Metagenome / Metatranscriptome Family F089775

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089775
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	69 residues
Representative Sequence	MQPPDTLPPSWQRLLALSGVVFAVLFLVGWFASGGDAPDYGAPDQDWTNWADDNQWKSRIGAFAMLLAGFVF
Number of Associated Samples	88
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	31.48 %
% of genes near scaffold ends (potentially truncated)	98.15 %
% of genes from short scaffolds (< 2000 bps)	94.44 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.074 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.519 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.00% β-sheet: 0.00% Coil/Unstructured: 49.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF14329	DUF4386	94.44
PF08448	PAS_4	0.93
PF04202	Mfp-3	0.93
PF14342	DUF4396	0.93
PF00440	TetR_N	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.07 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	93.52 %
Calditrichaeota	phylum	All Organisms → cellular organisms → Bacteria → Calditrichaeota	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	93.52 %
Calditrichia	class	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	38.89 %
Calditrichales	order	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	37.96 %
Calditrichaceae	family	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	37.96 %
unclassified Calditrichaceae	no rank	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → unclassified Calditrichaceae	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	37.96 %
Calditrichaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → unclassified Calditrichaceae → Calditrichaceae bacterium	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000953\|JGI11615J12901_10188071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	829	Open in IMG/M
3300000956\|JGI10216J12902_100202936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4867	Open in IMG/M
3300003987\|Ga0055471_10009087	All Organisms → Viruses → Predicted Viral	2091	Open in IMG/M
3300003993\|Ga0055468_10037306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1175	Open in IMG/M
3300003996\|Ga0055467_10280015	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → unclassified Calditrichaceae → Calditrichaceae bacterium	531	Open in IMG/M
3300003997\|Ga0055466_10185329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300003999\|Ga0055469_10309672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300004463\|Ga0063356_104127974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300004643\|Ga0062591_102896089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300005162\|Ga0066814_10100355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300005329\|Ga0070683_101280699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	704	Open in IMG/M
3300005344\|Ga0070661_101926793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300005354\|Ga0070675_100047200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3529	Open in IMG/M
3300005364\|Ga0070673_100473524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1129	Open in IMG/M
3300005438\|Ga0070701_11075297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300005445\|Ga0070708_101913172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300005539\|Ga0068853_101337578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300005546\|Ga0070696_101923555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300005617\|Ga0068859_100309770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1673	Open in IMG/M
3300009094\|Ga0111539_10238178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2118	Open in IMG/M
3300009098\|Ga0105245_10785683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	989	Open in IMG/M
3300009098\|Ga0105245_13063022	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → unclassified Calditrichaceae → Calditrichaceae bacterium	518	Open in IMG/M
3300009120\|Ga0117941_1081756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	875	Open in IMG/M
3300009146\|Ga0105091_10514829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300009148\|Ga0105243_10656597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1017	Open in IMG/M
3300009148\|Ga0105243_11278167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	750	Open in IMG/M
3300009148\|Ga0105243_11650010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	669	Open in IMG/M
3300009156\|Ga0111538_13104224	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300009553\|Ga0105249_13119439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	532	Open in IMG/M
3300010039\|Ga0126309_10325328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M
3300010039\|Ga0126309_10813045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	611	Open in IMG/M
3300010045\|Ga0126311_10692293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	814	Open in IMG/M
3300010373\|Ga0134128_12644963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300010375\|Ga0105239_12590358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	591	Open in IMG/M
3300010375\|Ga0105239_12780344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300010403\|Ga0134123_10335066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1358	Open in IMG/M
3300011119\|Ga0105246_10855356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300011440\|Ga0137433_1109979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	867	Open in IMG/M
3300012891\|Ga0157305_10135086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648	Open in IMG/M
3300012907\|Ga0157283_10358189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	528	Open in IMG/M
3300012910\|Ga0157308_10079875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	922	Open in IMG/M
3300012911\|Ga0157301_10065589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	980	Open in IMG/M
3300012911\|Ga0157301_10251208	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → unclassified Calditrichaceae → Calditrichaceae bacterium	622	Open in IMG/M
3300012958\|Ga0164299_10511076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	801	Open in IMG/M
3300012984\|Ga0164309_10248051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1254	Open in IMG/M
3300012987\|Ga0164307_10425465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	985	Open in IMG/M
3300013307\|Ga0157372_13382208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300014302\|Ga0075310_1080551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	669	Open in IMG/M
3300014488\|Ga0182001_10521872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300014969\|Ga0157376_12417775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300015077\|Ga0173483_10125049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1105	Open in IMG/M
3300015077\|Ga0173483_10179089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	959	Open in IMG/M
3300015077\|Ga0173483_10468718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300015170\|Ga0120098_1075445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300015372\|Ga0132256_102160163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	662	Open in IMG/M
3300015372\|Ga0132256_103197732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300015373\|Ga0132257_101621295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	828	Open in IMG/M
3300015373\|Ga0132257_104435065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300015374\|Ga0132255_104033751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	623	Open in IMG/M
3300018031\|Ga0184634_10476553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300018066\|Ga0184617_1013358	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M
3300018073\|Ga0184624_10232494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	825	Open in IMG/M
3300018466\|Ga0190268_10331903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	934	Open in IMG/M
3300018466\|Ga0190268_11183056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632	Open in IMG/M
3300018469\|Ga0190270_10049337	All Organisms → cellular organisms → Bacteria	2912	Open in IMG/M
3300018481\|Ga0190271_10799795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1067	Open in IMG/M
3300018481\|Ga0190271_12168439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300018481\|Ga0190271_12647241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300018910\|Ga0193598_1052579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	971	Open in IMG/M
3300019356\|Ga0173481_10493740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300019356\|Ga0173481_10829823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300022883\|Ga0247786_1089389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658	Open in IMG/M
3300022893\|Ga0247787_1037526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300022903\|Ga0247774_1126406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300023077\|Ga0247802_1083308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300023077\|Ga0247802_1094436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300025912\|Ga0207707_10085777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2751	Open in IMG/M
3300025920\|Ga0207649_11481160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300025920\|Ga0207649_11484783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300025933\|Ga0207706_10289302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1428	Open in IMG/M
3300025934\|Ga0207686_11084367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	652	Open in IMG/M
3300025935\|Ga0207709_11201767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300025938\|Ga0207704_10442241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1036	Open in IMG/M
3300025940\|Ga0207691_10583459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	947	Open in IMG/M
3300026028\|Ga0208420_1005156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1103	Open in IMG/M
3300026089\|Ga0207648_10514828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1096	Open in IMG/M
3300026089\|Ga0207648_11706006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	591	Open in IMG/M
3300026116\|Ga0207674_11251692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	711	Open in IMG/M
3300026116\|Ga0207674_12224384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300026535\|Ga0256867_10312711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300027876\|Ga0209974_10108220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	976	Open in IMG/M
3300028771\|Ga0307320_10333312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300028880\|Ga0307300_10145433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300030006\|Ga0299907_10634934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	826	Open in IMG/M
3300031091\|Ga0308201_10275182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300031228\|Ga0299914_10376834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1241	Open in IMG/M
3300031547\|Ga0310887_10322918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300031903\|Ga0307407_10353207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300031908\|Ga0310900_11660579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300032002\|Ga0307416_103771275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300032012\|Ga0310902_10736333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	667	Open in IMG/M
3300032013\|Ga0310906_10374375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	933	Open in IMG/M
3300032075\|Ga0310890_10201927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1364	Open in IMG/M
3300032075\|Ga0310890_10997257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300032122\|Ga0310895_10175906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	945	Open in IMG/M
3300032122\|Ga0310895_10192975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	910	Open in IMG/M
3300034137\|Ga0334943_109039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300034377\|Ga0334931_100458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	676	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.81%
Host-Associated	Host-Associated	35.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.63%
Plants	Host-Associated → Plants	35.19%
Aquatic	Environmental → Aquatic	10.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.07%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.11%
Marine	Environmental → Aquatic → Marine	4.63%
Sediment	Environmental → Aquatic → Sediment	4.63%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.33%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.63%
Loam	Environmental → Terrestrial → Soil → Loam	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Fossil	Environmental → Terrestrial → Soil → Fossil	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.41%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.93%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.93%
Unclassified	Environmental → Terrestrial → Soil → Fossil → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	7.41%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Lake Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Fossill	Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009120	Lake sediment microbial communities from Tanners Lake, St. Paul, MN	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015170	Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018910	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4	Environmental	Open in IMG/M
3300022903	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026028	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300034137	Biocrust microbial communities from Mojave Desert, California, United States - 39SMC	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_101880711	3300000953	Soil	VFAVLFLVGWFASGGDAPDYGASDEAWTNWADENQWKSRIGAFAMLLAGFVFLHFAGMIRSV
JGI10216J12902_1002029367	3300000956	Soil	MQPPDPLPKTSPRLLALSGVVFAVLFLIGWFASGGDAPDYGAPDQDWTNWAEDNQWKSRIGAFAMLLA
Ga0055471_100090874	3300003987	Natural And Restored Wetlands	MTDRSFDMSEEGPSDLPLSWQRLLALSGVAFAILFLIGWFASGGDAPDYGASDQDWTNWADDNQWESRIGAFAMLLAGFVFLH
Ga0055468_100373061	3300003993	Natural And Restored Wetlands	LALSGVVFAVLFLVGWFASGGDAPDYGAADEDWTNWADENQWKSRIGAFAMLLAGFVFLHFAGMI
Ga0055467_102800152	3300003996	Natural And Restored Wetlands	MTGHVSAEQSANSLPLSWQRLLALSGVAFAVLFLIGWFASGGDAPDYGASDQDWTTWADD
Ga0055466_101853291	3300003997	Natural And Restored Wetlands	MTDRSFDMSEEGPSDLPLSWQRLLALSGVAFAILFLIGWFASGGDAPDYGASDQDWTNWADDNQWESRIGAFAMLLAGFVFLHFAGAIRTALG
Ga0055469_103096722	3300003999	Natural And Restored Wetlands	MTGHVSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQDWTSWASDNQWKSRIGAFAMLLAG
Ga0063356_1041279742	3300004463	Arabidopsis Thaliana Rhizosphere	MQGPDAVPSSSQRLLALSGVVFAVLFLVGWFASGGDAPDYGASDEAWTNWADENQWKSRIGAFAMLLAGFVFLHFAGM
Ga0062591_1028960892	3300004643	Soil	MLPLSGVAFAVLFLIGWFASGGDAPDYTAPDQAWATWAEDNQWRSRIGAFAMLLAG
Ga0066814_101003551	3300005162	Soil	MELPDTLPPSWQRLLALSGVAFAVLFVIGWFASGGDAPDYSASDEAWTNWADENQWKSRIGA
Ga0070683_1012806992	3300005329	Corn Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFAML
Ga0070661_1019267932	3300005344	Corn Rhizosphere	MELPDSVAPPRQRLLALSGVAFAVLFVIGWFASGGDAPDYGASDEAWTNWADENQWKSRI
Ga0070675_1000472001	3300005354	Miscanthus Rhizosphere	MTSHMSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNQWKS
Ga0070673_1004735241	3300005364	Switchgrass Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFAMLL
Ga0070701_110752971	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MSVDRSSDALSLSWQRLLALSGVVFGVLFVVGWFASGGDAPDYGASDQEWTNWADDNQWKSRIGAFAML
Ga0070708_1019131721	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSVDRSSDALSLSWQRLLALSGVVFGVLFVVGWFASGGDAPDYGASDQDWTNWADDNQWKSRIGAFAML
Ga0068853_1013375782	3300005539	Corn Rhizosphere	MTGHVSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFAMLLAGFVFLHFA
Ga0070696_1019235551	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFAMLLAGFVF
Ga0068859_1003097701	3300005617	Switchgrass Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKS
Ga0111539_102381781	3300009094	Populus Rhizosphere	VFGVLFVVGWFASGGDAPDYGASDQDWTNWADDNQWKSRIGAFAMLLAGF
Ga0105245_107856832	3300009098	Miscanthus Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRI
Ga0105245_130630222	3300009098	Miscanthus Rhizosphere	MTGQASAEQSANSLPLSWQRVLALSGIAFAVLFLIGWFASGGDAPDYGASDQDWTSWASDNQWKS
Ga0117941_10817562	3300009120	Lake Sediment	VIRPPDAVPTAWERLLALSGVVFALLFLIGWFASGGDTPDYGGTDQDWTEWAEDNQWG
Ga0105091_105148292	3300009146	Freshwater Sediment	MQSPDTLPPSWQRLLALSGVVFAVLFLVGWFASGGDAPDYGASDQDWTNWADDNQWKSRIGAFAMLLAGFVFLHFAGMIRSVLGR
Ga0105243_106565971	3300009148	Miscanthus Rhizosphere	LLALSGVAFAALFVIGWFASGGDAPDYNAPDQDWATWAEDNQWKSRIGAFAM
Ga0105243_112781671	3300009148	Miscanthus Rhizosphere	MRSPDARPTALQRLLAGSGVFFAVLFLIGWFVSGGDAPDYGAPDQDWTEWADNNQWKSRIGAFAMLLAGFVFLY
Ga0105243_116500102	3300009148	Miscanthus Rhizosphere	MTSHMSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWANWADDNQWKSRIGAFAMLLAGFVFLHF
Ga0111538_131042241	3300009156	Populus Rhizosphere	MQSPESLPTKGQRLLALSGVAFAVLFLIGWFASGGDAPDYGAADQAWTSWADDNQWKSRIGAFAMLLAGFVF
Ga0105249_131194392	3300009553	Switchgrass Rhizosphere	VTPLPDVLPTRWQRLLALSGVVFAVLFLIGWFASGGDAPDYGAPDQDWTNWADDNQ
Ga0126309_103253281	3300010039	Serpentine Soil	MQPPDALPASWQRLLALSGVAFAVLFLVGWFASGGDAPDYTAGDQAWADWAKDNEWRSRIGAFAMLLAGFVFL
Ga0126309_108130452	3300010039	Serpentine Soil	MQPPDALPASWQRLLALSGVAFAILFLIGWFASGGDAPDYGAADQEWTEWADDNQWRSRIGAFSMLLAG
Ga0126311_106922931	3300010045	Serpentine Soil	MQPPDTLPPSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQDWTNWADDNQWKS
Ga0134128_126449632	3300010373	Terrestrial Soil	MTSHMSAAQSASSLPLSWQRLLELSGVVFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFAMLLA
Ga0105239_125903581	3300010375	Corn Rhizosphere	LALSGVVFAVLFLVGWFASGGDAPDYGASDEAWTNWADENQWKSRIGAFAMLLAGFV
Ga0105239_127803442	3300010375	Corn Rhizosphere	MSTGSAPLSEEVSASSLPLSWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGRARCCSRASSFCTSQG*
Ga0134123_103350661	3300010403	Terrestrial Soil	MSVDRSSDALSLSWQRLLALSGVVFGVLFVVGWFASGGDAPDYGASDQDWTNWADDNQWKSRIGAFAMLLAGFVFL
Ga0105246_108553561	3300011119	Miscanthus Rhizosphere	MSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNQ
Ga0137433_11099791	3300011440	Soil	MQPPDTLPTSRQRLLALSGVVFAVLFLIGWFASGGDTPDYGATDADWTDWADDNQWRSRV
Ga0157305_101350862	3300012891	Soil	MSIGSAPMSEDPSTNALPLSWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDEAWTNWADENQWKSRIGAFAMLLAGFVFLHFAGMIR
Ga0157283_103581891	3300012907	Soil	MLPLSGVAFAVLFLIGWFASGGDAPDYTAPDHAWATWAEDNQWRSRIGAFAMLLAGFVFL
Ga0157308_100798751	3300012910	Soil	VFAGLFLIGWFASGALTPDYGAADEDWTNWADDNQWRSRISAFS
Ga0157301_100655891	3300012911	Soil	LLALSGVAFAVLFLIGWFASGGDAPDYNAPDQDWATWAEDNQWRSRIGAFAMLVAVFVFL
Ga0157301_102512081	3300012911	Soil	MTGHASAEQSANSLPLSWQRVLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIG
Ga0164299_105110761	3300012958	Soil	MTSHMSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYCASDQAWTNWADDNQWKSRIGAFAMLLAGFVFLHFVATIRTALG
Ga0164309_102480512	3300012984	Soil	MTSYMSAEQSGNSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADD
Ga0164307_104254651	3300012987	Soil	MTSHMSAEQSGNSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTSWAS
Ga0157372_133822081	3300013307	Corn Rhizosphere	MELPDSVAPPRQRLLALSGVAFAVLFVIGWFASGGDAPDYGASDEAWTN
Ga0075310_10805511	3300014302	Natural And Restored Wetlands	MTDRSFEMSEEGPSDLPLSWQRLLALSGVAFAILFLIGWFASGGDAPDYGASDQDWTNWADDNQWESRIGAFAM
Ga0182001_105218721	3300014488	Soil	MQPPDALPSTWQRLLALSGVVFAILFLVGWFASGGDAPDYAAADQDWTEWADDNQWKSRIGAFAMLLAAFVFLHFAGTVRSVLGAVE
Ga0157376_124177751	3300014969	Miscanthus Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWK
Ga0173483_101250491	3300015077	Soil	LALSGVVFAVLFLIGWFASGGDAPDYGASDEAWTNWADENQWKSRIGAFAMLLAGFVFLHFAGMIRSVL
Ga0173483_101790891	3300015077	Soil	MTSHVSAEQTANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFA
Ga0173483_104687181	3300015077	Soil	VTTTPPHDPTDRRTNSLPGSRLLALSGVVFAILFLVGWFASGGDAPDYGASEQAWTNWGDDNQWKSRIAAFAMLLAGFVFLHFVGMI
Ga0120098_10754452	3300015170	Fossill	MPPPDTLPPSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGAADQDWTEWADDNQWKSRIGAFAMLLAGFV
Ga0132256_1021601632	3300015372	Arabidopsis Rhizosphere	MQPPDALPTATHRLLALSGVVFAVLFLIGWFASGGDAPDYGAPDQDWTNWADDNEWKSRIGAFAMLLAGFVFLHFA
Ga0132256_1031977321	3300015372	Arabidopsis Rhizosphere	VVFAVLFVIGWCASGGDAPDYGASDQAWTNWADDNQWKSRIGACAMLFAGFVFLHFAGMI
Ga0132257_1016212952	3300015373	Arabidopsis Rhizosphere	VSASAHVSTEPSPDSLPRSWRRILALSGVAFGVLFVIGWFASGGDAPDYGASDRAWIAWADDNQWRSRIGAVSMLLAGVCFLHYAGVV
Ga0132257_1044350651	3300015373	Arabidopsis Rhizosphere	MLPLSGVAFAVLFLIGWFASGGDAPDYTAPDQAWATWAEDNQWKSRIGAFAMLLAGFVFLHY
Ga0132255_1040337512	3300015374	Arabidopsis Rhizosphere	MQPPDALPTATHRLLALSGVVFAVLFLIGWFASGGDAPDYGAPDQDWTNWADDNEWKSRIGAFAMLLAGF
Ga0184634_104765531	3300018031	Groundwater Sediment	MSAGYERVSEEPPPNSLPLAWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTDWADDNQWKSRVGAFAMLLAGFVFLHFASAIR
Ga0184617_10133581	3300018066	Groundwater Sediment	MNSSTDTLPPSWQRLLALSGVVFAVLFLVGWFASGGDAPDYAAGDQEWTEWAKDNEWRSRIGAFAMLLAG
Ga0184624_102324941	3300018073	Groundwater Sediment	MSAGYERVSEEPPPNSLPLAWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTDWADDNQWKSRVGAFAMLLAGFVFLHFA
Ga0190268_103319033	3300018466	Soil	MQPPDALAPRSPRLLALSGVVFAVLFLIGWFASGGDAPDYGAPDQDWTNWADDNQWKSRI
Ga0190268_111830562	3300018466	Soil	MQPPDTLPPSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQDWTNWADDNQWKSRIGAFAMLLAGFVFLHFAGMIRSV
Ga0190270_100493371	3300018469	Soil	MQSPDARPATSRLLAVSGVVFAVLFLIGWFASGGDAPDYGAPDQDWTNWADDNQWKSRIG
Ga0190271_107997951	3300018481	Soil	MMQSPESLPTTWQRLLALSGVAFAVLFLIGWFASGGDAPDYRAADEAWTNWADDNQWKSR
Ga0190271_121684391	3300018481	Soil	MQSPEPLPTTWQRLLALSGVAFAVLFLIGWFASGGDAPDYRAADEAWTNWADDNQWKSR
Ga0190271_126472411	3300018481	Soil	MQQPDARRTTTQRLLALSGVVFAVLFLIGWFASGGDTPDYGATDQDWTEWAGDNQ
Ga0193598_10525791	3300018910	Soil	MSVSRTAEALPTSWQRVLALSGVAFGVLFVIGWFASGGDAPDYAAADQEWVDWAENNQWRSRIGAFAMLLAGF
Ga0173481_104937402	3300019356	Soil	MQSPNAHPTTTPRLLALSGIVFAVLFLVGWFANGANTPDYGAADEDWTNWAHDNQWNSRI
Ga0173481_108298231	3300019356	Soil	VLFVVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFAMLLAGFVFLHFA
Ga0247786_10893892	3300022883	Soil	LLALSGVAFAVLFLIGWFASGGDAPDYNAPDQDWATWAEDNQWRSRIGAFAMLLAGFVFLHYAGTIRTTLGRAES
Ga0247787_10375261	3300022893	Soil	MSTGSAPLSEEVSASSLPLSWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGACAMLLAGFVFLHFAGMIR
Ga0247774_11264062	3300022903	Plant Litter	VTPLPDALTPSWQRLLALSGVVFAVLFLVGWFASGGDAPDYGASDEAWTNWADENQWK
Ga0247802_10833081	3300023077	Soil	MQSANAHPTTTPRLLALSGIVFAGLFLIGWFASGALTPDYGAADEDWTNWADDNQWRSRISAFSML
Ga0247802_10944361	3300023077	Soil	MTSHMSAEQSGNSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNEWKSRIGAFAM
Ga0207707_100857774	3300025912	Corn Rhizosphere	MTSHMSAEQSGNSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNEWKS
Ga0207649_114811602	3300025920	Corn Rhizosphere	VTPLPDALTPSWQRLLALSGVVFAVLFLVGWFASGGDAPDYGASDEAWTNWADENQWKSRIGAFAMLLAG
Ga0207649_114847832	3300025920	Corn Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFAMLLAGFVFLH
Ga0207706_102893022	3300025933	Corn Rhizosphere	MSVDRSSDALSLSWQRLLALSGVVFGVLFVVGWFASGGDAPDYGASDQDWTNWADDNQWKSRIGAFAMLLAG
Ga0207686_110843672	3300025934	Miscanthus Rhizosphere	MTSHVPAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWANWADDNQWKSRIGAFAMLLAGFVFL
Ga0207709_112017672	3300025935	Miscanthus Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLAFSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKS
Ga0207704_104422411	3300025938	Miscanthus Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGAFA
Ga0207691_105834592	3300025940	Miscanthus Rhizosphere	MTSHMSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWTDDNQWKSR
Ga0208420_10051561	3300026028	Natural And Restored Wetlands	MTGHVSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQDWTSW
Ga0207648_105148281	3300026089	Miscanthus Rhizosphere	MSIGSAPMSDPSTSLPSSLQRLLALSGVVFAILFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGA
Ga0207648_117060061	3300026089	Miscanthus Rhizosphere	MTSHMSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQAWTNWADDNQWKSRI
Ga0207674_112516921	3300026116	Corn Rhizosphere	MSTGSAPLSEEVSASSLPLSWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTNWADDNQWKSRIGRARCCSRASSFCTSQG
Ga0207674_122243842	3300026116	Corn Rhizosphere	LALSGVVFAVLFLVGWFASGGDAPDFGASDEAWTNWADENQWKSRIGAFAMLLAGFVFLHFAGMIRSV
Ga0256867_103127112	3300026535	Soil	MQSPDPAHPTTTERLLALSGVVFAVLFLIGWFASGGDTPDYGAADQDWTEWADDNQWRSR
Ga0209974_101082201	3300027876	Arabidopsis Thaliana Rhizosphere	MQAPDSLPSSWQRLLALSGVVFGVLFVVGWFASGGDAPDYGATDQAWTNWADDNQWKSRIGAFAMLLAGFVF
Ga0307320_103333122	3300028771	Soil	MQPPDTLPPSWQRLLALSGVVFAVLFLVGWFASGGDAPDYGASDQDWTNWADDNQWKSRIGAFAMLLAGFVFLHFAG
Ga0307300_101454332	3300028880	Soil	MQPPNTLPRSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQDWTNWADDNQWKSR
Ga0299907_106349342	3300030006	Soil	MQPPEALPPSWQRLLALSGAVFAVLFLIGWFASGGEAPDYGASDQDWTNWADDNQWKSRIGAFAML
Ga0308201_102751822	3300031091	Soil	MTGHMSAEPSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGAVDEDWTNWADDNQWRSRISAFSMLLAGFVFLSRHPSVGPTCRVV
Ga0299914_103768341	3300031228	Soil	MQPPDTLPPSWQRLLALSGVVFAVLFLVGWFASGGDAPDYGAPDQDWTNWADDNQWKSRIGAFAMLLAGFVF
Ga0310887_103229181	3300031547	Soil	MSIGSAPMSEDPSTNALPLSWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTNWADDNQWKSRI
Ga0307407_103532072	3300031903	Rhizosphere	MQPPDALPGTWQRLLALSGVAFAVLFLIGWFASGGDAPDYGASDQAWTDWADDNQWKSRI
Ga0310900_116605792	3300031908	Soil	MSTGSAPRSEVVSVSSLPLSWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTNWADDNQWKSRVGAFAMLLAGFV
Ga0307416_1037712752	3300032002	Rhizosphere	MQPPDALPATWQRLLALSGVVFAILFLIGWFASGGDAPDYGAADQEWTEWADDNQWRSRIGAFSML
Ga0310902_107363332	3300032012	Soil	LPDAPTPSWQRLLALSGVVFAVLFLVGWFASGGDTPDYGAADEDWTNWADDNQWRSRIGAFSMLLAG
Ga0310906_103743752	3300032013	Soil	MSIGSAPLSEDPSTNALPLSWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTNWADDNQWKSRI
Ga0310890_102019273	3300032075	Soil	MSVDRSSDALSLSWQRLLALSGVVFGVLFVVGWFASGGDAPDYGASDQDWTNWADDNQWKSRIGAFA
Ga0310890_109972572	3300032075	Soil	MTPRPDPTLRTTSDQSSEVLPQSWRRMLALSGVAFAVLFVIGWFASGGDAPDYGAPDQDWTDWADDNQW
Ga0310895_101759061	3300032122	Soil	MSIGSAPMSEDPSTNALPLSWQRLLALSGVVFALLFVIGWFASGGDAPDYGASDQDWTNWADDNQWRSRIGAFSMLLAG
Ga0310895_101929752	3300032122	Soil	MSTGSAPRSEVVSVSSLPLSWQRLLALSGVVFAVLFVIGWFASGGDAPDYGASDQAWTNWADDNQWKSRI
Ga0334943_109039_2_238	3300034137	Biocrust	MTGHMSAEQSANSLPLSWQRLLALSGVAFAVLFLVGWFASGGDAPDYGASDQDWTSWASDNQWKSRIGAFAMLLAGFVF
Ga0334931_100458_439_675	3300034377	Sub-Biocrust Soil	MSTGSTPTPADRATNIPLSWQRLLALSGVAFAVLFIIGWFTNGGLTPHYNEPDQEWTNWARDNQWSGRISAFLMLLAAF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089775

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences