Metagenome Family F089770

Basic Information
Family ID	F089770
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	43 residues
Representative Sequence	WLQANMDTTSTYYTQERANKLVLAFGDRWQSECFPKSIWAW
Number of Associated Samples	38
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	13.89 %
% of genes from short scaffolds (< 2000 bps)	12.96 %
Associated GOLD sequencing projects	30
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (92.593 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (72.222 % of family members)
Environment Ontology (ENVO)	Unclassified (72.222 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (98.148 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.39% β-sheet: 0.00% Coil/Unstructured: 75.61%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02535	Zip	7.55
PF08144	CPL	4.72
PF00069	Pkinase	4.72
PF00533	BRCT	3.77
PF01351	RNase_HII	2.83
PF02213	GYF	2.83
PF09409	PUB	2.83
PF00928	Adap_comp_sub	1.89
PF05691	Raffinose_syn	1.89
PF00787	PX	1.89
PF08625	Utp13	1.89
PF01241	PSI_PSAK	1.89
PF05378	Hydant_A_N	1.89
PF00926	DHBP_synthase	0.94
PF01388	ARID	0.94
PF00782	DSPc	0.94
PF00810	ER_lumen_recept	0.94
PF07690	MFS_1	0.94
PF03946	Ribosomal_L11_N	0.94
PF04104	DNA_primase_lrg	0.94
PF03147	FDX-ACB	0.94
PF01238	PMI_typeI_C	0.94
PF00875	DNA_photolyase	0.94
PF09742	Dymeclin	0.94
PF13522	GATase_6	0.94
PF00725	3HCDH	0.94
PF00378	ECH_1	0.94
PF08519	RFC1	0.94
PF06294	CH_2	0.94
PF01398	JAB	0.94
PF02737	3HCDH_N	0.94
PF09325	Vps5	0.94
PF00957	Synaptobrevin	0.94
PF00294	PfkB	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	18.87
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	7.55
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	3.77
COG0164	Ribonuclease HII	Replication, recombination and repair [L]	2.83
COG1039	Ribonuclease HIII	Replication, recombination and repair [L]	2.83
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	1.89
COG2219	Eukaryotic-type DNA primase, large subunit	Replication, recombination and repair [L]	0.94
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	0.94
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.94
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.94
COG1482	Mannose-6-phosphate isomerase, class I	Carbohydrate transport and metabolism [G]	0.94
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0415	Deoxyribodipyrimidine photolyase	Replication, recombination and repair [L]	0.94
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.94
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.94
COG0108	3,4-dihydroxy-2-butanone 4-phosphate synthase	Coenzyme transport and metabolism [H]	0.94
COG0080	Ribosomal protein L11	Translation, ribosomal structure and biogenesis [J]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
All Organisms	root	All Organisms	7.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
cellular organisms	root	All Organisms → cellular organisms	7.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	7.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Trebouxiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Chlorellales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales	5.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Chlorellaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae	5.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Chlorella clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Chlorella	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella	1.85 %
Micractinium	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Micractinium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Micractinium conductrix	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Micractinium → Micractinium conductrix	0.93 %
unclassified Chlorella	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella → unclassified Chlorella	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.59 %
Chlorella desiccata (nom. nud.)	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella → unclassified Chlorella → Chlorella desiccata (nom. nud.)	0.93 %
Micractinium conductrix	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Micractinium → Micractinium conductrix	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009124\|Ga0118687_10182126	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella	761	Open in IMG/M
3300017952\|Ga0181583_10449588	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae	795	Open in IMG/M
3300017952\|Ga0181583_10495216	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella → unclassified Chlorella → Chlorella desiccata (nom. nud.)	748	Open in IMG/M
3300017962\|Ga0181581_10430291	All Organisms → cellular organisms → Eukaryota	825	Open in IMG/M
3300017985\|Ga0181576_10234842	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae	1187	Open in IMG/M
3300018426\|Ga0181566_10667696	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae	717	Open in IMG/M
3300020054\|Ga0181594_10300387	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Micractinium → Micractinium conductrix	732	Open in IMG/M
3300020184\|Ga0181573_10478211	Not Available	552	Open in IMG/M
3300021957\|Ga0222717_10415584	Not Available	741	Open in IMG/M
3300021959\|Ga0222716_10119916	Not Available	1753	Open in IMG/M
3300021959\|Ga0222716_10314110	Not Available	941	Open in IMG/M
3300021959\|Ga0222716_10408032	Not Available	787	Open in IMG/M
3300021961\|Ga0222714_10556826	Not Available	579	Open in IMG/M
3300021964\|Ga0222719_10077932	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	2460	Open in IMG/M
3300021964\|Ga0222719_10686971	Not Available	580	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	98.15%
Sediment	Environmental → Aquatic → Sediment	1.85%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	72.22%
Unclassified	Environmental → Aquatic → Marine → Unclassified	25.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Sediment	Environmental → Aquatic → Marine → Sediment	0.93%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	72.22%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	25.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	72.22%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	25.00%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	1.85%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009124	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017962	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017985	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020054	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly)	Environmental	Open in IMG/M
3300020056	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020168	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409BT metaG (spades assembly)	Environmental	Open in IMG/M
3300020184	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101409BT metaG (spades assembly)	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022935	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG	Environmental	Open in IMG/M
3300023081	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG	Environmental	Open in IMG/M
3300023084	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG	Environmental	Open in IMG/M
3300023087	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG	Environmental	Open in IMG/M
3300023110	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG	Environmental	Open in IMG/M
3300023115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023173	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG	Environmental	Open in IMG/M
3300023176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0118687_101821261	3300009124	Sediment	GDAEETRLYVWLKHNFDTTSNLYTHERANKLVLAFGDRWQSECFPKSIYAW*
Ga0118687_103746781	3300009124	Sediment	LRDNMDTTSGVYTQERANKLVLAFGDRWQSECFPKSIWAW*
Ga0181565_105392442	3300017818	Salt Marsh	NMDTTSDIYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181565_107624602	3300017818	Salt Marsh	MWLRNNFDTTSTMYTHERANKLVLAFGDRWQSECFPKSIYAW
Ga0181565_108592432	3300017818	Salt Marsh	SGGDAHETMLYNWLQKNFDTTNTMYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0181584_1000008042	3300017949	Salt Marsh	WLAKNMDTTSAYYTQERANKLVLAFGDRWQSECFPRSIYAW
Ga0181584_1000065919	3300017949	Salt Marsh	DETRLYFWLQANMDTTSTYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181584_100565292	3300017949	Salt Marsh	MDTTSHYYTHERANKLVLAFGDRWQSECFPKSIYAW
Ga0181584_100776601	3300017949	Salt Marsh	DETRLYFWLQANMDTTSTYYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0181584_102333541	3300017949	Salt Marsh	WLQANMDTTSNIYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0181577_100480021	3300017951	Salt Marsh	HNMDTTSDIYTQERANKLVLAFGDRWQSECFRKSIYAW
Ga0181577_102003952	3300017951	Salt Marsh	MDTTSNIYTHERANKLVLAFGDRWQSECFPKSIYAW
Ga0181577_102306931	3300017951	Salt Marsh	ETMLYNWLHQNFDTTTTMYTHERANKLVLAFGDRWQSECFPKSIYAW
Ga0181583_100950541	3300017952	Salt Marsh	NWLQQNMDTTSNIYTHERANKLVLAFGDRWQSECFPKSIYAW
Ga0181583_100996141	3300017952	Salt Marsh	PRSSGGDADETRLYFWLAKNMDTTSAYYTQERANKLVLAFGDRWQSECFPRSIYAW
Ga0181583_102052481	3300017952	Salt Marsh	LQKNFDTTNTMYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0181583_102061341	3300017952	Salt Marsh	ERRLYNWLQANMDTTSHYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181583_104495881	3300017952	Salt Marsh	SGGDADERRLYNWLQANMDTTSHIYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181583_104952162	3300017952	Salt Marsh	THGRFPRSSGGDAHETMLYNWLHQNFDTTTTMYTHERANKLVLAFGDRWQSECFPKSIYA
Ga0181571_103674332	3300017957	Salt Marsh	YNWLRHNMDTTSDIYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181571_105603962	3300017957	Salt Marsh	ANMDTTSTYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181582_100056311	3300017958	Salt Marsh	LQANMDTTSTYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181582_1000563110	3300017958	Salt Marsh	MDTTSHYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181582_101451363	3300017958	Salt Marsh	QANMDTTSHYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181582_103478352	3300017958	Salt Marsh	DAAETRLYNWLRHNMDTTSDIYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181581_104302911	3300017962	Salt Marsh	SGGDADERRLYNWLQANMDTTSTYYTHERANKLVLAFGDRWQSECFPKSIYAC
Ga0181589_100029079	3300017964	Salt Marsh	QWLSQLYTHERANKLVLAFGDRWQSECFTKSIWAW
Ga0181589_100214436	3300017964	Salt Marsh	ADETRLYFWLQANMDTTSTYYTQERANKLVMAFGDRWQSECFPKSIWAW
Ga0181589_102611531	3300017964	Salt Marsh	RLYNWLRHNMDTTSDIYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181589_105085061	3300017964	Salt Marsh	FDTTSDIYTQERANKLVLAFGDRWQSECFPKSIYAW
Ga0181589_105473521	3300017964	Salt Marsh	ANMDTTSHYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181589_105986672	3300017964	Salt Marsh	LYHWLAKNMDTTSHYYTHERANKLVLAFGDRWQSECFPKSIYAW
Ga0181587_105114571	3300017968	Salt Marsh	MDTTSHYYTHERANKLVLAFGDRWQSECFAKSIWAW
Ga0181587_108575452	3300017968	Salt Marsh	LYNWLQKNFDTTTTMYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0181576_102348421	3300017985	Salt Marsh	RSSGGDADETRLYHWLAKNMDTTSHYYTQERANKLVLAFGDRWQSECFPKSIYAW
Ga0181576_103108731	3300017985	Salt Marsh	WLQANMDTTSTYYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0181569_100732742	3300017986	Salt Marsh	MDTTSGYYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0181569_100732743	3300017986	Salt Marsh	MDTTSHYYTHERANKLVLAFGDRWQSECFTKSIWAW
Ga0181592_100688841	3300018421	Salt Marsh	RLYFWLAKNMDTTSAYYTQERANKLVLAFGDRWQSECFPRSIYAW
Ga0181591_100442761	3300018424	Salt Marsh	MDTTSDIYTQERANKLVLAFGDRWQSECFPKSIYAW
Ga0181591_101143941	3300018424	Salt Marsh	DTTSDIYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181591_104557791	3300018424	Salt Marsh	NWLRHNMDTTSDIYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181566_106676961	3300018426	Salt Marsh	RSSGGDADERRLYDWLQANMDTTSHYYTHERANKLVLAFGDRWQSECFTKSIWAW
Ga0181568_103435521	3300018428	Salt Marsh	GADERRLYYWLAKNFDTTSDIYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0181568_108092132	3300018428	Salt Marsh	YRWLRDNFDTTSTYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181594_100873371	3300020054	Salt Marsh	KNMDTTSHYYTHERANKLVLAFGDRWQSECFAKSIWAW
Ga0181594_103003872	3300020054	Salt Marsh	SRGGDADERRLYDWLQQNMDTTSNIYTHERANKLVLAFGDRWQSECFPKSIYAW
Ga0181594_103881682	3300020054	Salt Marsh	FDTTTTMYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0181574_104376712	3300020056	Salt Marsh	ANMDTTSTYYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0181574_104710541	3300020056	Salt Marsh	FWLQANMDTTSHYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181574_104917731	3300020056	Salt Marsh	ADERRLYNWLQANMDTTSHYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181588_100918861	3300020168	Salt Marsh	QANMDTTSHYYTHERANKLVLAFGDRWQSECFTKSIWAW
Ga0181588_102085102	3300020168	Salt Marsh	KNMDTTSVYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0181588_102466732	3300020168	Salt Marsh	AHETMLYNWLHQNFDTTTTMYTHERANKLVLAFGDRWQSECFPKSIYAW
Ga0181573_1000430713	3300020184	Salt Marsh	ADETRLYHWLAKNMDTTSHYYTHERANKLVLAFGDRWQSECFAKSIWAW
Ga0181573_100071239	3300020184	Salt Marsh	NFDTTTTMYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0181573_100130956	3300020184	Salt Marsh	NMDTTSTYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0181573_100538081	3300020184	Salt Marsh	NMDTTSHYYTRERANKLVLAFGDRWQSECFPKSIYAW
Ga0181573_104782112	3300020184	Salt Marsh	SGDADEVKLYKWLYDMMDTTSTIYTHERARKLVLAFGDRWQSECFPKSIWAW
Ga0222717_104155842	3300021957	Estuarine Water	KWLQANMDTTSHIYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0222717_104585571	3300021957	Estuarine Water	WLLQNMDTTSTYYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0222717_105102291	3300021957	Estuarine Water	TWLKDNMDTTSGIYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0222718_102021852	3300021958	Estuarine Water	YNWLQANMDTTSTYYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0222718_102105872	3300021958	Estuarine Water	DTTSGMYTPERANKLVLAFGDRWQSECFPKSIYAW
Ga0222716_100283941	3300021959	Estuarine Water	RDNFDTTSGMYTQERANKLVLAFGDRWQSECFTKSIYAW
Ga0222716_101004961	3300021959	Estuarine Water	YQWLRHNMDTTSTYYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0222716_101199161	3300021959	Estuarine Water	SGGDAEETRLYKWLRDNMDTTSHYYTHERANKLVLAFGGRWQSECFPKSIYAW
Ga0222716_102179501	3300021959	Estuarine Water	NMDTTSNLYTHERANKLVLAFGDRWQSECFKKSIWAW
Ga0222716_102518922	3300021959	Estuarine Water	WLRHNMDTTSNLYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0222716_102647121	3300021959	Estuarine Water	QKNMDTTSHYYTQERANKLVLAFGARWQSECFPKSIWAW
Ga0222716_103141102	3300021959	Estuarine Water	NMDTTSNYYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0222716_104080322	3300021959	Estuarine Water	NMDTTSGMYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0222714_105568261	3300021961	Estuarine Water	YNRGDADETRLYMWLRDNMDVTSHIYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0222714_106404942	3300021961	Estuarine Water	GEEHENRLYQWLRDNMDTTSNIYTPERANKLVLAFGDRWQSECFPKSIYAW
Ga0222713_107334691	3300021962	Estuarine Water	WGGDAEETRLYKWLQKNFDTTSDYYTPERANKLVLAFGGRWQSECFPKSIYAW
Ga0222713_107757432	3300021962	Estuarine Water	YVWLQQNMDTTSTYYTHERARKLVLAFGDRWQSECFKKSIWAW
Ga0222712_103591642	3300021963	Estuarine Water	ETRLYNWLQQNMGTTSHYYTQERANKLVLAFGDRWQSECFPKSIYAW
Ga0222712_104701332	3300021963	Estuarine Water	LRDNFDTTSGMYTPERANRLVLAFGDRWQSECFPKSIYAW
Ga0222712_104840841	3300021963	Estuarine Water	ETRLYKWLQANMDTTSHYYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0222719_100779324	3300021964	Estuarine Water	DADETRLYVWLQKNINTTSDTYTQERANKLVLAFGDRWQAECFPKSIYAR
Ga0222719_101047013	3300021964	Estuarine Water	KDTTSTYYTQERANKLVQAFGDRWQSECFPKSIWAW
Ga0222719_101734111	3300021964	Estuarine Water	NFDTTSTYYTQERANKLVLAFGDRWQSECFPKSIYAW
Ga0222719_103033611	3300021964	Estuarine Water	DTTSTYYTPERANKLILAFGDRWQSECFPKSIWAW
Ga0222719_104483122	3300021964	Estuarine Water	ADETRLYYWLKDNMDTTSNLYPQERANKLVLAFGDRWQSECFPKSIWAW
Ga0222719_104495202	3300021964	Estuarine Water	DTTSGMYTPERANKLVLAFGDRWQSECFKKSIYAW
Ga0222719_106869711	3300021964	Estuarine Water	LQANMDTTSTLYTHERANKLVLAFGDRWQSECFPKSIWAW
Ga0224500_102961901	3300022213	Sediment	RGAGASMDERRLYFWLRHNMDTTSDSYTHERANKLVLAFDDGWQAECFPKSICVQ
Ga0255780_100738281	3300022935	Salt Marsh	NWLRHNMDTTSDIYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0255780_101830703	3300022935	Salt Marsh	YHWLQANMDTTSTYYTHERASKLVLAFGDRWQSECFPKSIWAW
Ga0255764_100268735	3300023081	Salt Marsh	GGDADETRLYFWLAKNMDTTSVYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0255764_100961911	3300023081	Salt Marsh	GDADERRLYNWLQANMDTTSHYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0255764_101078804	3300023081	Salt Marsh	MNTTSTYYTHERANKLVLAFGDRWQSECFPKSIYAC
Ga0255764_102217012	3300023081	Salt Marsh	WLQANMDTTSTYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0255764_102613822	3300023081	Salt Marsh	AGDARLYHWLAKNMDTTSHIYTHERANKLVLAFGDRWQSECFAKSIWAW
Ga0255778_101583503	3300023084	Salt Marsh	MDTTSTYYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0255774_100306045	3300023087	Salt Marsh	RLYNWLQANMDTTSHYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0255774_101845721	3300023087	Salt Marsh	AAERKLYKWLQANMDTTSTYYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0255774_102553722	3300023087	Salt Marsh	DTTSHIYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0255743_102613601	3300023110	Salt Marsh	DETRLYFWLAKNMDTTSGYYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0255760_101084982	3300023115	Salt Marsh	NWLQANMDTTSHIYTQERANKLVLAFGDRWQSECFTKSIWAW
Ga0255760_102282371	3300023115	Salt Marsh	DTTSDIYTQERANKLVLAFGDRWQSECFPKSIYAW
Ga0255760_104215481	3300023115	Salt Marsh	GDAAETRLYNWLRHNMDTTSDIYTQERANKLVLAFGDRWQSECFPKSIWAW
Ga0255751_101867032	3300023116	Salt Marsh	GDAAETRLYNWLRHNMDTTSDIYTQERANKLVLAFGDRWQSECFRKSIYAW
Ga0255776_102696292	3300023173	Salt Marsh	TRLYTWLQANMDTTSNIYTHERANKLVLAFGDRWQSECFTKSIWAW
Ga0255772_101203511	3300023176	Salt Marsh	VVVARLYHWLQANMDTTSHIYTHERANKLVLAFGDRWQSECFTKSIWAW
Ga0255772_103828662	3300023176	Salt Marsh	FDTTTTTYTQERANKLVLAFGDRWQSECFKKSIYAW
Ga0255768_101291424	3300023180	Salt Marsh	RLYQWLRNNMNTTSTYYTHERANKLVLAFGDRWQSECFPKSIYAC
Ga0255768_102592791	3300023180	Salt Marsh	DAHETMLYNWLQKNFDTTNTMYTQERANKLVLAFGDRWQSECFKKSIYAW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089770

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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