Metagenome Family F089721

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089721
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	68 residues
Representative Sequence	MLVNLILGSVALMGGAFAGGLLLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTGSRGYDSTSDAGEDR
Number of Associated Samples	75
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.11 %
% of genes near scaffold ends (potentially truncated)	18.52 %
% of genes from short scaffolds (< 2000 bps)	75.93 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.111 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (21.296 % of family members)
Environment Ontology (ENVO)	Unclassified (20.370 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.889 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.45% β-sheet: 0.00% Coil/Unstructured: 51.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00398	RrnaAD	13.89
PF01580	FtsK_SpoIIIE	8.33
PF12728	HTH_17	1.85
PF09851	SHOCT	0.93
PF13560	HTH_31	0.93
PF00990	GGDEF	0.93
PF09509	Hypoth_Ymh	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	13.89
COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	Cell cycle control, cell division, chromosome partitioning [D]	8.33

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.11 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.11 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.11 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	61.11 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	61.11 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	56.48 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.89 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	37.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.89 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	16.67 %
unclassified Streptosporangiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales	5.56 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2.78 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.89 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	16.67 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	5.56 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.93 %
Herbidospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora	0.93 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.89 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	6.48 %
Streptosporangiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	5.56 %
Actinomadura kijaniata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura kijaniata	2.78 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.85 %
Actinomadura alba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura alba	0.93 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.93 %
Herbidospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora	0.93 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10016306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4731	Open in IMG/M
3300004152\|Ga0062386_101396453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	583	Open in IMG/M
3300005167\|Ga0066672_10609429	Not Available	707	Open in IMG/M
3300005434\|Ga0070709_10410338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	1013	Open in IMG/M
3300005435\|Ga0070714_100544494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1110	Open in IMG/M
3300005435\|Ga0070714_101655984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	625	Open in IMG/M
3300005436\|Ga0070713_100113903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2361	Open in IMG/M
3300005436\|Ga0070713_101471917	Not Available	661	Open in IMG/M
3300005437\|Ga0070710_10179175	Not Available	1325	Open in IMG/M
3300005439\|Ga0070711_100121303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	1934	Open in IMG/M
3300005445\|Ga0070708_100772574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	903	Open in IMG/M
3300005529\|Ga0070741_11118428	Not Available	669	Open in IMG/M
3300005614\|Ga0068856_101241356	Not Available	761	Open in IMG/M
3300006028\|Ga0070717_10962122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	777	Open in IMG/M
3300006028\|Ga0070717_11378315	Not Available	640	Open in IMG/M
3300006052\|Ga0075029_100305162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1017	Open in IMG/M
3300009522\|Ga0116218_1036781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2208	Open in IMG/M
3300009522\|Ga0116218_1083347	Not Available	1457	Open in IMG/M
3300009545\|Ga0105237_10993260	Not Available	846	Open in IMG/M
3300009628\|Ga0116125_1170156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300009683\|Ga0116224_10011932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	4358	Open in IMG/M
3300009698\|Ga0116216_10014041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	5041	Open in IMG/M
3300009700\|Ga0116217_10475456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	787	Open in IMG/M
3300009700\|Ga0116217_10638230	Not Available	661	Open in IMG/M
3300009700\|Ga0116217_10749046	Not Available	603	Open in IMG/M
3300009824\|Ga0116219_10041408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	2751	Open in IMG/M
3300010359\|Ga0126376_11547663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	693	Open in IMG/M
3300010373\|Ga0134128_12001023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	638	Open in IMG/M
3300010379\|Ga0136449_100354555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	2634	Open in IMG/M
3300010379\|Ga0136449_100506250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2095	Open in IMG/M
3300010379\|Ga0136449_100643580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	1794	Open in IMG/M
3300010379\|Ga0136449_101407210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1076	Open in IMG/M
3300010379\|Ga0136449_104108802	Not Available	541	Open in IMG/M
3300010379\|Ga0136449_104551194	Not Available	509	Open in IMG/M
3300012929\|Ga0137404_11599618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	604	Open in IMG/M
3300014838\|Ga0182030_10154844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	2897	Open in IMG/M
3300017821\|Ga0187812_1092081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	994	Open in IMG/M
3300017823\|Ga0187818_10112383	Not Available	1179	Open in IMG/M
3300017926\|Ga0187807_1001348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7752	Open in IMG/M
3300017926\|Ga0187807_1001407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	7637	Open in IMG/M
3300017928\|Ga0187806_1051118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	1258	Open in IMG/M
3300017928\|Ga0187806_1137159	Not Available	801	Open in IMG/M
3300017932\|Ga0187814_10020770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	2474	Open in IMG/M
3300017932\|Ga0187814_10112936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura alba	1005	Open in IMG/M
3300017933\|Ga0187801_10176339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	840	Open in IMG/M
3300017937\|Ga0187809_10260098	Not Available	630	Open in IMG/M
3300017942\|Ga0187808_10493183	Not Available	567	Open in IMG/M
3300017943\|Ga0187819_10050119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	2479	Open in IMG/M
3300017943\|Ga0187819_10365692	Not Available	832	Open in IMG/M
3300017970\|Ga0187783_10003092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12299	Open in IMG/M
3300017972\|Ga0187781_10783071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	692	Open in IMG/M
3300017975\|Ga0187782_10473847	Not Available	956	Open in IMG/M
3300017995\|Ga0187816_10176777	Not Available	926	Open in IMG/M
3300018001\|Ga0187815_10222446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	799	Open in IMG/M
3300018007\|Ga0187805_10157630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1033	Open in IMG/M
3300018007\|Ga0187805_10484657	Not Available	579	Open in IMG/M
3300018012\|Ga0187810_10105685	Not Available	1108	Open in IMG/M
3300018046\|Ga0187851_10639547	Not Available	600	Open in IMG/M
3300021171\|Ga0210405_10748327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	752	Open in IMG/M
3300021178\|Ga0210408_11057279	Not Available	626	Open in IMG/M
3300021374\|Ga0213881_10111233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1188	Open in IMG/M
3300021406\|Ga0210386_10401724	Not Available	1181	Open in IMG/M
3300021433\|Ga0210391_11466205	Not Available	524	Open in IMG/M
3300021476\|Ga0187846_10443421	Not Available	532	Open in IMG/M
3300021477\|Ga0210398_11298423	Not Available	572	Open in IMG/M
3300025906\|Ga0207699_10512407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	867	Open in IMG/M
3300025915\|Ga0207693_10015502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6115	Open in IMG/M
3300025928\|Ga0207700_10192080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1716	Open in IMG/M
3300025929\|Ga0207664_10256279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura kijaniata	1529	Open in IMG/M
3300025929\|Ga0207664_10867653	Not Available	811	Open in IMG/M
3300025929\|Ga0207664_11467335	Not Available	603	Open in IMG/M
3300026551\|Ga0209648_10008909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8677	Open in IMG/M
3300027497\|Ga0208199_1086801	Not Available	651	Open in IMG/M
3300027604\|Ga0208324_1102443	Not Available	799	Open in IMG/M
3300027905\|Ga0209415_10367665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1185	Open in IMG/M
3300027915\|Ga0209069_10733666	Not Available	583	Open in IMG/M
3300029999\|Ga0311339_10392683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1450	Open in IMG/M
3300030494\|Ga0310037_10007915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura kijaniata	5183	Open in IMG/M
3300030706\|Ga0310039_10211697	Not Available	759	Open in IMG/M
3300031234\|Ga0302325_12699184	Not Available	586	Open in IMG/M
3300031525\|Ga0302326_13177893	Not Available	555	Open in IMG/M
3300031708\|Ga0310686_103584362	Not Available	727	Open in IMG/M
3300031708\|Ga0310686_113722235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2012	Open in IMG/M
3300031708\|Ga0310686_113728831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → unclassified Streptosporangiales → Streptosporangiales bacterium	785	Open in IMG/M
3300031708\|Ga0310686_114025140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2418	Open in IMG/M
3300032160\|Ga0311301_10357546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2277	Open in IMG/M
3300032160\|Ga0311301_10389839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2142	Open in IMG/M
3300032160\|Ga0311301_10882050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1209	Open in IMG/M
3300032770\|Ga0335085_11900188	Not Available	607	Open in IMG/M
3300032805\|Ga0335078_10089918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	4452	Open in IMG/M
3300032828\|Ga0335080_10552865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1216	Open in IMG/M
3300032828\|Ga0335080_10836934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura kijaniata	948	Open in IMG/M
3300032892\|Ga0335081_10761123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1164	Open in IMG/M
3300032895\|Ga0335074_10131489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3215	Open in IMG/M
3300032895\|Ga0335074_10292372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1870	Open in IMG/M
3300032895\|Ga0335074_10922676	Not Available	787	Open in IMG/M
3300032895\|Ga0335074_11051599	Not Available	710	Open in IMG/M
3300032896\|Ga0335075_10011648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13293	Open in IMG/M
3300032896\|Ga0335075_10026873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	8379	Open in IMG/M
3300032896\|Ga0335075_10392564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1481	Open in IMG/M
3300032898\|Ga0335072_10258308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1994	Open in IMG/M
3300032898\|Ga0335072_10294159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1826	Open in IMG/M
3300032898\|Ga0335072_10600650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1107	Open in IMG/M
3300032954\|Ga0335083_10702781	Not Available	821	Open in IMG/M
3300033134\|Ga0335073_10512463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	1366	Open in IMG/M
3300033134\|Ga0335073_11934736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora	543	Open in IMG/M
3300033158\|Ga0335077_11376880	Not Available	681	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.15%
Host-Associated	Host-Associated	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.93%
Aquatic	Environmental → Aquatic	22.22%
Plants	Host-Associated → Plants	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.30%
Freshwater	Environmental → Aquatic → Freshwater	20.37%
Peat	Environmental → Terrestrial → Peat	2.78%
Sediment	Environmental → Aquatic → Sediment	1.85%
Cave	Environmental → Terrestrial → Cave	0.93%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	21.30%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.37%
Loam	Environmental → Terrestrial → Soil → Loam	14.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	20.37%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	17.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	21.30%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	17.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	17.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.78%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.78%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.93%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100163063	3300000567	Peatlands Soil	MLINLILGSVALIGTAFAGGLLVVIIGIRRGDHCKRLTGRPGSTSEAFARQLLAGSRGYDSPHDTGEGR*
Ga0062386_1013964533	3300004152	Bog Forest Soil	MMAYLILSSVAFMGGAFAGGLLVVIIGINRGDHGKRLTGRPAGNSEAFARRLLTGSRGYGSADNTGEGQ*
Ga0066672_106094292	3300005167	Soil	MMAYLILASVAFMGGASAGGLLVVIIGIRRGDHGKRLTGRPANSPEAFARRLLTGSRGYGSVGNTGEGQ*
Ga0070709_104103382	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPACLILGSVAFIGTALAGGLLLVIIGIRRGDRCKRLTDRPGGISEAFARYLLVGSRGYHSSHEAGEDR*
Ga0070714_1005444941	3300005435	Agricultural Soil	MAAYLILASVIFISGASAGILLIVIIGIHRGDHGKRLTGPAASNSETFTRRLLTGSRGYDLPDDVGEGK*
Ga0070714_1016559841	3300005435	Agricultural Soil	MLVNLILGSVALMGGAFAGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTSSRGYDSTSDAGEDH*
Ga0070713_1001139035	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLVNLILGSVALMGGAFVGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTSSRGYDSTSDAGEDQ*
Ga0070713_1014719173	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLVNLILGSVALMGGAFAGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTGSRGYDSTSDAGEDR*
Ga0070710_101791752	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MAAYLILASVIFISGASTGSLLAVIIGIHRGDHGKRLTGPTASNSEAFARRLLTGSRGYNFPDDAGEGQ*
Ga0070711_1001213032	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVAYLILASVVFISGASAGSLLVVVIGIHRGDHGKRLTGPISSDSEAFARRLLTGSRGYNFPEDAGEDQ*
Ga0070708_1007725742	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAYLILASVAFMGGAFAAGLLVVILGIRRGDHGKRLTGRPAGNSEAFARRLLTGSRGYGSAGNTGEGQ*
Ga0070741_111184281	3300005529	Surface Soil	TMAAYLILASVIFISGASAGILITVIIGIHRGDHCKRLTGPAASNSEAFARWLLAGSRGYNFPDDAGEGQ*
Ga0068856_1012413561	3300005614	Corn Rhizosphere	MMACLILASVAFMGGAFAGCLLVVISGIRRGDRGKRLTGPNVSNSEAFARRLLTGSRGYDSA
Ga0070717_109621222	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLVNLILGSVALMGGAFAGGLLLVILGIRRGDHGKRLTGRPGSNSEAFARRVLVGSRGYDSTSDAGEDQ*
Ga0070717_113783152	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLVNLILGSVALMGGAFVGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTSSRGYDSTSDAGEDH*
Ga0075029_1003051623	3300006052	Watersheds	MMTYLILASVAFMGGAFAAGLLVVILGIRRGDHGKRLTGRPAGNSEAFARRLLTGSRGYGSAGNTGEGQ*
Ga0116218_10367814	3300009522	Peatlands Soil	MPVNLILASVAFMGGAFAGVLLVVILGIRRGDHGKRLTGRPASNPESFARRLLTGSRGYGSAGNTREGQ*
Ga0116218_10833472	3300009522	Peatlands Soil	MMAYFILCSVTFIGGVFAGGLLVVITGIRRGDHGKRLTGPAASNSEAFARRLLTGSRGYGSAGNTGEGQ*
Ga0105237_109932601	3300009545	Corn Rhizosphere	MMAYLILGSVAFMGGVFAGGLLVVIIGIRRGDHGKRLTGLTASNSEAFARRLLTGSRGYDSAGNTGEGQ*
Ga0116125_11701562	3300009628	Peatland	MLLNLILGSVALIGTAFAGGLLVVIIGIRRGDHCKRLTGRPGSTSEAVARQLLAGSRGYDSPCDTGEGR*
Ga0116224_100119326	3300009683	Peatlands Soil	MLINLILGSVALIGTAFAGGLLVVIIGIRRGDHCKRLTGRPGSTSEALARQLLAGSRGYDSPHDTGEGR*
Ga0116216_100140416	3300009698	Peatlands Soil	MLINLILGSVALIGTAFAGGLLVVIIGIRRGDHCKRLTGRPGSTSEAFARQLLAGSRGYESPHDTGEGR*
Ga0116217_104754563	3300009700	Peatlands Soil	IGGVFAGGLLVVITGIRRGDHGKRLTGPAASNSEAFARRLLTGSRGYGSAGNTGEGQ*
Ga0116217_106382301	3300009700	Peatlands Soil	VPVNLILGSVTLVGGAFVVGLLMIIVGIRRGDRGKRLTGRPDSNCEAFARRLLTGSRGYELPRDQGS*
Ga0116217_107490461	3300009700	Peatlands Soil	MMAYLILSSVAFMGGAFAGGLLVVIIGINRGDHGKRLTGRPAGNSEAFARRLLTGSRGYGSADNT
Ga0116219_100414082	3300009824	Peatlands Soil	MAYLILSSVAFMGGAFAGGLLVVIIGINRGDHGKRLTGRPAGNSEAFARRLLTGSRGYGSADNAGEGQ*
Ga0126376_115476632	3300010359	Tropical Forest Soil	MAAYLILASVIFISGASAGSLLVVIIGTHRGDHGKRLTGPTASNSEAFARRLLTGSRGYDLPDDMGEGK*
Ga0134128_120010231	3300010373	Terrestrial Soil	MTMVAYLILASVIFISGASAGSLLVVIIGIRRGDHGKRLTGPAASNSEAFARRMLTGSRGYDFPDDAGEGQ*
Ga0136449_1003545551	3300010379	Peatlands Soil	MMAYLILSSVAFMGGAFAGGLLVVIIGINRGDHGKRLTGRPAGNSEAFARRLLTGSRGYGSADNAGEGQ*
Ga0136449_1005062503	3300010379	Peatlands Soil	VPVNLILGSVTLVGGAFVVGLLMIIVGIRRGDRGKRLTGRPDSNCEAFARRLLTGSRGYELPRDAGEGR*
Ga0136449_1006435804	3300010379	Peatlands Soil	MPVSVILGSVAVTGTAFAGGLLVVIIGIRRGEHFKRLTGRPGSVSEALTRRLLVGSRGHDSSHDAGDGR*
Ga0136449_1014072103	3300010379	Peatlands Soil	MLINLILGSVALMGTAFAGGLLVVIIGIRQGDHCKRLTGRPGSTSEAFARQLLAGSRGYDSPHDTGEGR*
Ga0136449_1041088022	3300010379	Peatlands Soil	VMMAYLILGSVAFMGGAYAVGLLVVIIGIRRGDHGKRLTGRPASNSEAYARRLLTGSRGYDSHGDAGEGQ*
Ga0136449_1045511941	3300010379	Peatlands Soil	GERIAMPVNLILASVAFMGGAFAGGLLVIIIGIRRGDHGKRLTGQPASNSEASARRLLTGSRGYGSAGNTREG*
Ga0137404_115996181	3300012929	Vadose Zone Soil	MMACLILASVAFTGGAFAGCLLVIIIGIRRGDHGKRLTGRPVSNSEAFARRLLTGSRGYGSADHTGEGQ*
Ga0182030_101548445	3300014838	Bog	MLINLILGSVALLGTAFAGGLLVVIIGIRRGDHCKRLTGRPGSTSEAFARQLLAGSRGYDSPRDTGEGQ*
Ga0187812_10920812	3300017821	Freshwater Sediment	VPVDLILGSVALMGAAFAVGLLMIIVGIHRGDRGKRLTGRPGSNCEAFARRLLTGSRGYELPRDAGEDR
Ga0187818_101123833	3300017823	Freshwater Sediment	VPVSLIVGSVALMGGAFAVGLLMIIVGIRRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDAGEDR
Ga0187807_10013488	3300017926	Freshwater Sediment	VPVSLIVGSVALMGGAFAVGLLMIIVGIRRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDTGEDR
Ga0187807_10014078	3300017926	Freshwater Sediment	VPVDLILGSVALMGGAFVVGLLMIIVGIHRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDAGEGR
Ga0187806_10511182	3300017928	Freshwater Sediment	MGVAFAVGLLMIIVGIRRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDTGEDR
Ga0187806_11371592	3300017928	Freshwater Sediment	MPVSVILGSIAVTGTALAGGLLVVIIGIRRGEHFKRLTGRPGSVSEALARRLLVGSRGHDSSHHTGDSR
Ga0187814_100207705	3300017932	Freshwater Sediment	VPVNLILGSVALMGAAFAVGLLMIIVGIHRGDRGKRLTGRPGSNCEAFARRLLTGSRGYELPRDAGEGR
Ga0187814_101129363	3300017932	Freshwater Sediment	MTYLILASVAFMGGAFAGGLLVVIIGIRRGDDGKRLTGRPASNSEAFARRLLTGSRGYDSVGDTGEGQ
Ga0187801_101763392	3300017933	Freshwater Sediment	MPVSVILGSVAVTGTALAGGLLVVIIGIRRGEHFKRLTGRPGRVSEALARRLLVGSRGHDSSHHAGDSR
Ga0187809_102600981	3300017937	Freshwater Sediment	RGRIAVPVDLILGSVALMGGAFVVGLLMIIVGIHRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDAGEGR
Ga0187808_104931831	3300017942	Freshwater Sediment	MPVSVILGSVAVTGTALAGGLLVVVIGIRRGEHFKRLTGRPGSVSEALARRLLVGSRGHDSSHPHGR
Ga0187819_100501192	3300017943	Freshwater Sediment	MPVSVILGSIAVTATALAGGLLVVIIGIRRGEHFKRLTGRPGSVSEALARRLLVGSRGHDSSHHTGDSR
Ga0187819_103656921	3300017943	Freshwater Sediment	VPVDLILGSVALMGGAFVVGLLMIIVGIHRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDTGEDR
Ga0187783_100030926	3300017970	Tropical Peatland	MNYYYLILASVFFIGGASAGSLLVVIIGIHRGDHGKRLTGPVVTNSEAFARRLLTGSRGYDFPSDAGEGQ
Ga0187781_107830712	3300017972	Tropical Peatland	VLIDLILGSVALVAEAFAVGLLMIVVGIHLGDRGKRLTGRPGSNCEAFARHLLTGSRGYELPRDAENSR
Ga0187782_104738473	3300017975	Tropical Peatland	VLIDLILGSVALVAEAFAVGLLMIIVGIHRGDRGKRLTGRPGSNCEAFARRLLTGSRGYELPRDEGEDR
Ga0187816_101767773	3300017995	Freshwater Sediment	MGAAFAVGLLMIIVGIHRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDAGEGR
Ga0187815_101856173	3300018001	Freshwater Sediment	GAFVVGLLIIILGIHRGDRGKRLIGPGSNCEAFARRLLTGSRGYELPRDAGEGR
Ga0187815_102224463	3300018001	Freshwater Sediment	VPVSLILGSVALMGGAFAVGLLMIIVGIRRGDRGKRLIGRPGSNCEAFARRLLTGSRGYKLPRDAGEDR
Ga0187805_101576302	3300018007	Freshwater Sediment	MPVSVILGSIAVTGTALAGGLLVVIIGIRRGEHFKRLTGRPGSVSEALARRLLVGSRGHDSSHHTG
Ga0187805_104846571	3300018007	Freshwater Sediment	LIVGSVALMGGAFAVGLLMIIVGIHRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDAGEGR
Ga0187810_101056851	3300018012	Freshwater Sediment	MPVSVILGSVAVTGAAFAGGLLVVIIGIRRGEHFKRLTGRPGSVSEALARRLLVGSRGHDSSHHAGDSR
Ga0187851_106395472	3300018046	Peatland	MAAYLILASVVFVSGASAGSLLVVIIGIHQGDHGKRLTGPAASNSESFARRLLTGSRGYDFPDDTGEGQ
Ga0210405_107483271	3300021171	Soil	VPVYLILGSVALIDGAFAAGLLTIIVGIHRGDRGKRLIGQPGSNCEALARRLLTGSRGYELPRDAGEDR
Ga0210408_110572791	3300021178	Soil	MMACLILASVAFMGGAFAGCLLVVISGIRRGDRGKRLTGPTVSNSEAFARRLLTGSRGYGSADHMGEGQ
Ga0213881_101112332	3300021374	Exposed Rock	MIASLILSSVAFMGGVFAGCLLVVIIGIRRGDHGKRLTGSAASNSEAFARRLLTGSRGYDFPDDAGEGQ
Ga0210386_104017242	3300021406	Soil	VPISLILGSVALIGGALVVGLLLMIIVGIHRGDRGKRLIGRPGSNCEAFARRLLTGSRGYELPRDAGKDR
Ga0210391_114662052	3300021433	Soil	MLVNLILGSVALMGGAFAGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTGSRGYESTSDAGEDR
Ga0187846_104434211	3300021476	Biofilm	MPVDVILGSVALMGGAFAVGLLMIIVGIRRGDRGKRLTGRPGSNCEAFARRLLTGSRGY
Ga0210398_112984231	3300021477	Soil	ALMGTAFTGGLLVIIIGIRRGDHGKRLTGLPGSTSEAFARQLLAGSRGYDSPHDRGEGE
Ga0207699_105124071	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MPACLILGSVAFIGTALAGGLLLVIIGIRRGDRCKRLTDRPGGISEAFARYLLVGSRGYHSSHEAGEDR
Ga0207693_100155024	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLVNLILGSVALMGGAFVGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTSSRGYDSTSDAGEDQ
Ga0207700_101920803	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MAAYLILASVIFISGASTGSLLAVIIGIHRGDHGKRLTGPTASNSEAFARRLLTGSRGYNFPDDAGEGQ
Ga0207664_102562794	3300025929	Agricultural Soil	MLVNLILGSVAIMGGAFVGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTSSRGYDSTSDAGEDH
Ga0207664_108676532	3300025929	Agricultural Soil	MMAYLILGSVAFMGGVFAGGLLVVIIGIRRGDHGKRLTGLTASNSEAFARRLLTGSRGYDSAGNT
Ga0207664_114673352	3300025929	Agricultural Soil	MAAYLILASVIFISGASAGILLIVIIGIHRGDHGKRLTGPAASNSETFTRRLLTGSRGYDLPDDVGEGK
Ga0209648_100089095	3300026551	Grasslands Soil	MAYLILASVAFMGGASAGGLLVVIIGIRRGDHGKRLTGQPASNSEAFARRLLTGSRGYGSASNTREGQ
Ga0208199_10868012	3300027497	Peatlands Soil	MLINLILGSVALIGTAFAGGLLVVIIGIRRGDHCKRLTGRPGSTSEAFARQLLAGSRGYDSPHDTGEGR
Ga0208324_11024431	3300027604	Peatlands Soil	MMAYFILCSVTFIGGVFAGGLLVVITGIRRGDHGKRLTGPAASNSEAFARRLLTGSRGYGSAGNTGEGQ
Ga0209415_103676651	3300027905	Peatlands Soil	MPVSVILGSVAVTGTAFTGGLLVVIIGIRRGEHFKRLTGRPGSVSEALARRLLVGSRGHDSSHHAGDSR
Ga0209069_107336661	3300027915	Watersheds	MGGAFAGGLLLVILGIRRGDHGKRLTGRPGSNSEAFARRMLVGSRGYDSTSDAGED
Ga0311339_103926834	3300029999	Palsa	MLINLILGSVALMSTAFAGGLLVVIIGIHRGDHCKRLTGRPGSTSEAFARQLLARSRGYDSPRDTGEGR
Ga0310037_100079151	3300030494	Peatlands Soil	MPVNLILASVAFMGGAFAGVLLVVILGIRRGDHGKRLTGRPASNPESFARRLLTGSRGYGSAGNTREGQ
Ga0310039_102116972	3300030706	Peatlands Soil	MMAYLILSSVAFMGGAFAGGLLVVIIGINRGDHGKRLTGRPAGNSEAFARRLLTGSRGYGSADNAGEGQ
Ga0302325_126991841	3300031234	Palsa	MLLNLILGSVALMGVALAGGLLVVIIGIRRGDHCKRLTGQPGSTSEAFARQLLAGSRGYD
Ga0302326_131778931	3300031525	Palsa	MLINLLLGAVALIGAACAGVLLLAIVGIRRCDHHKRLTGQPGSKPEAFARRLLAGTRGYGSAHDAGEGQ
Ga0310686_1035843621	3300031708	Soil	RGRIAVPVNLILGSVALMGAAFAVGLLMIIVGIHRGDRGKRLTGRPGSNCEAFARRLLTGTRGYELPRDAGEGR
Ga0310686_1137222354	3300031708	Soil	MMACLILASVALMGGAFAGCLLVVIIGIRRGDHDKRLTGQPASNSEAFARRLLTGSRGYGSASNTREGQ
Ga0310686_1137288312	3300031708	Soil	MPFSVILGSVAVTGTAFAGGLLVVIIGIRRGEHFKRLTGRPGSVSEALARRLLVGSRGHDSSYHAGDSR
Ga0310686_1140251403	3300031708	Soil	MVAYLILASVIFISGASAGILLIVIIGIHRGDHRKRLTGPAASNSEAFTRRLLTGSRGYDLPDDVGEGK
Ga0311301_103575464	3300032160	Peatlands Soil	MLINLILGSVALMGTAFAGGLLVVIIGIRQGDHCKRLTGRPGSTSEAFARQLLAGSRGYDSPHDTGEGR
Ga0311301_103898394	3300032160	Peatlands Soil	VPVNLILGSVTLVGGAFVVGLLMIIVGIRRGDRGKRLTGRPDSNCEAFARRLLTGSRGYELPRDAGEGR
Ga0311301_108820502	3300032160	Peatlands Soil	MAYLILSSVAFMGGAFAGGLLVVIIGINRGDHGKRLTGRPAGNSEAFARRLLTGSRGYGSADNAGEGQ
Ga0335085_119001881	3300032770	Soil	MVAYLVLASVIFISGASAGSLLVVIIGIRRGDHGKRLTGSTASNSETFARRLLTGSRGYDLPDDAGEGQ
Ga0335078_100899184	3300032805	Soil	MNYYYLILTSAVLIGAASAASLLVVIIGIHRGDHAKRLTGRPGSNSEALARRLLTGSRGYDFPGDAGEGQ
Ga0335080_105528651	3300032828	Soil	MSYYLILGSVAFMGVAFAGGLLVVIIGIRRGDHGKRLTGPPASNSEAFARRLLTGSRGYDSDDDAEEGQ
Ga0335080_108369343	3300032828	Soil	RITMVAYLILASVVFISGASAGSLLVVIIGIRRGDHGKRLTGPTANNSEAFARRLLTGSRGYDFPGDAGEGQ
Ga0335081_107611234	3300032892	Soil	MNCYYLILASVVFIGGASAGSLLVVIIGIHRGDHAKRLTGRPGSNSEAFARRLLTGSRGYDFPGDAGEGQ
Ga0335074_101314895	3300032895	Soil	MQVCLILGSVALIGTALAGGLLLVIIGIRRGDRCKRLTDRPGGISEALARHLLVGSRGYHSSDEAGEDR
Ga0335074_102923723	3300032895	Soil	VVPINLILGSVALTGAAFAVGLLMIIIGIRRGDRAKRLTGRPGSNCEAFARRLLTGSRGYKPPRDAGEGR
Ga0335074_109226763	3300032895	Soil	MLVNLILGSVALLGGAFAGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTGSRGYDSTSDAGEDR
Ga0335074_110515991	3300032895	Soil	MNYYYLILASAVFIGGASAGSLLVVIIGIHRGDHAKRLTGRPGSNSEAFARRLLTSSRGYDFPSDAGEGE
Ga0335075_1001164813	3300032896	Soil	MNYYTILGSVALIGGALAVGLLMVIVGIHRGDRGKRLTGRPGSNCEAFARRLLSGSRGYKLPRDAGEGR
Ga0335075_100268736	3300032896	Soil	MLVNLILGSVALMGGAFAGGLFLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTGSRGYDSTSDAGEDR
Ga0335075_103925642	3300032896	Soil	MPVSLILGSVALMGSALAGGLLVLIIGIRRADRFKRLTGRPGGISEALARHLLVGSRGYHSSDEAGEDR
Ga0335072_102583084	3300032898	Soil	MLVNLILGSVALMGGAFAGGLLLVILGIRRGDHGKRLTGRPGSNSEAFARRVLTGSRGYDSTSDAGEDR
Ga0335072_102941595	3300032898	Soil	MACLILASVAFMGGAFAGCLLVVISGIRRGDRGKRLTGPTVSTSEAFARRLLTGSRGYDSADHAGEGQ
Ga0335072_106006504	3300032898	Soil	ASVAFMGGASAGGLLVVIIGIRRGDHGKRLTGQPASNSEAFARQLLTGSRGYGSAGNTGEGQ
Ga0335083_107027813	3300032954	Soil	MMACLILASVAFMGGAFAGCLLVVISGIRRGDRGKRLTGPTVSNSEAFARRLLTGSRGYDSADHTGEGQ
Ga0335073_105124631	3300033134	Soil	RIVVPINLILGSVALTGAAFAVGLLMIIVGIRRGDRAKRLTGRPGSNCEAFARRLLTGSRGYKPPRDAGEGR
Ga0335073_119347361	3300033134	Soil	MVAYLILASVVFVSGASAGILLAVIIGIRRGDHGKRLTGPAASNSEAFARWLLTGSRGYDLPDDVGEGPVT
Ga0335077_113768801	3300033158	Soil	MNYYYLILTSAVLIGAASAASLLVVIIGIHRGDHAKRLTGRPGSNSEAFARRLLTGSRGYDFPGDAGEGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089721

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences