Metagenome Family F089882

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089882
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	41 residues
Representative Sequence	DPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRA
Number of Associated Samples	37
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.70 %
% of genes near scaffold ends (potentially truncated)	86.11 %
% of genes from short scaffolds (< 2000 bps)	76.85 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (90.741 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater (39.815 % of family members)
Environment Ontology (ENVO)	Unclassified (39.815 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.09% β-sheet: 9.09% Coil/Unstructured: 81.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13424	TPR_12	1.85
PF13639	zf-RING_2	0.93
PF00240	ubiquitin	0.93
PF00664	ABC_membrane	0.93
PF00075	RNase_H	0.93
PF07714	PK_Tyr_Ser-Thr	0.93
PF00211	Guanylate_cyc	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.70
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
All Organisms	root	All Organisms	9.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
cellular organisms	root	All Organisms → cellular organisms	9.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.56 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.85 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.93 %
Cryptophyceae	class	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.85 %
Pyrenomonadales	order	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	0.93 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.85 %
Geminigeraceae	family	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	0.93 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.85 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.93 %
Geminigeraceae	family	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.93 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.93 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.93 %
Geminigeraceae	family	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.93 %
unclassified Verrucomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae	0.93 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.93 %
Geminigeraceae	family	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.74 %
Verrucomicrobiaceae bacterium TMED86	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium TMED86	0.93 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.93 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.93 %
Geminigeraceae	family	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002447\|JGI24768J34885_10154184	Not Available	775	Open in IMG/M
3300002447\|JGI24768J34885_10283486	Not Available	557	Open in IMG/M
3300002447\|JGI24768J34885_10321454	Not Available	519	Open in IMG/M
3300004126\|Ga0066179_10201801	Not Available	556	Open in IMG/M
3300005517\|Ga0070374_10372559	Not Available	720	Open in IMG/M
3300007561\|Ga0102914_1165358	Not Available	682	Open in IMG/M
3300007585\|Ga0102916_1186205	Not Available	563	Open in IMG/M
3300007593\|Ga0102918_1209487	Not Available	594	Open in IMG/M
3300008055\|Ga0108970_10782884	Not Available	546	Open in IMG/M
3300008108\|Ga0114341_10396238	Not Available	671	Open in IMG/M
3300008114\|Ga0114347_1266129	Not Available	513	Open in IMG/M
3300008119\|Ga0114354_1029179	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	4850	Open in IMG/M
3300008119\|Ga0114354_1087263	Not Available	1260	Open in IMG/M
3300008120\|Ga0114355_1130986	Not Available	925	Open in IMG/M
3300008258\|Ga0114840_1025349	Not Available	980	Open in IMG/M
3300008258\|Ga0114840_1045717	Not Available	697	Open in IMG/M
3300008259\|Ga0114841_1011166	Not Available	4809	Open in IMG/M
3300008259\|Ga0114841_1017551	Not Available	3765	Open in IMG/M
3300008259\|Ga0114841_1018715	Not Available	3638	Open in IMG/M
3300008259\|Ga0114841_1019887	Not Available	3520	Open in IMG/M
3300008259\|Ga0114841_1030881	Not Available	2744	Open in IMG/M
3300008259\|Ga0114841_1039679	Not Available	4137	Open in IMG/M
3300008259\|Ga0114841_1043186	Not Available	2816	Open in IMG/M
3300008259\|Ga0114841_1043728	Not Available	2221	Open in IMG/M
3300008259\|Ga0114841_1056506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1880	Open in IMG/M
3300008259\|Ga0114841_1113259	Not Available	1151	Open in IMG/M
3300008259\|Ga0114841_1155005	Not Available	900	Open in IMG/M
3300008259\|Ga0114841_1185541	Not Available	773	Open in IMG/M
3300008259\|Ga0114841_1252516	Not Available	573	Open in IMG/M
3300008259\|Ga0114841_1271044	Not Available	535	Open in IMG/M
3300008259\|Ga0114841_1273114	Not Available	531	Open in IMG/M
3300013004\|Ga0164293_10612783	Not Available	706	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10305301	Not Available	949	Open in IMG/M
3300017788\|Ga0169931_10880778	Not Available	566	Open in IMG/M
3300020151\|Ga0211736_10558721	Not Available	517	Open in IMG/M
3300020537\|Ga0208722_1027417	Not Available	834	Open in IMG/M
3300027563\|Ga0209552_1082270	Not Available	879	Open in IMG/M
3300027679\|Ga0209769_1022054	Not Available	2243	Open in IMG/M
3300027679\|Ga0209769_1270593	Not Available	513	Open in IMG/M
3300027756\|Ga0209444_10089086	Not Available	1287	Open in IMG/M
3300027836\|Ga0209230_10126976	Not Available	1439	Open in IMG/M
3300027836\|Ga0209230_10175986	Not Available	1226	Open in IMG/M
3300027836\|Ga0209230_10276224	Not Available	968	Open in IMG/M
3300027836\|Ga0209230_10293778	Not Available	936	Open in IMG/M
3300027836\|Ga0209230_10316818	Not Available	898	Open in IMG/M
3300027836\|Ga0209230_10326038	Not Available	884	Open in IMG/M
3300027836\|Ga0209230_10386899	Not Available	802	Open in IMG/M
3300027836\|Ga0209230_10424318	Not Available	760	Open in IMG/M
3300027836\|Ga0209230_10498330	Not Available	691	Open in IMG/M
3300027836\|Ga0209230_10535123	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300027836\|Ga0209230_10543504	Not Available	656	Open in IMG/M
3300027836\|Ga0209230_10555174	Not Available	647	Open in IMG/M
3300027836\|Ga0209230_10762660	Not Available	528	Open in IMG/M
3300027836\|Ga0209230_10787519	Not Available	517	Open in IMG/M
3300027892\|Ga0209550_10457951	Not Available	775	Open in IMG/M
3300031758\|Ga0315907_10251426	Not Available	1466	Open in IMG/M
3300031758\|Ga0315907_11258293	Not Available	514	Open in IMG/M
3300031784\|Ga0315899_10031124	Not Available	5626	Open in IMG/M
3300031784\|Ga0315899_10035953	All Organisms → cellular organisms → Bacteria	5215	Open in IMG/M
3300031784\|Ga0315899_10056707	Not Available	4089	Open in IMG/M
3300031784\|Ga0315899_10059106	Not Available	3995	Open in IMG/M
3300031784\|Ga0315899_10081917	All Organisms → cellular organisms → Bacteria	3337	Open in IMG/M
3300031784\|Ga0315899_10118308	Not Available	2719	Open in IMG/M
3300031784\|Ga0315899_10119073	All Organisms → cellular organisms → Bacteria	2709	Open in IMG/M
3300031784\|Ga0315899_10135593	Not Available	2518	Open in IMG/M
3300031784\|Ga0315899_10143350	Not Available	2440	Open in IMG/M
3300031784\|Ga0315899_10170874	Not Available	2207	Open in IMG/M
3300031784\|Ga0315899_10198240	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	2024	Open in IMG/M
3300031784\|Ga0315899_10377343	Not Available	1384	Open in IMG/M
3300031784\|Ga0315899_10532051	Not Available	1120	Open in IMG/M
3300031784\|Ga0315899_10726150	Not Available	919	Open in IMG/M
3300031784\|Ga0315899_10845903	All Organisms → cellular organisms → Eukaryota	831	Open in IMG/M
3300031784\|Ga0315899_11467167	Not Available	573	Open in IMG/M
3300031784\|Ga0315899_11759485	Not Available	506	Open in IMG/M
3300031786\|Ga0315908_10068677	Not Available	2768	Open in IMG/M
3300031786\|Ga0315908_10185173	Not Available	1723	Open in IMG/M
3300031786\|Ga0315908_10213033	Not Available	1605	Open in IMG/M
3300031786\|Ga0315908_10222958	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium TMED86	1569	Open in IMG/M
3300031786\|Ga0315908_11568880	Not Available	511	Open in IMG/M
3300031787\|Ga0315900_11076284	Not Available	520	Open in IMG/M
3300031787\|Ga0315900_11094215	Not Available	514	Open in IMG/M
3300031857\|Ga0315909_10149896	Not Available	1923	Open in IMG/M
3300032050\|Ga0315906_10932038	Not Available	662	Open in IMG/M
3300032050\|Ga0315906_11155638	Not Available	566	Open in IMG/M
3300032092\|Ga0315905_10043267	Not Available	4574	Open in IMG/M
3300032092\|Ga0315905_10055845	All Organisms → cellular organisms → Eukaryota	4009	Open in IMG/M
3300032092\|Ga0315905_10071675	Not Available	3508	Open in IMG/M
3300032092\|Ga0315905_10222155	Not Available	1848	Open in IMG/M
3300032092\|Ga0315905_10268232	Not Available	1650	Open in IMG/M
3300032092\|Ga0315905_10285090	Not Available	1590	Open in IMG/M
3300032092\|Ga0315905_10395598	Not Available	1299	Open in IMG/M
3300032092\|Ga0315905_10508742	Not Available	1107	Open in IMG/M
3300032092\|Ga0315905_10600659	Not Available	994	Open in IMG/M
3300032092\|Ga0315905_11095733	Not Available	660	Open in IMG/M
3300032092\|Ga0315905_11375039	Not Available	563	Open in IMG/M
3300032116\|Ga0315903_10241849	Not Available	1567	Open in IMG/M
3300032116\|Ga0315903_10373507	Not Available	1172	Open in IMG/M
3300032116\|Ga0315903_10882795	Not Available	641	Open in IMG/M
3300034066\|Ga0335019_0719999	Not Available	571	Open in IMG/M
3300034066\|Ga0335019_0757034	Not Available	552	Open in IMG/M
3300034095\|Ga0335022_0283306	Not Available	948	Open in IMG/M
3300034095\|Ga0335022_0398994	Not Available	744	Open in IMG/M
3300034103\|Ga0335030_0895604	Not Available	511	Open in IMG/M
3300034121\|Ga0335058_0676585	Not Available	571	Open in IMG/M
3300034121\|Ga0335058_0811343	Not Available	509	Open in IMG/M
3300034166\|Ga0335016_0507013	Not Available	678	Open in IMG/M
3300034357\|Ga0335064_0166779	Not Available	1374	Open in IMG/M
3300034357\|Ga0335064_0718624	Not Available	617	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.07%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	96.30%
Marine	Environmental → Aquatic → Marine	2.78%
Leaf	Host-Associated → Plants → Leaf	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	39.81%
Lake	Environmental → Aquatic → Freshwater → Lake	33.33%
Lentic	Environmental → Aquatic → Freshwater → Lentic	23.15%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.78%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	39.81%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	33.33%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	22.22%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.78%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.93%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	39.81%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	20.37%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	15.74%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	12.04%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	6.48%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.78%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.93%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002447	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome	Environmental	Open in IMG/M
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental	Open in IMG/M
3300007585	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3	Environmental	Open in IMG/M
3300007593	Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental	Open in IMG/M
3300008119	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA	Environmental	Open in IMG/M
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental	Open in IMG/M
3300008258	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA	Environmental	Open in IMG/M
3300008259	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300014720 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m	Environmental	Open in IMG/M
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020537	Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300027563	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027836	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental	Open in IMG/M
3300031786	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124	Environmental	Open in IMG/M
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental	Open in IMG/M
3300034095	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034121	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174	Environmental	Open in IMG/M
3300034166	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079	Environmental	Open in IMG/M
3300034357	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24768J34885_101541841	3300002447	Freshwater And Sediment	RGERTDDPQTMRGGRTGHYVLTPAQGLERGRDGGEVKVMTVTRA*
JGI24768J34885_102834862	3300002447	Freshwater And Sediment	MGGERTGRQALTPAQGLERGRDGGEVKIMTVTRAGPKVE*
JGI24768J34885_103214542	3300002447	Freshwater And Sediment	MRGGSTSRRALTPAQGLERGRDGGEVKVMTVTQAGPYSRVGM
Ga0066179_102018011	3300004126	Freshwater Lake	MSMLDPQAMRGDRTGRHALTPVQGLERGRDGGEVKVMTVTRA
Ga0070374_103725592	3300005517	Freshwater Lake	MRGGRTGRYALTPAQGLERGRDGREVKVMTVTRAGPIVE*
Ga0102914_11653581	3300007561	Estuarine	VKGAGTDDPQAERGERSGRRALTPAQGLERGRDGGEVKIMTVTRA*
Ga0102916_11862051	3300007585	Estuarine	MRGGSTGSYALTPAQGLERGRDGGEVKVMTVIRA*
Ga0102918_12094872	3300007593	Estuarine	MRGGRTSHRALKPAQGLERGRDGGEVKVMTVIWAWLIV
Ga0108970_107828841	3300008055	Estuary	MRGEHTGPFALTPAQGLERGRDGGEVKVMTVIRA*
Ga0114341_103962381	3300008108	Freshwater, Plankton	MRGGRTSHHALKPAQGLERGRDGGEVKVMTVIRAWPIV
Ga0114347_12661291	3300008114	Freshwater, Plankton	QAMRGGRTSRRELKLAQGLERGRDGGEVKVMTVIRAGPIVE*
Ga0114354_10291791	3300008119	Freshwater, Plankton	ERTDDPQTMRGGRTGRYALTPAQGLERGRDGGEVKVMTVTRA*
Ga0114354_10872633	3300008119	Freshwater, Plankton	ERTDDPQTMRGGRTGRYALTPAQGLERGRDGGEVKVMTFTRA*
Ga0114355_11309861	3300008120	Freshwater, Plankton	DGSQIRRSERTSHRTLNPAQGLERGRDEGEVKVMTYIRA*
Ga0114840_10253491	3300008258	Freshwater, Plankton	KGEGTDDPQAMRGDRTGRHALTPDQGLERGRDGGEVKVMTVTRA*
Ga0114840_10457172	3300008258	Freshwater, Plankton	GERTDDPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRA*
Ga0114841_10111664	3300008259	Freshwater, Plankton	MRGGCTSHRALKPAQGLERGRDGGEVKVMTVIWAWLIVE*
Ga0114841_10175511	3300008259	Freshwater, Plankton	MRSGSNGSYALTPAQGLERGRDGGEVKVMTVTRA*
Ga0114841_10187153	3300008259	Freshwater, Plankton	MRGGRTSRRELKLAQGLERGRDGGEVKVMTVIRAGPIVE*
Ga0114841_10198877	3300008259	Freshwater, Plankton	MRGGRTSHRALKPAQGLERGRDGGEVKVMTVIRAGPIVE*
Ga0114841_10308811	3300008259	Freshwater, Plankton	DPQSMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRA*
Ga0114841_103967912	3300008259	Freshwater, Plankton	KGERTDDPQAMRGDRTGRRALTPAQGLERGRDGGEVKVMTVTRE*
Ga0114841_10431863	3300008259	Freshwater, Plankton	KGERTDDPQAMRGDRTGRRALTPAQGLERGRDGGEVKVMTVIRA*
Ga0114841_10437283	3300008259	Freshwater, Plankton	MRGGRTSLRALKPAQGLERGRDGGEVKVITVIRVGPIVE*
Ga0114841_10565061	3300008259	Freshwater, Plankton	DPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRARPIVE*
Ga0114841_11132591	3300008259	Freshwater, Plankton	PQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRAGPIIE*
Ga0114841_11550051	3300008259	Freshwater, Plankton	DPQTMRGGRTGRYALTPAQGLERGRDGGEVKVMTVTRASMIYSRGNM*
Ga0114841_11855412	3300008259	Freshwater, Plankton	KGERTDDPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRA*
Ga0114841_12525162	3300008259	Freshwater, Plankton	ERTDDPQAMRGERTGRRALTPAQGLERGRDGGEVKVMRVTRA*
Ga0114841_12710441	3300008259	Freshwater, Plankton	PQAMRGERTGRRALTPAQGLERGRDGGEVKVMAVIRA*
Ga0114841_12731141	3300008259	Freshwater, Plankton	GTDDPQAERGERTGRRALTPAQGLERGRDGGEVKVMTVTRA*
Ga0164293_106127831	3300013004	Freshwater	AERGERTGRRALTPAQGLERGRDGGEVKIMTVTRA*
(restricted) Ga0172376_103053012	3300014720	Freshwater	GAGTDDPHAERGERTGRCALTTAQGLERGRDGGEVKIMTITRA*
Ga0169931_108807782	3300017788	Freshwater	GTDDPQAERGERTGRRALTPAQGLERGRDGGEVKIMTVTRT
Ga0211736_105587211	3300020151	Freshwater	TKGERTDDPQTMRSGRTGHRTLKPAQGLERGRDEGEVKVMTYIRA
Ga0208722_10274171	3300020537	Freshwater	PQAERGERTSCHALTPAQGLERGRDGGEVKVMTVTRA
Ga0209552_10822701	3300027563	Freshwater Lake	MRGGRTSHRALKPAQGLERGRDGGEVKVMTVIWAWLIVELL
Ga0209769_10220541	3300027679	Freshwater Lake	AMRGDRTGRHALTPVQGLERGRDGGEVKVMTVTRA
Ga0209769_12705931	3300027679	Freshwater Lake	NLGKGERTDDPQTMRGGRTSRRALTPAQGLERGRDGGEVKVMTVTRTGPIVE
Ga0209444_100890861	3300027756	Freshwater Lake	QTMRGGRTGRYALTPAQGLERGRDGGEVKVMTVTRA
Ga0209230_101269761	3300027836	Freshwater And Sediment	DDPQAERGECTGRRALTPAQGLERGRDGGEVKVMTVTRA
Ga0209230_101759861	3300027836	Freshwater And Sediment	ERTDDPQTMRGGRNSRRALKPAQGLERGRDGGEVKVMTVTRAGPIVE
Ga0209230_102762242	3300027836	Freshwater And Sediment	DPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRA
Ga0209230_102937782	3300027836	Freshwater And Sediment	DPQAERGERTGRCALTPAQGLERGRDGGEVKVMTVTRAGPIVE
Ga0209230_103168181	3300027836	Freshwater And Sediment	AMRGGRTSRRALTPAQGLERGRDGGEVKVMTVTRAGPIVE
Ga0209230_103260383	3300027836	Freshwater And Sediment	DPRTMRSGSNGSYALTPAQGQERGRDGGEVKVMTVKRA
Ga0209230_103868991	3300027836	Freshwater And Sediment	KGERTDDPQTMRGGRTSHRALKPAQGLERGRDGGEVRVMTVICAWLIVE
Ga0209230_104243182	3300027836	Freshwater And Sediment	DDPQTMRGGRTGHYVLTPAQGLERGRDGGEVKVMTVTRA
Ga0209230_104983301	3300027836	Freshwater And Sediment	TDDPQSERGERTSCHALTPAQGLERGRDGGEVKVMTVTRA
Ga0209230_105351231	3300027836	Freshwater And Sediment	PRAMRGERTSRSALTAAQGLERGRDGGEVKAMTVTRAGPIAE
Ga0209230_105435041	3300027836	Freshwater And Sediment	EGTDDPQATRGERTGRRALTPAQGLERGRDGGEVKVMTVTRAFKFS
Ga0209230_105551741	3300027836	Freshwater And Sediment	MRGGRTSRRELKLAQGLERGRDGGEVKVMTVIRAGAIV
Ga0209230_107626602	3300027836	Freshwater And Sediment	KGEGTDDPQAERGERTGRRALTPAQGLERGRDGGEVKVMTVARA
Ga0209230_107875191	3300027836	Freshwater And Sediment	RRTDDPQTMRGGSTGSYALTPAQGLERGRDGGEVKVMTVIRA
Ga0209550_104579511	3300027892	Freshwater Lake	HSLSERTDDPQTMRSGRTGHRTLKPAQGLERGRDGGEVKVMVVIRA
Ga0315907_102514261	3300031758	Freshwater	QSMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRA
Ga0315907_112582931	3300031758	Freshwater	MRGGRTSHRALKPAQGLERGRDGGEVKFMTVIRAWPI
Ga0315899_100311241	3300031784	Freshwater	VKGERTDDPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRA
Ga0315899_100359535	3300031784	Freshwater	MGDRTDDPQTMRSGRTGHRTLKPAQGLERGRDGGEVKVMVVIRA
Ga0315899_100567075	3300031784	Freshwater	ERGERTSRHALTPAQGLERGRDGGEVKVMTVTRDPGVPVLH
Ga0315899_100591061	3300031784	Freshwater	LGKGERTDDPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRAGPIVE
Ga0315899_100819176	3300031784	Freshwater	MRGGCTSHRALKPAQGLERGRDGGEVKVMTVIWAWLIVE
Ga0315899_101183081	3300031784	Freshwater	MRGGRTSRRALKPAQGLERGRDGGEVKVMTVTRAGPITHGFFFWASIDLI
Ga0315899_101190734	3300031784	Freshwater	ERTDDPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRARPTVE
Ga0315899_101355931	3300031784	Freshwater	ERTDDPQTMRSGSNGSYALTPAQGLERGRDGGEVKVMTVTRA
Ga0315899_101433505	3300031784	Freshwater	GTDDPQAERGERTGRRALTPAQGLERGRDGGEVKVMTVARA
Ga0315899_101708741	3300031784	Freshwater	VRGERTDDPQTMRSGSNGSHALTLPRVWRGRDGGEVKVMTVTRA
Ga0315899_101982402	3300031784	Freshwater	MRGGRTSLRALKPAQGLERGRDGGEVKVITVIRVGPIVE
Ga0315899_103773432	3300031784	Freshwater	MRGELTGRRALKAAQGLERGRNGGEVKVMTVTRAGPIVE
Ga0315899_105320512	3300031784	Freshwater	RTDDPQAMRGERTGRCALTPAQGLERGRDGGEVKVMTVTRA
Ga0315899_107261501	3300031784	Freshwater	RTDDPQAMRGERTGRRALTPAQGLERGRDGGEVKVMTVTRAGPIIE
Ga0315899_108459031	3300031784	Freshwater	TDDPQTMRGGSTGSYALTPAQGLERGREGGEVTVMTVIRA
Ga0315899_114671671	3300031784	Freshwater	TDDPQVMRGECTGRRALTPVQGLERGRDGGEVKVMTVIRV
Ga0315899_117594851	3300031784	Freshwater	DPQAERGERTSRRALTPAQGLERGRDGGEVKVMTVTRA
Ga0315908_100686773	3300031786	Freshwater	MRGGRTSRRELKLAQGLERGRDGGEVKVMTVIRAGPIVE
Ga0315908_101851731	3300031786	Freshwater	TDDPQAERGERTGRRALTPAQGLERGRDGGEVKIMTVTRA
Ga0315908_102130331	3300031786	Freshwater	DDPQAERGERTGRCALTPAQGLERGRDGGEVKVMTVTRAGPIVE
Ga0315908_102229584	3300031786	Freshwater	ERTDDPQTMRGERTGRCALTPAQGLERGRDGGEVKAMTVTRA
Ga0315908_115688802	3300031786	Freshwater	VKGEGTDDPQAERGERTGRRALTPAQGLERGRDGGEVKVMTVARA
Ga0315900_110762841	3300031787	Freshwater	DPQTMRGGSTGSYALTPAQGLERGRDGGEVKVMTVIRA
Ga0315900_110942151	3300031787	Freshwater	TDDPQSMRGGRTSRRALKPAQGLERGRDGGEVKIMTVTRAGPIVA
Ga0315909_101498963	3300031857	Freshwater	ERTVDPQTMRGGRTSHRALKHAQGLERGRDGGEVKIMAVIWA
Ga0315906_109320381	3300032050	Freshwater	RTDDPQTMRGGCTGRYALTPAQGLERGRDGGEVKVMTVIRA
Ga0315906_111556381	3300032050	Freshwater	GRGEHTGLRALTPAQGLERGRDGGEVKVMTVTRSGPIVE
Ga0315905_100432671	3300032092	Freshwater	EGTDDPQAERGERTGRRALTPAQGLERGRDGGEVKVMTVARA
Ga0315905_100558455	3300032092	Freshwater	TDDPQAERGERTGRRALTPAQGLERGRDGGEVKVMTVTRA
Ga0315905_100716751	3300032092	Freshwater	DDPQAMRGERTGCRALTPAQGLERGRDGGEVKVMTVTRA
Ga0315905_102221553	3300032092	Freshwater	RTDDPQAMRGESTSCRALTPAQGLERGRDGGEVKVMTVTRA
Ga0315905_102682323	3300032092	Freshwater	MRGEDHHKGERTDNPQAMRGERTSLRALTPAQGLERGRDGGEVKVMTVTRSGPIVE
Ga0315905_102850901	3300032092	Freshwater	CIQKTLRRLGKDERTGGPEVRRSGCTSHRTLNPAQGLERGRRGGEVKVMTCIWA
Ga0315905_103955981	3300032092	Freshwater	TDDPQTMRGGRNSRRALKPAQGLERGRDGGEVKVMTVTRAGPIVE
Ga0315905_105087421	3300032092	Freshwater	KGERTDDPQAMRGERKGWRALTPAQGLERGRDGGEVKVMTVTRA
Ga0315905_106006591	3300032092	Freshwater	PQAERVERTGRRALTPAQGLERGRDGGEVKVMRVTRA
Ga0315905_110957332	3300032092	Freshwater	TDDPQTMRGGRTGRYALTPAQGLERGRDGGEVKVMTVTRASMIYSRGNM
Ga0315905_113750391	3300032092	Freshwater	ERTDDPQTMRGERTGRYALTPAQGLERGRDGGEVKVMTVTRA
Ga0315903_102418493	3300032116	Freshwater	DPETERGERTGRRALTPAQGLERGRDGGEEKVMTVTRT
Ga0315903_103735071	3300032116	Freshwater	MIGDPQAEGGGRTSCHALTPAQGLERGRDGGEEKV
Ga0315903_108827951	3300032116	Freshwater	DPQTMRGGRTGRYALTPAQGLERGRDGGEVKVMTVTRA
Ga0335019_0719999_463_570	3300034066	Freshwater	MSMLDPQAMRGERTGRHALTPVQGLERGRDGGEVKV
Ga0335019_0757034_440_550	3300034066	Freshwater	MRGGRTSRRALTPAQGLERGRDGGEVKVMTVTRAGPI
Ga0335022_0283306_1_132	3300034095	Freshwater	KGESTDDPQAMRGERTGRRALTPAQGLERGRDGGEVKVVTGTE
Ga0335022_0398994_3_116	3300034095	Freshwater	PQAMRGERTGRRALKPAQGLERDRDGGEVKVMTVTRA
Ga0335030_0895604_403_510	3300034103	Freshwater	MRGGRTSRRALKPAQGLERGRDGGEVKVMTVTRAGP
Ga0335058_0676585_2_118	3300034121	Freshwater	MRGGRTSRRALKPAQGLERGRDGGEVKVMTVTRAGPIVE
Ga0335058_0811343_400_507	3300034121	Freshwater	TMRGGRTGRYALTPAQGLERGRDGGEVKVMTVTRA
Ga0335016_0507013_3_125	3300034166	Freshwater	MRGGRTSRSALKPAQGLERGRDGGEVKVMTVTRAGPITHGF
Ga0335064_0166779_1241_1372	3300034357	Freshwater	GERTDDPQTMRGGSTGSYALTPAQGLERGRDGGEVKVMTVIRA
Ga0335064_0718624_509_616	3300034357	Freshwater	AMRGERTGRRALKPAQGLERDRDGGEVKVMTVTRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters