Bacteria	2012	Open in IMG/M
3300012206\|Ga0137380_10232393	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300012207\|Ga0137381_10000389	All Organisms → cellular organisms → Bacteria	27298	Open in IMG/M
3300012207\|Ga0137381_10500608	All Organisms → cellular organisms → Bacteria → Acidobacteria	1060	Open in IMG/M
3300012209\|Ga0137379_10072558	All Organisms → cellular organisms → Bacteria	3310	Open in IMG/M
3300012211\|Ga0137377_10483988	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300012349\|Ga0137387_10185636	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1491	Open in IMG/M
3300012351\|Ga0137386_11254817	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300012355\|Ga0137369_10829532	Not Available	628	Open in IMG/M
3300012359\|Ga0137385_10707683	All Organisms → cellular organisms → Bacteria → Acidobacteria	841	Open in IMG/M
3300012360\|Ga0137375_11396798	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300012362\|Ga0137361_10413669	All Organisms → cellular organisms → Bacteria → Acidobacteria	1239	Open in IMG/M
3300012362\|Ga0137361_11734430	Not Available	544	Open in IMG/M
3300012396\|Ga0134057_1105086	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300012396\|Ga0134057_1105086	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300012685\|Ga0137397_10002218	All Organisms → cellular organisms → Bacteria	13620	Open in IMG/M
3300012918\|Ga0137396_11064428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300012922\|Ga0137394_10274728	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300012922\|Ga0137394_10409947	All Organisms → cellular organisms → Bacteria → Acidobacteria	1155	Open in IMG/M
3300012922\|Ga0137394_11065842	Not Available	670	Open in IMG/M
3300012944\|Ga0137410_10041487	All Organisms → cellular organisms → Bacteria	3251	Open in IMG/M
3300014154\|Ga0134075_10523708	Not Available	533	Open in IMG/M
3300015359\|Ga0134085_10257970	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	760	Open in IMG/M
3300015359\|Ga0134085_10514666	Not Available	548	Open in IMG/M
3300018059\|Ga0184615_10111468	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300018063\|Ga0184637_10397059	Not Available	822	Open in IMG/M
3300018077\|Ga0184633_10395305	Not Available	691	Open in IMG/M
3300018431\|Ga0066655_11254040	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300018468\|Ga0066662_10257618	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300020170\|Ga0179594_10175899	All Organisms → cellular organisms → Bacteria → Acidobacteria	798	Open in IMG/M
3300021090\|Ga0210377_10484730	Not Available	717	Open in IMG/M
3300025160\|Ga0209109_10147782	All Organisms → cellular organisms → Bacteria → Acidobacteria	1185	Open in IMG/M
3300025165\|Ga0209108_10132654	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300025324\|Ga0209640_10198525	All Organisms → cellular organisms → Bacteria → Acidobacteria	1705	Open in IMG/M
3300026296\|Ga0209235_1021331	All Organisms → cellular organisms → Bacteria	3457	Open in IMG/M
3300026296\|Ga0209235_1206805	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300026297\|Ga0209237_1258823	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300026324\|Ga0209470_1136873	Not Available	1081	Open in IMG/M
3300026327\|Ga0209266_1106492	Not Available	1215	Open in IMG/M
3300026328\|Ga0209802_1056354	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1918	Open in IMG/M
3300026329\|Ga0209375_1068605	All Organisms → cellular organisms → Bacteria	1688	Open in IMG/M
3300026329\|Ga0209375_1153547	All Organisms → cellular organisms → Bacteria → Acidobacteria	965	Open in IMG/M
3300026537\|Ga0209157_1140518	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300027655\|Ga0209388_1043326	All Organisms → cellular organisms → Bacteria → Acidobacteria	1297	Open in IMG/M
3300027862\|Ga0209701_10711815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300028536\|Ga0137415_10144740	All Organisms → cellular organisms → Bacteria → Acidobacteria	2215	Open in IMG/M
3300028536\|Ga0137415_10697605	All Organisms → cellular organisms → Bacteria → Acidobacteria	828	Open in IMG/M
3300031820\|Ga0307473_10020147	All Organisms → cellular organisms → Bacteria → Acidobacteria	2696	Open in IMG/M
3300032180\|Ga0307471_100006076	All Organisms → cellular organisms → Bacteria → Proteobacteria	7630	Open in IMG/M
3300032180\|Ga0307471_100117988	All Organisms → cellular organisms → Bacteria → Acidobacteria	2463	Open in IMG/M
3300032205\|Ga0307472_100203230	All Organisms → cellular organisms → Bacteria → Acidobacteria	1508	Open in IMG/M
3300032205\|Ga0307472_102665885	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300033813\|Ga0364928_0075087	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.44%
Aquatic	Environmental → Aquatic	5.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.52%
Sediment	Environmental → Aquatic → Sediment	4.63%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Floodplain	Environmental → Terrestrial → Floodplain	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.96%
Loam	Environmental → Terrestrial → Soil → Loam	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010081	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010087	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010115	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25382J43887_103468472	3300002908	Grasslands Soil	MKKVALLVCAVFVAGLVLGAAPPALAAGKTHDLTATVVSVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAPAKS*
Ga0066683_102076202	3300005172	Soil	MKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVVSVDLENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAAKS*
Ga0066680_100494392	3300005174	Soil	MRKVALLVCAVFVAGLIMAQAPTATAAGKTHDLKATVVSVDLEGKKITIKDEKGELKTAPVLAQAIESLKTVKAGDNVTVTCQDNEKGEHQGVAAIKINKA*
Ga0066685_100123022	3300005180	Soil	MRNLAAVICALFVAGLILGVVTPAIAAGKTHQVKATVVAIDTEHNQITIKDEKGEEKTAPVMDKAIEELKTLKAGDKVTLTCHDNDKGEHEGVTAIKKG*
Ga0066685_100958021	3300005180	Soil	MKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVISVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAAKS*
Ga0066676_108005511	3300005186	Soil	MKKLAAVVCAVFVAALILGVVSPALAAGKTHQVKATIVSVDMEGKTITIKDEKGEQKTAPVMDKAVDELKNIKAGDKVTLTCHDNDKGEH
Ga0066388_1001758192	3300005332	Tropical Forest Soil	MKRLAAVLCAVFVAALILSVASPAIAAGKTHQVKATVVSIDMEGKTITIKDEKGEEKTAPVMDKAVAELKTIKAGDKVTLTCHDNDKGEHEGVTAIKKG*
Ga0066686_102872652	3300005446	Soil	MKKLALWVCAVFVAGLVLSVASPALAAGKTHDVTATIVSIDVENKQLTFKDDKGEQKTAPVMGKAVDELKTIKAGDKVTLTCTDNDKGEHMGVSGIKAAQG*
Ga0066686_102887921	3300005446	Soil	MKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVISVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSA
Ga0066682_100577903	3300005450	Soil	MRKVASLVCALFVAGLVLAQLTPALAAAKTHQLTATIVSVDMEKKTITIKDDKGEEKTAPVLDKAVASLKSLHAGEKVNITCKDNDKGEHLGVTAIEAAKS*
Ga0066682_100636672	3300005450	Soil	MKKLAAVVCAVFVAALILGVVSPALAAGKTHQVKATIVSVDMEGKTITIKDEKGEQKTAPVMDKAVDELKNIKAGDKVTLTCHDNDKGEHEGITAIQKG*
Ga0070697_1000010584	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKKLALWVCAVFVAGLVLSVASPALAAGKTHDVTATVVSIDVEHKQLTFKDDKGEQKTAPVMGKAVDELKTIKAGDKVTLTCTDNDKGEHVGVSEIKAS*
Ga0070697_1001279752	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKKVALLVCAVFVAGLVLGAVTPVLAAGKTHDLTATVVSVDVENKKITFKDEKGEEKTAPVMGKAVDTLKSVHAGDKVNLTCTDNDKGEHVGVSAIAVAKS*
Ga0070696_1003611901	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRNLAAVLCALFVAGLILGVATPAIAAGKTHQMKATVVSIDTEHNQITIKDEKGEEKTAPVMDKAVEELKTLKAGDKVTLTCHDNEKGEHEGVTAIKKG*
Ga0066692_101154672	3300005555	Soil	MKKLTAVVCAVFVAALVLGVVSSALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTDIKKG*
Ga0066694_100320572	3300005574	Soil	MKKLAAVVCAVFVAALVLGVVSPALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTDIKKG*
Ga0066706_104883552	3300005598	Soil	MKKAALLICAVFVAGLVLGSVTPVLAAGKTHDLTATVVSVDVENKKITFKDEKGEEKTAPVMGKAVETLKTVHAGDKVNLTCTDNDKGEHLGVSGIAIAKS*
Ga0066905_1000020737	3300005713	Tropical Forest Soil	MRNLAAVVCALVVAGLILGVATPAMAAGKTHQVKATVVAVDAEHNQITIKDETGAEKTAPVMDKAIEELKTVKAGDHVTLTCKDNDKGEHEGVTSIKKG*
Ga0074479_101665472	3300005829	Sediment (Intertidal)	LVCAVFVMALVLAQVNLVSAAGKTHDLTATVVSIDMEKKTITIKDEKGEEKTAPVLDKAMASLKNVHTGDKVKITCQDTEKGDHEGVTAIKVEKA*
Ga0074470_118116705	3300005836	Sediment (Intertidal)	MRKMTALVCAVFVVVLALAQVSLVVAAGKTHDLTATVVSIDVEKKTITIKDDKGEEKTAPVLDKAMSSLKNVHAGDKVKITCQDTDKGEHEGVTAIKVEKA*
Ga0066652_1004864562	3300006046	Soil	MKKLAAVVCAVFVAALVLGVVSPALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTAPVMDKAVDELKNIKAGDKVTLTCHDNDKGEHEGITAIQKG*
Ga0099791_100408432	3300007255	Vadose Zone Soil	MRHLALVLGVLVVAGLILGVATPAMAGGKTHQMKATIVSIDTEHNQITIKDEKGEEKTAPVMDKAIEELKTLKAGDKVTLTCHDNEKGEHEGVTAIKKG*
Ga0066710_1001321581	3300009012	Grasslands Soil	MKKLALWVCAVFVAGLVLSVASPALAAGKTHDVTATIVSIDVENKQLTFKDDKGEQKTAPVMGKAVDELKTIKAGDKVTLTCTDNDKGEHMGVSGIKAAQG
Ga0066710_1005516802	3300009012	Grasslands Soil	MKKLALWVCAVFVAGLVLSVASPALAAGKTHDVTATVVSIDVEHKQLTFKDDKGEQKTAPVMGKAVDELKTIKAGDKVTLTCTDNDKGEHVGVSEIKAS
Ga0066710_1005697701	3300009012	Grasslands Soil	MRKVASLVCALFVAGLVLAQLTPALAAAKTHQLTATIVSVDMEKKTITIKDDKGEEKTAPVLDKAVGSLKSLHAGEKVNITCKDNDKGEHLGVTAIEAAKS
Ga0066710_1009421942	3300009012	Grasslands Soil	MKNLAAVVCAVFVAALILGVVSPALAAGKTHQVKATIVSIDTEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTC
Ga0066710_1012176093	3300009012	Grasslands Soil	MKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVISVDLENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAAKS
Ga0066710_1022600202	3300009012	Grasslands Soil	MKKLAAVVCAVFVAALVLGVVSPALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTDIKKG
Ga0066710_1046424172	3300009012	Grasslands Soil	GGNKKDVAAVVCAVFVDALNLGVVSPAHAAGKTHQVKATIVSIDTEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTEIKKG
Ga0066710_1049105861	3300009012	Grasslands Soil	GCSPGSRTEGSLHGDLYYDAGSGVQTLVLSGGTMKKLTAVVCAVFVAAMILGVVTPALAAGKTHQLKATIVSIDLEGKKITIKDEKGEEKTAPVMDKAVDELKNINAGYKVTLTCHDNDKGEHEGITAIQKG
Ga0099829_111128662	3300009038	Vadose Zone Soil	MRKLALLVAAAAVIGLVLAHPTPVSAAGKTHQMTATVVSIDLEGKKITIKDDKGEEKTAPVLGKAVASLKTLKAGDKVDITCQDNEKGEHQGVSAIKVEKS*
Ga0099830_115333562	3300009088	Vadose Zone Soil	MRKLALLVAAAAVIGLVLAHPTPVSAAGKTHQMTATVVSIDLEGKKITIKDDKGEEKTAPVLGKAVANLKTLKAGDKVDITCQDNEKGEHLGVSAI
Ga0099828_100089491	3300009089	Vadose Zone Soil	MRKLALLVAAAAVIGLVLAHPTPVSAAGKTHQMTATVVSIDLEGKKITIKDDKGEEKTAPVLGKAVANLKTLKAGDKVDITCQDNEKGEHLGVSAIKVEKS*
Ga0099828_111287722	3300009089	Vadose Zone Soil	VCAVFVAALVLGVVSSALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTDIKKG*
Ga0066709_1003111091	3300009137	Grasslands Soil	MKKLTAVVCAVFVAAMILGVVTPALAAGKTHQLKATIVSIDLEGKKITIKDEKGEEKTAPVMDKAVDEIKNFKAGDKVTLTCHDNDKGEHEGV
Ga0066709_1008636223	3300009137	Grasslands Soil	MKKVALLVCAVFIAGLVLVAATPALAAGKTHDLTATVVSVDLENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAAKS*
Ga0066709_1029355142	3300009137	Grasslands Soil	AAVICALFVAGLILGVVTPAIAAGKTHQVKATVVAIDTEHNQITIKDEKGEEKTAPVMDKAIEELKTLKAGDKVTLTCHDNDKGEHEGVTAIKKG*
Ga0126382_118293971	3300010047	Tropical Forest Soil	MRNLAAVVCALFVAGLILGVATPAMAAGKTHQVKATIVSIDAEHNQITITDETGAQKTAPVMDKAIEDLKTVKAGDKVTLTCKDNEKGEHEGVTAIKKG*
Ga0127457_10159541	3300010081	Grasslands Soil	MKNMALWVCMLFVASLVIGPVTHVLAAGKTHQTTAEVVSVDVEGKMLTIKDEKGETKTAPVLDKAVEKLKTLKAGDKVTLTCKDNDKGEHEGITDITVAKVTS*
Ga0127492_10527091	3300010087	Grasslands Soil	HKGGAMKKLALWVCAVFVAGLVLSVASPALAAGKTHDVTATIVSIDVENKQLTFKDDKGEQKTAPVMGKAVDELKTIKAGDKVTLTCTDNDKGEHMGVSGIKAAQG*
Ga0127495_11317321	3300010115	Grasslands Soil	PLVSCGGTMKKLATVVCAVFVAALILGVVNPALAAGKTHQVKATVVSIDMEGKTITIKDEKGEEKTAPVMDKAVEELKTIKAGDKVTLTCHDNDKGEHEGVTAIKKG*
Ga0134088_106626461	3300010304	Grasslands Soil	GGAMKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVISVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAAKS*
Ga0126376_100430632	3300010359	Tropical Forest Soil	MKRLAVVLCAVFVAALVLSVVSPAIAAGKTHQVKATVVSIDMEGKTITIKDEKGEEKTAPVMDKAVAELKTIKAGDKVTLTCHDNDKGEHEGVTAIKKG*
Ga0126377_111553811	3300010362	Tropical Forest Soil	MRNLAAVVCALFVAGLILGVATPAMAAGKTHQVKATVVSVDAEHNQITITDETGAQKTAPVIDKAIEDLKTVKAGDHVTLTCKDNEKGEHEGVTAIKKG*
Ga0134122_113607121	3300010400	Terrestrial Soil	MRNLAAVFCALFVAGLILGVATPAMAAGKTHQVKATIVSIDAEHNQITITDETGAQKTAPVMDKAIEDLKTVKAGDKVTLTCKDNDKGEHEGVTAIKKG*
Ga0137389_117172061	3300012096	Vadose Zone Soil	MKKLALLVAAAAVIGLVLAHPTPVSAAGKTHQMTATVVSIDLEGKKITIKDDKGEEKTAPVLGKAVANLKTLKAGDKVDITCQDNEKGEHLGVSAIKVEKS*
Ga0137383_103448091	3300012199	Vadose Zone Soil	MKKVALLICAVFVAGLVLGAVTPVLAAGKTHDLTATIVSVDTENKKLTFKDEKGEEKTAPVMGKAIDDLKTIHAGDKVTLTCTDSDKGEHLGISAIKAAKV*
Ga0137383_112016452	3300012199	Vadose Zone Soil	MKKVALLVCTMFVAALVLGAVTPVLAAGKTHDMTATVVSVDVENKKITFKDEKGEEKTAPVMGKAVDTLKTVHAGDKVNLTCTDNDK
Ga0137365_109227531	3300012201	Vadose Zone Soil	AVMCALFVAGLILGVASPAVAAGKTHQVKATVVAVDLEHNQLTITDEKGEQKTAPVMDKAVEDLKTLKAGDKVTLTCQDNEKGEHEGVTAIKKG*
Ga0137399_101339202	3300012203	Vadose Zone Soil	MRHLALVLGVLVVAGLILGVATPAMAGGKTHQMKATIVSIDAEHNQITIKDEKGEEKTAPVMDKAIEEIKTLKAGDKVTLTCHDNEKGEHEGVTAIKKG*
Ga0137399_103571992	3300012203	Vadose Zone Soil	MVCAVFVAGVVMSAMTPALAAGKTHDMTATVVSVDVQKKQITIKDEKGEEKTAPVMGKAIASLKTIKAGDKVTVTCTDNDKGEHLGVSAIKVDKS*
Ga0137399_109102671	3300012203	Vadose Zone Soil	MKKLAAVVCAVFVAALILGAVTPVLAAGKTHQVKATVVSVDLEGKKITIKDEKGEEKTAPVMDKAVDELKNIKAGDKVTLTCHDNDKGEHEGVTAIKKG*
Ga0137399_113920221	3300012203	Vadose Zone Soil	MRKVASLVCALFVAGLVLAQLTPALAAGKTHQLTATIVSVDMEKKTITIKDDKGEEKTAPVLDKAVASLKNIHAGEKVNITCKDNDKGEHM
Ga0137380_1000081810	3300012206	Vadose Zone Soil	MKKLALLVAAAAVIGLVLAHPTPVSAAGKTHQMTATVVSIDLEGKKITIKDDKGEEKTAPVLGKAVASLKTLKAGDKVDITCQDNEKGEHQGVSAIKVEKS*
Ga0137380_100474274	3300012206	Vadose Zone Soil	AVVCAVFVAALVLGVVSPALAAGKTHQVKATIVSIDTEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTDIKKG*
Ga0137380_101658701	3300012206	Vadose Zone Soil	MKKVALLVCAMFVAALVLGAVTPVLAAGKTHDLTATVVSVDVENKKITFKDEKGEEKTAPVMGKAVDTLKTVHAGDKVNLTCTDNDKGEHLGVSAIAVAKS*
Ga0137380_102323932	3300012206	Vadose Zone Soil	MKKVALLICAVFVAGLVLGAVTPVLAAGKTHDLTATVVSVDTENKKLTFKDEKGEEKSAPVMGKAIDDLKTIHAGDKVTLTCTDSDKGEHLGISAIKVAKV*
Ga0137381_1000038914	3300012207	Vadose Zone Soil	MKKLAAVVCAVFVAALVLGVVSPALAAGKTHQVKATIVSIDTEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTDIKKG*
Ga0137381_105006082	3300012207	Vadose Zone Soil	MKRLAAVVCAVFVAALILGVVSPALAAGKTHQMKATIVSIDTEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTEIKKG*
Ga0137379_100725584	3300012209	Vadose Zone Soil	MKKVALLICAVFVAGLVLGAVTPVLAAGKTHDLTATVVSVDTENKKLTFKDEKGEEKSAPVMGKAIDDLKTIHAGDKVTLTCTDNDKGEHLGISAIKAAKV*
Ga0137377_104839882	3300012211	Vadose Zone Soil	MKKVALLVCTMFVAALVLGAVTPVLAAGKTHDLTATVVSVDVENKKITFKDEKGEEKTAPVMGKAVDTLKTVHAGDKVTLTCTDSDKGEHLGISAIKAAKV*
Ga0137387_101856362	3300012349	Vadose Zone Soil	MKKLALLVAAAAVIGLVLAHPTPVSAAGKTHQMTATVVSIDLEGKKITIKDDKGEEKTAPVLGKAVASLKTLKAGDKVDITCQDNEKGEHQGVSAI
Ga0137386_112548171	3300012351	Vadose Zone Soil	MKNLAAVVCAVFVAALILGVASPALAAGKTHQMKATIVSVDVEGKTITIKDEKGEEKTAPVMDKAVDELKNIKAGDKVTLTCHDNDKGEHEGVTAIKKG*
Ga0137369_108295322	3300012355	Vadose Zone Soil	MRNLAAVLCALFVAGLILGVATPAMAAGKTHQVKATIVSIDAEHNQITIKDETGAEKTAPVMDKAIEDLKTVKAGDKVTLT*
Ga0137385_107076831	3300012359	Vadose Zone Soil	MKKLAAVVCAVFVAALILGVVSPALAAGKTHQMKATIVSIDTEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTEIKKG*
Ga0137375_113967982	3300012360	Vadose Zone Soil	MCALFVAGLILGVASPAVAAGKTHQVKATVVSVDIEHNQITITDEKGEQKTAPVMDKAVEELKTVKAGDKVTLTCQDNEKGEHEGVTAIKKG*
Ga0137361_104136691	3300012362	Vadose Zone Soil	MKKLAAVVCAVFVAALVLGVVSSALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGHKVTLTCHDNEKGEHEGVTDIKKG*
Ga0137361_117344301	3300012362	Vadose Zone Soil	MRKVASLVCALFVAGLVLAQLTPALAAGKTHQLTATIVSLDMEKKTITIKDDKGEEKTAPVLDKAIASLKNFHAGEKVNITCKDNDKGEHEGVT
Ga0134057_11050861	3300012396	Grasslands Soil	PLVSCGGTMKKLAAVVCAVFVAALILGVVSPALAAGKTHQVKATIVSVDMEGKTITIKDEKGEQKTAPVMDKAVDELKNIKAGDKVTLTCHDNDKGEHEGITAIHKG*
Ga0134057_11050862	3300012396	Grasslands Soil	AVFVAALILGVVNPALAAGKTHQVKATVVSIDMEGKTITIKDEKGEEKTAPVMDKAVEELKTIKAGDKVTLTCHDNDKGEREGVTAIKKG*
Ga0137397_100022181	3300012685	Vadose Zone Soil	MKKLAAVVCAVFVAALVLGVVSPALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHE
Ga0137396_110644281	3300012918	Vadose Zone Soil	MRKVASLVCALFVAGLVLAQLTPALAAGKTHQLTATIVSVDMEKKTITIKDDKGEEKTAPVLDKAVASLKNIHAGEKVNLTCKDNDKGEHMGVTAIEAAKS*
Ga0137394_102747282	3300012922	Vadose Zone Soil	MKKVAALVCFVFLAGLALGVAPILAAAKTHQVKAEVVSIDLESNSLTIKDEKGETKTAPVLEKAVPTLKTLKAGDHVTVTCQDDDKGEHQGVSAIKIEKKA*
Ga0137394_104099472	3300012922	Vadose Zone Soil	MKKIAAVVCAVFVAALILGVASPAIAAGKTHQVKATVVSIDTEGKTITIKDEKGEEKTAPVMDKAVAELKNIKAGDKVTLTCHDNEKGEHEGVTAIKKG*
Ga0137394_110658422	3300012922	Vadose Zone Soil	MRKVASLVCALFVAGLVLAQLTPALAAGKTHQLTATIVSVDMEKKTITIKDDKGEEKTAPVLDKAVASLKNIHAGEKVNITCKDNDKGEHMGVTAIEAAKS*
Ga0137410_100414872	3300012944	Vadose Zone Soil	MKKLAAVVCAVFVAALVLGVVSPALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTTPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTDIKKG*
Ga0134075_105237082	3300014154	Grasslands Soil	VLVAATPALAAGKTHDLTATVISVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAAKS*
Ga0134085_102579702	3300015359	Grasslands Soil	MKKVALLVCTVFVAGLVLGAATPALAAGKTHDLTATVVSVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDRVNLTCTDNDKGEHLGVSAIAAAKS*
Ga0134085_105146662	3300015359	Grasslands Soil	MRNLAAVICALFVAGLILGVVTPAIAAGKTHQVKATVVAIDTEHNQITIKDEKGEEKTAPVMDKAIEELKTLKAGDKVTLTCHDNDKGEHE
Ga0184615_101114682	3300018059	Groundwater Sediment	MKKLVLLVCAAFVAGAIVAQFTPVLAAAKTHEMKATVVSVNLEGKMITIKDEAGEEKTAPVIGKAVSKLKAVHAGDKVTLTCQDKENGEHEGVSAIKVEKS
Ga0184637_103970591	3300018063	Groundwater Sediment	MRKMTALVSAVFVVALVLAQVNLVSAAGKTHDLTATVVSIDVEKKTITIKDEKGEEKTAPVLDQAVASLKSVHTGDKVKITCQDTDKGDHEGVSAIKVEKA
Ga0184633_103953051	3300018077	Groundwater Sediment	MRKMTALVCAVFVVALVLAQVNLVSAAGKTHDLTATVVSINVEKKTITIKDEKGEEKTAPVLDQAMASLKNVHTGDKVKITCQDTDKGDHEGVSAIKVEKA
Ga0066655_112540402	3300018431	Grasslands Soil	APAIAAGKPHEVKATVVAKEPEDNQITIKDEKGEEKTAPVMDKAIEELKTLKAGDKVTLTCHDNDKGEHEGVTAIKKG
Ga0066662_102576182	3300018468	Grasslands Soil	MKKAAVLVCAVFVASLILGAVTPVLAAGKTHDMTATVVSVDVENKKITIKDEKGEEKTAPVMGKAVDSLKTIHAGDKVTLTCTDNDKGEHVGVSAIKIAKG
Ga0179594_101758992	3300020170	Vadose Zone Soil	MKKLAAVVCAVFVAALVLGVVSPALAAGKTHQVKATVVSIDMEGKTITIKDEKGEQKTAPVMDKAVDELKNFKAGDKVTLTCHDNEKGEHEGVTAIKKG
Ga0210377_104847301	3300021090	Groundwater Sediment	QVNLVSAAGKTHDLTATVVSIDIEKKTITIKDEKGEEKTAPVLDKAMASLKNVHTGDKVKITCQDTDKGDHEGVSAIKVEKA
Ga0209109_101477822	3300025160	Soil	MRKHALLICAVFVALAILAQVTPALAGAKTHEMKATVVSVNLEGKMITIKDEKGEEKTAPVIGKAVAELKTVHAGDNVTLTCQDKENGEHEGVSAIKVEKA
Ga0209108_101326541	3300025165	Soil	MRKLGLLVCAVFVAVAILAQVTPALAGGKTHEMKATVVSVNLEGKMITIKDEKGEEKTAPVIGKAVAELKTVHAGDNVTLTCQDKENGEHEGVSAIKVEKA
Ga0209640_101985252	3300025324	Soil	MKKLVLLVCAAFVAGAILAQFTPVLAAAKTHEMKATVVSVNLEGKMITIKDEAGEEKTAPVIGKAVSKLKTVHAGDKVTLTCQDMENGEHEGVSAIKVEKS
Ga0209235_10213313	3300026296	Grasslands Soil	MKKVALLVCAVFVAGLVLGAAPPALAAGKTHDLTATVVSVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAPAKS
Ga0209235_12068051	3300026296	Grasslands Soil	MRNLAAVICALFVAGLILGVVTPAIAAGKTHQVKATVVAIDTEHNQITIKDEKGEEKTAPVMDKAIEELKTLKAGDKVTLTCHDNDKGEHEGVTAIKKG
Ga0209237_12588232	3300026297	Grasslands Soil	VMCALFVAGLILGVVTPAIAAGKTHQVKATIVAIDTEHNQITIKDEKGEEKTAPVMDKAIEELKTLKAGDKVTLTCHDNDKGEHEGVTAIKKG
Ga0209470_11368733	3300026324	Soil	MKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVISVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAAKS
Ga0209266_11064921	3300026327	Soil	MKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVVSVDLENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAAKS
Ga0209802_10563542	3300026328	Soil	MRKVALLVCAVFVAGLIMAQAPTATAAGKTHDLKATVVSVDLEGKKITIKDEKGELKTAPVLAQAIESLKTVKAGDNVTVTCQDNEKGEHQGVAAIKINKA
Ga0209375_10686051	3300026329	Soil	MKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVVSVDLENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKGEHLGVSAIAAA
Ga0209375_11535472	3300026329	Soil	MKKLAAVVCAVFVAALILGVVSPALAAGKTHQVKATIVSVDMEGKTITIKDEKGEQKTAPVMDKAVDELKNIKAGDKVTLTCHDNDKGEHEGITAIQKG
Ga0209157_11405182	3300026537	Soil	MKKVALLVCAVFVAGLVLVAATPALAAGKTHDLTATVISVDVENKKITFKDEKGEEKTAPVMGKAVDSLKTVHAGDKVNLTCTDNDKG
Ga0209388_10433262	3300027655	Vadose Zone Soil	MRHLALVLGVLVVAGLILGVATPAMAGGKTHQMKATIVSIDTEHNQITIKDEKGEEKTAPVMDKAIEELKTLKAGDKVTLTCHDNEKGEHEGVTAIKKG
Ga0209701_107118151	3300027862	Vadose Zone Soil	MRKLALLVAAAAVIGLVLAHPTPVSAAGKTHQMTATVVSIDLEGKKITIKDDKGEEKTAPVLGKAVANLKTLKAGDKVDITCQDNEKGEHLGVSAIKVEKS
Ga0137415_101447402	3300028536	Vadose Zone Soil	MRHLALVLGVLVVAGLILGVATPAMAGGKTHQMKATIVSIDAEHNQITIKDEKGEEKTAPVMDKAIEEIKTLKAGDKVTLTCHDNEKGEHEGVTAIKKG
Ga0137415_106976051	3300028536	Vadose Zone Soil	MRKLALMVCAVFVAGVVMSAMTPALAAGKTHDMTATVVSVDVQKKQITIKDEKGEEKTAPVMGKAIASLKTIKAGDKVTVTCTDNDKGEHLGVSAIKVDKS
Ga0307473_100201472	3300031820	Hardwood Forest Soil	MRNLAAMVCALVVAGLILGVATPAMAAGKTHQVKATVVAVDVEHNQITIKDESGAEKTAPVMDKAIEELKTVKAGDHVTLTCKDNDKGEHEGVTAIKKG
Ga0307471_1000060764	3300032180	Hardwood Forest Soil	MRKVALLVCAVFVAGLIMAQARTAMAAGKTHDLKATVVSVDLEGKKITLKDEKGELKTAPVLAQAIESLKTVKAGDNVTVTCQDNEKGEHQGVAAIKINKA
Ga0307471_1001179882	3300032180	Hardwood Forest Soil	MRHLALVFGVLVVAGLILGVTTPAMAGGKTHQMKATIVSIDAEHNQITIKDEKGEEKTAPVMDKAIEEIKTLKAGDKVTLTCHDNEKGEHEGVTAIKKG
Ga0307472_1002032301	3300032205	Hardwood Forest Soil	LAAVVCALVVAGLILGVATPAMAAGKTHQVKATVVSVDTEHNQITIKDESGAEKTAPVMDKAIEELKTVKAGDHVTLTCKDNDKGEHEGVTAIKKG
Ga0307472_1026658852	3300032205	Hardwood Forest Soil	MRKVALLVCTLAVAGLILAHVHPVTAAAKTHNLTATVVSVDLDGKKITVKDEKGETKTAPVLTEAIESLKTVKAGDRVTLTCKDNDKGEHEGVTAIKIEKA
Ga0364928_0075087_458_763	3300033813	Sediment	MKKLVLFVCAAFVAGAILAQVTPVLAAAKTHEMKATVVSVNLEEKMITIKDEAGEEKTAPVIGKAVSKLKAVHAGDKVTLTCQDKENGEHEGVSAIKVEKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089928

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences