Metagenome / Metatranscriptome Family F089906

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089906
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	75 residues
Representative Sequence	MSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRAPPPSPPGPLSA
Number of Associated Samples	87
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	16.67 %
% of genes near scaffold ends (potentially truncated)	29.63 %
% of genes from short scaffolds (< 2000 bps)	93.52 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.630 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (21.296 % of family members)
Environment Ontology (ENVO)	Unclassified (30.556 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.22% β-sheet: 0.00% Coil/Unstructured: 40.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF05532	CsbD	11.11
PF01680	SOR_SNZ	4.63
PF01894	UPF0047	2.78
PF02075	RuvC	1.85
PF12893	Lumazine_bd_2	1.85
PF02656	DUF202	0.93
PF05690	ThiG	0.93
PF07676	PD40	0.93
PF11258	DUF3048	0.93
PF08352	oligo_HPY	0.93
PF01174	SNO	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	11.11
COG0214	Pyridoxal 5'-phosphate synthase subunit PdxS	Coenzyme transport and metabolism [H]	5.56
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	2.78
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	1.85
COG0118	Imidazoleglycerol phosphate synthase glutamine amidotransferase subunit HisH	Amino acid transport and metabolism [E]	0.93
COG0311	Pyridoxal 5'-phosphate synthase subunit PdxT (glutamine amidotransferase)	Coenzyme transport and metabolism [H]	0.93
COG2022	Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis)	Coenzyme transport and metabolism [H]	0.93
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.93
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
All Organisms	root	All Organisms	45.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
cellular organisms	root	All Organisms → cellular organisms	45.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	32.41 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.85 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	32.41 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.85 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.93 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	32.41 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	32.41 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.63 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	32.41 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908043\|A2_c1_ConsensusfromContig67388	Not Available	1167	Open in IMG/M
2170459015\|G14TP7Y01DLRES	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	641	Open in IMG/M
3300000956\|JGI10216J12902_107311522	Not Available	1662	Open in IMG/M
3300002568\|C688J35102_118494065	Not Available	565	Open in IMG/M
3300004070\|Ga0055488_10133569	Not Available	632	Open in IMG/M
3300004778\|Ga0062383_10357599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	712	Open in IMG/M
3300005329\|Ga0070683_100854612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	873	Open in IMG/M
3300005331\|Ga0070670_100703986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	908	Open in IMG/M
3300005338\|Ga0068868_100526500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1038	Open in IMG/M
3300005344\|Ga0070661_101276069	Not Available	616	Open in IMG/M
3300005347\|Ga0070668_100929106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	779	Open in IMG/M
3300005355\|Ga0070671_100570933	Not Available	976	Open in IMG/M
3300005455\|Ga0070663_101766665	Not Available	554	Open in IMG/M
3300005456\|Ga0070678_100150446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1874	Open in IMG/M
3300005456\|Ga0070678_102064801	Not Available	540	Open in IMG/M
3300005466\|Ga0070685_10952438	Not Available	642	Open in IMG/M
3300005535\|Ga0070684_100429479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1220	Open in IMG/M
3300005543\|Ga0070672_100484405	Not Available	1068	Open in IMG/M
3300005548\|Ga0070665_100736072	Not Available	999	Open in IMG/M
3300005564\|Ga0070664_100869212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	845	Open in IMG/M
3300005616\|Ga0068852_102715226	Not Available	514	Open in IMG/M
3300005719\|Ga0068861_102132159	Not Available	561	Open in IMG/M
3300005833\|Ga0074472_10718805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	2078	Open in IMG/M
3300006046\|Ga0066652_101794286	Not Available	555	Open in IMG/M
3300006059\|Ga0075017_100022317	All Organisms → cellular organisms → Bacteria	4119	Open in IMG/M
3300006059\|Ga0075017_101268726	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300007521\|Ga0105044_10585868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	939	Open in IMG/M
3300009148\|Ga0105243_11804539	Not Available	643	Open in IMG/M
3300009176\|Ga0105242_12798329	Not Available	538	Open in IMG/M
3300009177\|Ga0105248_11896258	Not Available	676	Open in IMG/M
3300010399\|Ga0134127_13348563	Not Available	524	Open in IMG/M
3300012212\|Ga0150985_117606326	Not Available	1068	Open in IMG/M
3300012469\|Ga0150984_109722832	Not Available	590	Open in IMG/M
3300012492\|Ga0157335_1037277	Not Available	535	Open in IMG/M
3300012515\|Ga0157338_1045361	Not Available	613	Open in IMG/M
3300012906\|Ga0157295_10029886	Not Available	1168	Open in IMG/M
3300012906\|Ga0157295_10379701	Not Available	521	Open in IMG/M
3300012955\|Ga0164298_10312331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	979	Open in IMG/M
3300012986\|Ga0164304_10544222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	856	Open in IMG/M
3300012987\|Ga0164307_10199257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1362	Open in IMG/M
3300013296\|Ga0157374_11051702	Not Available	834	Open in IMG/M
3300013308\|Ga0157375_12117406	Not Available	669	Open in IMG/M
3300014969\|Ga0157376_10398218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1330	Open in IMG/M
3300015163\|Ga0167665_1020696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1307	Open in IMG/M
3300015189\|Ga0167667_1040613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1151	Open in IMG/M
3300015360\|Ga0163144_10325151	Not Available	1925	Open in IMG/M
3300015371\|Ga0132258_12571475	Not Available	1272	Open in IMG/M
3300015373\|Ga0132257_100508080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1479	Open in IMG/M
3300017965\|Ga0190266_10936394	Not Available	573	Open in IMG/M
3300018031\|Ga0184634_10455867	Not Available	576	Open in IMG/M
3300018073\|Ga0184624_10538625	Not Available	505	Open in IMG/M
3300018476\|Ga0190274_11304151	Not Available	813	Open in IMG/M
3300018476\|Ga0190274_12255236	Not Available	641	Open in IMG/M
3300018481\|Ga0190271_10034722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	4120	Open in IMG/M
3300020057\|Ga0163151_10174534	Not Available	1290	Open in IMG/M
3300021470\|Ga0194051_1113707	Not Available	930	Open in IMG/M
3300025899\|Ga0207642_10505675	Not Available	740	Open in IMG/M
3300025931\|Ga0207644_10747628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	817	Open in IMG/M
3300025934\|Ga0207686_10788847	Not Available	761	Open in IMG/M
3300025940\|Ga0207691_10793925	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300025953\|Ga0210068_1053532	Not Available	623	Open in IMG/M
3300026067\|Ga0207678_10986199	Not Available	746	Open in IMG/M
3300026088\|Ga0207641_11441512	Not Available	690	Open in IMG/M
3300026121\|Ga0207683_10169640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1976	Open in IMG/M
3300026121\|Ga0207683_11571978	Not Available	607	Open in IMG/M
3300027843\|Ga0209798_10108662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1409	Open in IMG/M
3300027843\|Ga0209798_10305514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	761	Open in IMG/M
3300027850\|Ga0209591_10407675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	939	Open in IMG/M
3300027897\|Ga0209254_10032128	All Organisms → cellular organisms → Bacteria	4697	Open in IMG/M
3300028712\|Ga0307285_10097207	Not Available	776	Open in IMG/M
3300028733\|Ga0302261_1069255	Not Available	829	Open in IMG/M
3300028743\|Ga0302262_10268711	Not Available	579	Open in IMG/M
3300028754\|Ga0307297_10133042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	839	Open in IMG/M
3300028802\|Ga0307503_10773257	Not Available	546	Open in IMG/M
3300028869\|Ga0302263_10038006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1893	Open in IMG/M
3300030019\|Ga0311348_10427840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	989	Open in IMG/M
3300031091\|Ga0308201_10419021	Not Available	507	Open in IMG/M
3300031226\|Ga0307497_10210413	Not Available	848	Open in IMG/M
3300031232\|Ga0302323_101565736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	743	Open in IMG/M
3300031366\|Ga0307506_10169150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	781	Open in IMG/M
3300031722\|Ga0311351_10210373	Not Available	1474	Open in IMG/M
3300031726\|Ga0302321_100615582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1211	Open in IMG/M
3300031726\|Ga0302321_100997462	Not Available	953	Open in IMG/M
3300031834\|Ga0315290_10332066	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300031834\|Ga0315290_10400327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1203	Open in IMG/M
3300031834\|Ga0315290_10898781	Not Available	752	Open in IMG/M
3300031902\|Ga0302322_100233216	Not Available	2031	Open in IMG/M
3300031902\|Ga0302322_101248286	Not Available	902	Open in IMG/M
3300031997\|Ga0315278_10175480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2198	Open in IMG/M
3300031997\|Ga0315278_10360477	Not Available	1502	Open in IMG/M
3300031997\|Ga0315278_10737510	Not Available	999	Open in IMG/M
3300032143\|Ga0315292_10715854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	841	Open in IMG/M
3300032143\|Ga0315292_11102394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	656	Open in IMG/M
3300032164\|Ga0315283_10457106	Not Available	1388	Open in IMG/M
3300032164\|Ga0315283_10520105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1292	Open in IMG/M
3300032164\|Ga0315283_11001052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	884	Open in IMG/M
3300032173\|Ga0315268_10656506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1044	Open in IMG/M
3300032177\|Ga0315276_10578287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1207	Open in IMG/M
3300032177\|Ga0315276_10945219	Not Available	918	Open in IMG/M
3300032177\|Ga0315276_12420227	Not Available	527	Open in IMG/M
3300032256\|Ga0315271_10311426	Not Available	1297	Open in IMG/M
3300032397\|Ga0315287_10497505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1447	Open in IMG/M
3300032397\|Ga0315287_10950177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1003	Open in IMG/M
3300032397\|Ga0315287_11845374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	671	Open in IMG/M
3300032401\|Ga0315275_11664994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	681	Open in IMG/M
3300032516\|Ga0315273_10018933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9029	Open in IMG/M
3300032516\|Ga0315273_10606947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1451	Open in IMG/M
3300032516\|Ga0315273_12440829	Not Available	605	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.52%
Host-Associated	Host-Associated	30.56%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	36.11%
Terrestrial	Environmental → Terrestrial	32.41%
Plants	Host-Associated → Plants	30.56%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	29.63%
Soil	Environmental → Terrestrial → Soil	23.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.96%
Peat	Environmental → Terrestrial → Peat	9.26%
Sediment	Environmental → Aquatic → Sediment	4.63%
Marine	Environmental → Aquatic → Marine	1.85%
Grass	Engineered → Solid Waste → Grass	0.93%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	24.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	19.44%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.11%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.63%
Loam	Environmental → Terrestrial → Soil → Loam	3.70%
Soil	Host-Associated → Plants → Rhizoplane → Soil	3.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.78%
Ice	Environmental → Aquatic → Freshwater → Ice	1.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.85%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	21.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.11%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.78%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	1.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	21.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	9.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	3.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.70%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	1.85%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	1.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.93%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.93%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300007521	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015163	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1b, glacier snout)	Environmental	Open in IMG/M
3300015189	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb2a, glacial moraine)	Environmental	Open in IMG/M
3300015360	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020057	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2	Environmental	Open in IMG/M
3300021470	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L239-20m	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025953	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027850	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028733	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_4	Environmental	Open in IMG/M
3300028743	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028869	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_4	Environmental	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031722	II_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_c1_00427180	2124908043	Soil	MGDSIDDRLLERWTTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTISDLEGTLRDRAVRRLPPPSAPGPLSA
4PV_00178760	2170459015	Switchgrass, Maize And Mischanthus Litter	MSAIIDDRLLERWQTSRRHQDEARRFLARQRISDPRGARRALEELVGTIADLEQTLRERAARR
JGI10216J12902_1073115222	3300000956	Soil	MSEQVDTRLLERWQTSCRHQDEARRFLARQRFSDPRGEREALDEIVGTLADLEQTLRERAVRSIPPSAPGPPPA*
C688J35102_1184940652	3300002568	Soil	LLERWQTSCRHQDEARRFLARQRFTNPQGDGRALEEIAGTIADMERILRQRAVRPTPQLDPPEDNPSSTRP*
Ga0055488_101335691	3300004070	Natural And Restored Wetlands	MSTSVDDRLLERWQTSQRHQGEARRFLARQRCSDPRHEGRELDEIVGTIADLERTLNERATAKHGPNPPAVPGPADIA*
Ga0062383_103575991	3300004778	Wetland Sediment	MSATIDERLLERWQTSRRHQAEARRFLARQRFSDPRGERRALEDIVGTIADLEQTLRDRATRRRPAPPPPGPQSA*
Ga0070683_1008546121	3300005329	Corn Rhizosphere	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRRPLR
Ga0070670_1007039862	3300005331	Switchgrass Rhizosphere	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLELTLRERAARRSTRPTQTGPRSA*
Ga0068868_1005265001	3300005338	Miscanthus Rhizosphere	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRLTRPTQTGPRS
Ga0070661_1012760692	3300005344	Corn Rhizosphere	MSATIDDRLLEQWKESRRHQDEARRFLARQKFSDPRGESRALEEIVGTIADLEQTLRQRAGRRSTRSTPPT
Ga0070668_1009291061	3300005347	Switchgrass Rhizosphere	MSTNVDDRLLERWRTSCRHQDEARRFLARRRFADARGEVQALEEIAGTIAEMERALKERAATPRPSHAPRPS*
Ga0070671_1005709332	3300005355	Switchgrass Rhizosphere	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRSTRPTQTGPRSA*
Ga0070663_1017666652	3300005455	Corn Rhizosphere	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRRPLRPTPPGPRIA*
Ga0070678_1001504462	3300005456	Miscanthus Rhizosphere	MSGTIDDRLLERWEVSRRHQDEARRFLARQKLSDPRGERRALEEIVGTIADLEQTLRDRANRRRPVRPAPSGPRPA*
Ga0070678_1020648011	3300005456	Miscanthus Rhizosphere	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRHAARPVPPGPQTA*
Ga0070685_109524381	3300005466	Switchgrass Rhizosphere	MSAIIDDRLLERWQTSRRHQDEARRFLARQRISDPRGERRALEEIVGTIADLEQTLRERAARRQPISPPPASGPMPA*
Ga0070684_1004294792	3300005535	Corn Rhizosphere	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRSTHPRQPGPRSA*
Ga0070672_1004844052	3300005543	Miscanthus Rhizosphere	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRRPVRPGPPGPRTA*
Ga0070665_1007360722	3300005548	Switchgrass Rhizosphere	MSATIDDRLLERWEVSRRHQDEARRFLARQKLSDPRGEARALDEIVGTIADLEQTLRQRASRRRTRPVGPSSA*
Ga0070664_1008692121	3300005564	Corn Rhizosphere	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLADPRGESRALEEIVGTIADLEQTLQARASRRRPSRPGSPGPRTG*
Ga0068852_1027152261	3300005616	Corn Rhizosphere	WQTSRRHQEEARRFLARQKLADPRGESRALEEIVCTIADLEQTLKARASRRRPVRQTPPGPRTG*
Ga0068861_1021321591	3300005719	Switchgrass Rhizosphere	MSATIDDRLLEHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASR
Ga0074472_107188054	3300005833	Sediment (Intertidal)	MSATIDDRLLERWQTSRRHQAEARRFLARQRFSDPRGERHALNEIVGTIADLEQTLHKRAARRTPAPPSPGPLSA*
Ga0066652_1017942861	3300006046	Soil	VSAIIDERLLERWQTSRRHQDEARRFLARQRFSDPRSEPQALAEIVGTIADMEQTLRDRAARRRPLEASPPRPHPA*
Ga0075017_1000223172	3300006059	Watersheds	MSASVDDRLLERWLTSRRHQDEARRFLARQRFSDPRGERRALEEIVGTIAQLEQTLHDRAARRRPPAAPAGTPPA*
Ga0075017_1012687262	3300006059	Watersheds	GGDLPIARGMSASVDDRLLERWLTSRRHQDEARRFLARQRFSDPRGERRALEEIVGTIAQLEQTLHDRAARRRPPGAPAGTTPA*
Ga0105044_105858681	3300007521	Freshwater	MTAQIDNRLLEHWQTSRRHQDEARRFLARQRFSDSRGERRGLDEIVGTIADLELALRERATRRIPPPAPPGPLSA*
Ga0105243_118045391	3300009148	Miscanthus Rhizosphere	IDDRLLEHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRRPVRPGPPGPRTA*
Ga0105242_127983291	3300009176	Miscanthus Rhizosphere	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLADPRGESRALEEIVGTIADLEQTLRARASRRRPVRPGPPGPRTA*
Ga0105248_118962582	3300009177	Switchgrass Rhizosphere	MSATIDDRLLEHWEVSRRHQEEARRFLARQNLADPRGESRALEEIVGTIADLEQTLRARASRRRPVRPGPPGPRTA*
Ga0134127_133485631	3300010399	Terrestrial Soil	MSATIDDRLLERWQTSRRHQEEARRFLARQKLADPRGESRALEEIVCTIADLEQTLKARASRRRPVRQTPPGPRT
Ga0150985_1176063262	3300012212	Avena Fatua Rhizosphere	MNANVDNRLLERWQTSCRHQDEARRFLARQRFTNPQGDGRALEEIAGTIADMERILRQRAARPKPQLDGPRPA*
Ga0150984_1097228322	3300012469	Avena Fatua Rhizosphere	VSRRHQEEARRFLARQDLADPRGESRALEEIVGTIADLEQTLRARASRRRPVRPAPSGPRTA*
Ga0157335_10372771	3300012492	Arabidopsis Rhizosphere	MSGIVDDRLLERWETSRRHQDEARRFLARQRFSDAAGERRALDEIVATMTDLEQTLRERAKRRAIQPP
Ga0157338_10453611	3300012515	Arabidopsis Rhizosphere	MSGIVDDRLLERWETSRRHQDEARRFLARQRFSDAVGERRALDEIVATMTDLEQTLRERAKRRAVSLPPAPLAPRPRRAD*
Ga0157295_100298863	3300012906	Soil	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLADPRGESRALEEIVGTIADLEQTLRARAGRRRPVRPAPPGPQTA*
Ga0157295_103797012	3300012906	Soil	MSATIDDRLLEHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRRPARLGPPGPRTA*
Ga0164298_103123311	3300012955	Soil	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRSTRPTHTGPRSA*
Ga0164304_105442222	3300012986	Soil	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGEPRALEEIVGTIADLEQTLRERAARRSTRPRQPGPRSA*
Ga0164307_101992573	3300012987	Soil	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRSTRPRQPGPRSA*
Ga0157374_110517022	3300013296	Miscanthus Rhizosphere	MSGTIDDRLLERWEVSRRHQDEARRFLARQKLSDPRGERRALEEIVGTIADLEQTLRDRANRRRPLRPAPSGPRPA*
Ga0157375_121174062	3300013308	Miscanthus Rhizosphere	SATIDDRLLEHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRRPVRPGPSGPQTA*
Ga0157376_103982183	3300014969	Miscanthus Rhizosphere	MSGIVDDRLLERWETSRRHQDEARRFLARQRFNDAAGERRALDEIVASLTDLEQTLRERAARRATP
Ga0167665_10206962	3300015163	Glacier Forefield Soil	MGAAIDDRLLERWTMSRRHQDEARRFLARQRFSDPRGERCALDEIVGTIADLEQALRERAERRLPPPSPSGLLSA*
Ga0167667_10406132	3300015189	Glacier Forefield Soil	MTAQIDDRLLERWQTSRRHQDEARRFLARQRFTDPRGERRALAEIVGTISDLERTLHERAARRLSPPSPPGPLPA*
Ga0163144_103251514	3300015360	Freshwater Microbial Mat	MTAQIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTISDLEQTLHERAARRLPPPSPPGPLSA*
Ga0132258_125714751	3300015371	Arabidopsis Rhizosphere	MSATIDDRLLERWEVSRRHQDEARRFLARQKLSDPRGEARALEEIVGTIADLEQTLRQRANRRRSVRTGPPGPPSA*
Ga0132257_1005080802	3300015373	Arabidopsis Rhizosphere	MSGIVDDRLLERWEASRRHQDQARRFLVRRYFADPVVERRTLDEIVATLTDLEQELRERAARRAATPSAFPPHPAAG*
Ga0190266_109363941	3300017965	Soil	MSATIDNRLLERWEVSRRHQDEARRFLARQKFSDPKGERRALEEIVGTIADLEQTLRERANRRRPLQQQPPGPRAV
Ga0184634_104558671	3300018031	Groundwater Sediment	MSGTIDDRLLERWEVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRSTRPRQPGPRS
Ga0184624_105386251	3300018073	Groundwater Sediment	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRLPVRPSPPGPRTA
Ga0190274_113041512	3300018476	Soil	MSATIDDRLLEQWEVSRRHQAEARRFLARQKFSDPRGESRALEEIVGTIADLEQTLRQRAGRRSTRSTPPTRPRPRSA
Ga0190274_122552361	3300018476	Soil	MSATIDSRLLERWEVSRRHQDEARRFLARQKFSDPKGERRALEEIVGTIADLEQTLRERANRRRPLQQQPPGPRAV
Ga0190271_100347222	3300018481	Soil	MTAQIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLERTLHARAARRPRPGASGPTPA
Ga0163151_101745342	3300020057	Freshwater Microbial Mat	MTAQIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTISDLEQTLHERAARRLPPPSPPGPLSA
Ga0194051_11137072	3300021470	Anoxic Zone Freshwater	LPAATGFSLSSGLNGRDQRADTGDVTAPIDNRLLERWQTSQRHQDEARRFLSRQRFSDPRGERRALDEIVGTIADLEQTLHARATLREE
Ga0207642_105056751	3300025899	Miscanthus Rhizosphere	MSGTIDDRLLERWEVSRRHQDEARRFLARQKLSDPRGERRALEEIVGTIADLEQTLRDRSNRRRPVRPAPSGPRPA
Ga0207644_107476282	3300025931	Switchgrass Rhizosphere	MSATIDDRLLEHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRRPLRPTPPGPRIA
Ga0207686_107888471	3300025934	Miscanthus Rhizosphere	MSGTIDDRLLERWEVSRRHQDEARRFLARQKLSDPRGERRALEEIVGTIADLEQTLRDRANRRRPVRPAPSGPRPA
Ga0207691_107939251	3300025940	Miscanthus Rhizosphere	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRSTHPRQPGPRSA
Ga0210068_10535322	3300025953	Natural And Restored Wetlands	MSTSVDDRLLERWQTSQRHQGEARRFLARQRCSDPRHEGRELDEIVGTIADLERTLNERATAKHGPNPPAVPGPADIA
Ga0207678_109861993	3300026067	Corn Rhizosphere	WEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRRPLRPTPPGPRIA
Ga0207641_114415122	3300026088	Switchgrass Rhizosphere	MSATIDDRLLQHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRHAARPVPPGPQTA
Ga0207683_101696402	3300026121	Miscanthus Rhizosphere	MSGTIDDRLLERWEVSRRHQDEARRFLARQKLSDPRGERRALEEIVGTIADLEQTLRDRANRRRPLRPAPSGPRPA
Ga0207683_115719781	3300026121	Miscanthus Rhizosphere	RCMSATIDDRLLQHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRHAARPVPPGPQTA
Ga0209798_101086621	3300027843	Wetland Sediment	MSATIDERLLERWQTSRRHQAEARRFLARQRFSDPRGERRALEDIVGTIADLEQTLRDRATRRRPAPPPPGPQSA
Ga0209798_103055142	3300027843	Wetland Sediment	MSATIDDRLLERWQTSRRHQAEARRFLARQRFSDPRGERHALNEIVGTIADLEQTLQKRAARRTPTPPSPGPKRA
Ga0209591_104076751	3300027850	Freshwater	MTAQIDNRLLEHWQTSRRHQDEARRFLARQRFSDSRGERRGLDEIVGTIADLELALRERATRRIPPPAPPGPLSA
Ga0209254_100321281	3300027897	Freshwater Lake Sediment	MGAPIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGEGHALDEIVGTIADLEQTLRDRAARRMPPPSSPGPMSA
Ga0307285_100972072	3300028712	Soil	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRSTRPTQTGPRSA
Ga0302261_10692552	3300028733	Fen	MRAMSATIDERLLERWQTSRRHQDEARRFLARQRFSDPREERRALEEIVGTIADLEQTLHERAARRRPVPPSPPGPASA
Ga0302262_102687111	3300028743	Fen	SSCPAGSTAARRLPIRRDMTAQVDDRLLERWQASRRHQDEARRFLARQKFSDPRGERRALEEIVGTIAELERTLHARAARRVPPAPPSGASPA
Ga0307297_101330421	3300028754	Soil	MSATIDDRLLEQWKVSRRHQDEARRFLARQKFSDPRGERRALEEIVGTIADLEQTLRERAARRSTRPRQPGPRSA
Ga0307503_107732571	3300028802	Soil	MSATIDDRLLERWTVSQRHQDEARRFLARQRLSDPRGERRALEEIVGTISDLEQTLRERAGRRLPPPSTPGPLSA
Ga0302263_100380062	3300028869	Fen	MTAQVDDRLLERWQASRRHQDEARRFLARQKFSDPRGERRALEEIVGTIAELERTLHARAARRVPPAPPSGASPA
Ga0311348_104278401	3300030019	Fen	MTAQVDDRLLERWQASRRHQDEARRFLARQKFSDPRGERRALEEIVGTIAELERTLHARAARRVPPAPPS
Ga0308201_104190211	3300031091	Soil	RLLEHWEVSRRHQDEARRFLARQNLADPRGESRALEEIVGTIADLEQTLRARASRRLPVRPSPPGPRTA
Ga0307497_102104131	3300031226	Soil	IDDRLLQHWEVSRRHQEEARRFLARQNLSDPRGESRALEEIVGTIADLEQTLRARASRRHAARPVPPGPQTA
Ga0302323_1015657361	3300031232	Fen	MSLNRRQLRADMETMSATIDDRLLERWTVSQRHQDEARRFLARQRLSDPRGERRALEEIVGTISDLEQTLRERAARRLPPPSSPGPLSA
Ga0307506_101691501	3300031366	Soil	MSATIDDRLLERWTVSQRHQDEARRFLARQRLSDPRGERRALEEIVGTISDLEQTLRERAGRRLPPPSSPGPLSA
Ga0311351_102103733	3300031722	Fen	MRAMSATIDERLLERWQTSRRHQDEARRFLARQRFSDPRGGRRALEEIVGTIADLEQALHERAARR
Ga0302321_1006155822	3300031726	Fen	MSAIIDERLLERWQTSRRHQDEARRFLARQRFADPRGEQRALEEIVGTIADLEEKLRQRAARPRTARASPSGHPSA
Ga0302321_1009974621	3300031726	Fen	RWQTSRRHQDEARRFLARQKISDPRGERRALAEIVGTIAELEQTLHARAARRVPPTPLVPTPPA
Ga0315290_103320661	3300031834	Sediment	MSATIDDRLLERWTASRRHQDEARRFLARQRLSDPRDERRALDEIVGTIADLEQTLRDRAARRLPPPSAPGPLSA
Ga0315290_104003272	3300031834	Sediment	MRGMSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRVPQQSPPGPPSS
Ga0315290_108987813	3300031834	Sediment	RRQRRADTEGMSATIDDRLLERWTTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLELTLRDRAARRLPSPVSPGPLSA
Ga0302322_1002332163	3300031902	Fen	MTAHVDDRLLERWQTSRRHQDEARRFLARQKISDPRGERRALAEIVGTIAELEQTLHARAARRVPPTPLVPTPPA
Ga0302322_1012482862	3300031902	Fen	ERWQTSRRHQDEARRFLARQRFADPRGEQRALEEIVGTIADLEEKLRQRAARPRTARASPSGHPSA
Ga0315278_101754802	3300031997	Sediment	MRGMSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRVPQQSPPGPLSS
Ga0315278_103604771	3300031997	Sediment	VSATIDDRLLERWTTSRRHQDEARRFLARQEFSEPRGERRALDEIVGTIADLEQMLRDRAARRLPPPVPPGPLSA
Ga0315278_107375102	3300031997	Sediment	MSATIDDRLLERWTTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLELTLRDRAARRLPSPVSPGPLSA
Ga0315292_107158541	3300032143	Sediment	MRSMSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRVPQPSPPGPLSA
Ga0315292_111023942	3300032143	Sediment	HGGNELQPASPFADMRGMSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRLPPPSAPGPLSA
Ga0315283_104571062	3300032164	Sediment	MSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRAPPPSPPGPLSA
Ga0315283_105201052	3300032164	Sediment	MSAIVDNRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRERATRRLPPPSPPGPLSA
Ga0315283_110010521	3300032164	Sediment	MRGMSSTIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRVPQQSPPGPLSS
Ga0315268_106565062	3300032173	Sediment	MRGMSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERGALDEIVGTIADLEQTLRDRAARRAPQPSPPGPLSA
Ga0315276_105782871	3300032177	Sediment	MRGMSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRVPQPSPPGPFSA
Ga0315276_109452191	3300032177	Sediment	MSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLELTLRDRAARRLPPPSPPGPQSA
Ga0315276_124202271	3300032177	Sediment	DDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAGRRAPQPSPPGPLSA
Ga0315271_103114262	3300032256	Sediment	MTASIDDRLLERWQTSRRHQDEARRFLARQRFTDPRGERRALDEIVGTIADLEVTLRERAARRAPTPSPPGPLSA
Ga0315287_104975052	3300032397	Sediment	MTGQIDDRLLERWQMSRRHQEEARRFLAKQRLSDPRGERRALDEIVGTIAGLELALRERATRRTPPPSPPGPLSA
Ga0315287_109501772	3300032397	Sediment	MSASIDDRLLERWTASRRHQDEARRFLARQRLSDPRDERRALDEIVGTIADLEQTLRDRAARRLPPPSAPGPLSA
Ga0315287_118453741	3300032397	Sediment	MSATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAGRRAPQPSPPGPLSA
Ga0315275_116649942	3300032401	Sediment	MRGMSSTIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRDRAARRVPQQSPPGPPSS
Ga0315273_1001893310	3300032516	Sediment	MSAPIDDRLLERWTTSRRHQDEARRFLARQRPSDPRGERRALDEIVGTISDLELTLRDRAARRLPPPAPPGPLSA
Ga0315273_106069471	3300032516	Sediment	MSATIDDRLLERWTTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTISDLEQTLRDRAARRLPPPSPPGPTSA
Ga0315273_124408291	3300032516	Sediment	ATIDDRLLERWQTSRRHQDEARRFLARQRFSDPRGERRALDEIVGTIADLEQTLRERAARREPPPSPPGPLSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089906

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences