Metagenome / Metatranscriptome Family F089707

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089707
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	55 residues
Representative Sequence	MKNRAKKHIMTLQDVIGIVSRFARNDHETSLVVADLLNRGLVRVNTAGHFRRIVVR
Number of Associated Samples	86
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.48 %
% of genes near scaffold ends (potentially truncated)	18.52 %
% of genes from short scaffolds (< 2000 bps)	88.89 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.963 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (11.111 % of family members)
Environment Ontology (ENVO)	Unclassified (37.963 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.889 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.38% β-sheet: 9.52% Coil/Unstructured: 63.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF01592	NifU_N	45.37
PF11026	DUF2721	23.15
PF09969	DUF2203	5.56
PF00266	Aminotran_5	5.56
PF01458	SUFBD	1.85
PF08240	ADH_N	0.93
PF00483	NTP_transferase	0.93
PF00903	Glyoxalase	0.93
PF01578	Cytochrom_C_asm	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	45.37
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	1.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.44 %
Unclassified	root	N/A	30.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.44 %
Unclassified	root	N/A	30.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.96 %
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.56 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.70 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.85 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.70 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	1.85 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.70 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.85 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.70 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	1.85 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.70 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.85 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908040\|B4_c_ConsensusfromContig170132	Not Available	632	Open in IMG/M
2140918008\|ConsensusfromContig290947	Not Available	632	Open in IMG/M
3300001213\|JGIcombinedJ13530_110368325	Not Available	975	Open in IMG/M
3300004091\|Ga0062387_100648914	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300004092\|Ga0062389_101087305	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300004092\|Ga0062389_102548557	Not Available	679	Open in IMG/M
3300004092\|Ga0062389_103741013	Not Available	571	Open in IMG/M
3300005533\|Ga0070734_10585158	Not Available	635	Open in IMG/M
3300005537\|Ga0070730_10066392	All Organisms → cellular organisms → Bacteria	2556	Open in IMG/M
3300005538\|Ga0070731_10118208	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300005538\|Ga0070731_10430846	All Organisms → cellular organisms → Archaea	877	Open in IMG/M
3300009552\|Ga0116138_1035451	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300009621\|Ga0116116_1031198	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300009632\|Ga0116102_1165101	Not Available	605	Open in IMG/M
3300009639\|Ga0116122_1067396	Not Available	1189	Open in IMG/M
3300009640\|Ga0116126_1000458	All Organisms → cellular organisms → Bacteria	30600	Open in IMG/M
3300009643\|Ga0116110_1276901	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300009645\|Ga0116106_1014620	All Organisms → cellular organisms → Bacteria	2827	Open in IMG/M
3300010341\|Ga0074045_10279352	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300010379\|Ga0136449_101710391	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300010379\|Ga0136449_103868414	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300012205\|Ga0137362_10846632	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300012205\|Ga0137362_11432215	Not Available	577	Open in IMG/M
3300012359\|Ga0137385_11483633	All Organisms → cellular organisms → Archaea	542	Open in IMG/M
3300012582\|Ga0137358_10860730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	597	Open in IMG/M
3300012582\|Ga0137358_10908675	Not Available	577	Open in IMG/M
3300012922\|Ga0137394_10724686	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300012923\|Ga0137359_10177449	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
3300012923\|Ga0137359_10834204	Not Available	797	Open in IMG/M
3300014153\|Ga0181527_1182637	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300014155\|Ga0181524_10334257	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300014200\|Ga0181526_10263223	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300014490\|Ga0182010_10482246	Not Available	684	Open in IMG/M
3300014491\|Ga0182014_10132031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1439	Open in IMG/M
3300014501\|Ga0182024_10659546	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300014502\|Ga0182021_10872756	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300014502\|Ga0182021_12312970	Not Available	647	Open in IMG/M
3300014502\|Ga0182021_12707984	Not Available	596	Open in IMG/M
3300014502\|Ga0182021_13339674	Not Available	535	Open in IMG/M
3300014638\|Ga0181536_10166209	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300014839\|Ga0182027_11763072	Not Available	600	Open in IMG/M
3300015245\|Ga0137409_10439095	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300017925\|Ga0187856_1109815	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300017927\|Ga0187824_10293108	Not Available	574	Open in IMG/M
3300017938\|Ga0187854_10114556	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300017941\|Ga0187850_10099795	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300017961\|Ga0187778_10107953	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1734	Open in IMG/M
3300018019\|Ga0187874_10389322	All Organisms → cellular organisms → Archaea	563	Open in IMG/M
3300018022\|Ga0187864_10051610	All Organisms → cellular organisms → Bacteria	2305	Open in IMG/M
3300018022\|Ga0187864_10337999	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300018033\|Ga0187867_10008496	All Organisms → cellular organisms → Bacteria	7349	Open in IMG/M
3300018033\|Ga0187867_10664553	All Organisms → cellular organisms → Archaea	568	Open in IMG/M
3300018037\|Ga0187883_10067542	All Organisms → cellular organisms → Bacteria	1880	Open in IMG/M
3300018040\|Ga0187862_10562183	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300018042\|Ga0187871_10471100	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300018043\|Ga0187887_10424517	All Organisms → cellular organisms → Archaea	784	Open in IMG/M
3300018062\|Ga0187784_10713594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	802	Open in IMG/M
3300018085\|Ga0187772_10526732	Not Available	835	Open in IMG/M
3300018086\|Ga0187769_10162905	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1638	Open in IMG/M
3300018086\|Ga0187769_10572077	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	854	Open in IMG/M
3300018086\|Ga0187769_10599537	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300018086\|Ga0187769_10817070	Not Available	705	Open in IMG/M
3300019284\|Ga0187797_1008687	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300019787\|Ga0182031_1294751	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300019999\|Ga0193718_1013922	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300020583\|Ga0210401_10929762	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300021178\|Ga0210408_10701710	Not Available	797	Open in IMG/M
3300021432\|Ga0210384_11759319	Not Available	525	Open in IMG/M
3300021479\|Ga0210410_11595114	Not Available	546	Open in IMG/M
3300022711\|Ga0242674_1025220	Not Available	719	Open in IMG/M
3300022881\|Ga0224545_1035156	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300024182\|Ga0247669_1015948	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300024330\|Ga0137417_1341536	Not Available	2726	Open in IMG/M
3300027857\|Ga0209166_10089427	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1730	Open in IMG/M
3300027869\|Ga0209579_10287716	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300027869\|Ga0209579_10292623	All Organisms → cellular organisms → Archaea	877	Open in IMG/M
3300027896\|Ga0209777_10548664	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300027903\|Ga0209488_10762654	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300028293\|Ga0247662_1076963	Not Available	596	Open in IMG/M
3300028536\|Ga0137415_11099772	Not Available	608	Open in IMG/M
3300028759\|Ga0302224_10261872	Not Available	691	Open in IMG/M
3300028800\|Ga0265338_10101748	All Organisms → cellular organisms → Bacteria	2339	Open in IMG/M
3300028800\|Ga0265338_10139579	All Organisms → cellular organisms → Bacteria	1900	Open in IMG/M
3300029889\|Ga0246001_1066152	Not Available	725	Open in IMG/M
3300030007\|Ga0311338_11809904	Not Available	550	Open in IMG/M
3300031234\|Ga0302325_12417154	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031236\|Ga0302324_100052580	All Organisms → cellular organisms → Bacteria	7322	Open in IMG/M
3300031525\|Ga0302326_10713060	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300031726\|Ga0302321_101503666	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300031726\|Ga0302321_103481980	Not Available	512	Open in IMG/M
3300032143\|Ga0315292_11529441	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300032163\|Ga0315281_11898879	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300032177\|Ga0315276_11485630	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300032256\|Ga0315271_10860538	All Organisms → cellular organisms → Archaea	782	Open in IMG/M
3300032783\|Ga0335079_10695604	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300032783\|Ga0335079_12172841	Not Available	530	Open in IMG/M
3300032805\|Ga0335078_11669828	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300032892\|Ga0335081_12630942	Not Available	516	Open in IMG/M
3300032893\|Ga0335069_10000106	All Organisms → cellular organisms → Bacteria	141801	Open in IMG/M
3300032893\|Ga0335069_11041080	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300032897\|Ga0335071_11794897	Not Available	557	Open in IMG/M
3300033158\|Ga0335077_10404473	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300033402\|Ga0326728_10000024	All Organisms → cellular organisms → Bacteria	622328	Open in IMG/M
3300033402\|Ga0326728_10020511	All Organisms → cellular organisms → Bacteria	12590	Open in IMG/M
3300033402\|Ga0326728_10894035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	631	Open in IMG/M
3300033829\|Ga0334854_061335	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300033977\|Ga0314861_0000279	All Organisms → cellular organisms → Bacteria	88075	Open in IMG/M
3300034124\|Ga0370483_0178612	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.15%
Host-Associated	Host-Associated	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Aquatic	Environmental → Aquatic	31.48%
Plants	Host-Associated → Plants	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.63%
Freshwater	Environmental → Aquatic → Freshwater	30.56%
Peat	Environmental → Terrestrial → Peat	12.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%
Marine	Environmental → Aquatic → Marine	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	25.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.04%
Lake	Environmental → Aquatic → Freshwater → Lake	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.37%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	18.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	17.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.04%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.33%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.48%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.93%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.11%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.41%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.48%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.48%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.48%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	5.56%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.70%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.70%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.85%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.85%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.85%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.85%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%
Peat	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908040	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028293	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029889	Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M
3300033977	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B4_c_05888260	2124908040	Soil	MXNRIKKXLXTLXDXIGIVNRFXRNDQETSXVVADLLNRXLVRVXXGGNPRRIIVR
Bog_all_C_06560890	2140918008	Soil	MKNRIKKHLMTLQDVIGIVNRFSRNDQETSLVVADLLNRGLVRVIAGGNPRRIIVR
JGIcombinedJ13530_1103683253	3300001213	Wetland	MTLQDVVRIVAQFARNDHETAVVVADLLNRGLVRVRGNFTSRRVLVR*
Ga0062387_1006489142	3300004091	Bog Forest Soil	MKNRAKKHLMKLQDVIDVVSRFARNDHETGLVVADLINRGFVRVHTQGHGRRIVVR*
Ga0062389_1010873053	3300004092	Bog Forest Soil	MKNSAKKHIMTLQDVIGAVSRFARNDHETSAVVADLINRGLVRVPTHGYSRRLVVR*
Ga0062389_1025485571	3300004092	Bog Forest Soil	MKNRAKKHLMKLQDVIDVVSRFARNDHETGLVVADLINRGFVRVHTQGHGRRVVVR*
Ga0062389_1037410131	3300004092	Bog Forest Soil	MKNRIKKHLMTLQDVIDIVSRFSRNDHEMSLVVADLLNRGLVRVNTGGHSRRIVVH*
Ga0070734_105851581	3300005533	Surface Soil	KNRIKKHMMTLQEVIGIVSQFSRNDREMSAVVADLLNRGLVRVRADGQSRRIIVN*
Ga0070730_100663925	3300005537	Surface Soil	MKNSAKKHLMKLQDVIRIVSGFSRNDRETSLVVADLLNRGLVRIQAHGYPRRIVVR*
Ga0070731_101182084	3300005538	Surface Soil	MKNRAKKHLMRLQDVIGIVSRFSRNDLETSLVVADLLNRGLVRVQTHGHPRRIIVR*
Ga0070731_104308462	3300005538	Surface Soil	MRNRAKKHMMTLRDVVAAVAKFARNDQETSLAVADLLNRGLVRVQTGGHYRRVVVR*
Ga0116138_10354512	3300009552	Peatland	MKNRARKHLLTLQDVIDIVSRFARNDRETGVVVADLINRGFVRVHTQGHGRRIIVR*
Ga0116116_10311982	3300009621	Peatland	MKNRIKKHLMTLQDVIGIVNRFSRNDHETSLVVADLLNRGLVRVIAGGNSRRIIVR*
Ga0116102_11651011	3300009632	Peatland	MKNRARKHLMKLQDVIDVVSRFARNDHETSLVVADLINRGFVRIHTHSPGRRIIVR*
Ga0116122_10673963	3300009639	Peatland	MKNRVRKHILKLQDVIDVVSRFARNDHETGLVVADLINRGFVRVHTQDPTRRIIVR*
Ga0116126_100045832	3300009640	Peatland	MKNRDRKHLMKLQDVIDVVSRFARNDHETSLVVADLINRGFVRIHTHSPGRRIIVR*
Ga0116110_12769012	3300009643	Peatland	SRFARNDHETSLVVADLINRGFVRIHTHSPGRRIIVR*
Ga0116106_10146204	3300009645	Peatland	MKNRARKHLMKLQDIIDVVSRFARNDHETSLVVADLINRGFVRIHTHDHRRFIVR*
Ga0074045_102793522	3300010341	Bog Forest Soil	MKNRVRKHILKLQDVIDVVSRFARNDYETSLVVADLINRGFVRVHTQGSGRRIIVR*
Ga0136449_1017103912	3300010379	Peatlands Soil	MKNRVKKHLMTLQDVIGIVSRFSRNDHEMSLVVADLLNRGLVRVCTHGQPRRIVVR*
Ga0136449_1038684141	3300010379	Peatlands Soil	DVIDVVSRFARNDHETGLVVADLINRGFVRVRTQSPGRRIIVR*
Ga0137362_108466321	3300012205	Vadose Zone Soil	MKHSAKKHIMTLQDVISIVSRFARNDHETSVVVADLLNRGLVRVNAGGHSRRIVVR*
Ga0137362_114322152	3300012205	Vadose Zone Soil	MKHSAKKHIMTLQDVIGIVSRFARNDHETSAVVADLLNRGLVRVQTRGYSRRIVVR*
Ga0137385_114836331	3300012359	Vadose Zone Soil	MKHISKKHIMTLQDVVSIVSRFARNDHETSVVVADLLNRGLVRVNTGGHFRRIVVR*
Ga0137358_108607302	3300012582	Vadose Zone Soil	MKNRVKKHLMTLQDLIGTVSGFARNDHETSLVVADLLNRGLVRLRMDGHSRRIIVR*
Ga0137358_109086752	3300012582	Vadose Zone Soil	MKNRAKKHIMKLQDVISIVSRFARNDYETSLVVADLLNRGLVRVNAHGHFRRTVVR*
Ga0137394_107246861	3300012922	Vadose Zone Soil	MKNRMKKHLMTLQDLIGVVSRIARNDHETSLVVADLLNRGLVRVRSGGHSRRIIVR*
Ga0137359_101774493	3300012923	Vadose Zone Soil	MKNRVKKHVMKLQDVISIVSRFARNDHETSLVVADLLNRGLVRVNTHGQFRRIVVR*
Ga0137359_108342041	3300012923	Vadose Zone Soil	KHSAKKHIMTLQDVISIVSRFARNDHETSVVVADLLNRGLVRVNAGGHSRRIVVR*
Ga0181527_11826372	3300014153	Bog	MKNRVRKHLLRLQDVIDVVSRFARNDHETSLVVADLINRGLVRVYTQDPTRRVIVR*
Ga0181524_103342572	3300014155	Bog	MKNRVKKHLMTLQDVIGIVSRFSRNDYEMSLVVADLLNRGLVRVCTRGHSRRIIVR*
Ga0181526_102632231	3300014200	Bog	MKNRVKKHILKLQDVIDAVSRFARNDHETSLVVADLINRGFVRVHTQGQGRRIIVR*
Ga0182010_104822462	3300014490	Fen	MKNRAKKHIMTLQDVVGIVARLARNDYETSVVVADLLNRGLVRVNADGQSRRIIVR*
Ga0182014_101320311	3300014491	Bog	MKNSAKKHMMTLRDVIGIVSRFARNDHETNVVVADLINRGLVRVQTRGYSRRIVVR*
Ga0182024_106595462	3300014501	Permafrost	MKNSAKKHMMTLRDVIGIVSRFARNDHETNVVVADLINRGLVRVQTRCYSRRIVVR*
Ga0182021_108727562	3300014502	Fen	MKNSAKKHMLTLRDVIGIVSRFARNDHETSAVVADLINRGLVRVQTRGYSRRIVVR*
Ga0182021_123129701	3300014502	Fen	VQVANMKNRVKKHLMTLQDVIGIVSRLSRNDYETSLVVADLLNRGLVRVCMGGHARRIVVR*
Ga0182021_127079842	3300014502	Fen	MTLQDVIGIVNRFSRNDHETSLVVADLLNRGLVRVIAGGNPRRIIVR*
Ga0182021_133396742	3300014502	Fen	LVGGRMKNRAKKHIMTLQDVVGIVARLARNDYETSVVVADLLNRGLVRVNADGQSRRIIVR*
Ga0181536_101662093	3300014638	Bog	MKNRARKHLMRLQDVIDVVSRFARNDHETSLVVADLINRGFVRIHTHSHGRRIIVR*
Ga0182027_117630721	3300014839	Fen	MKNRAKKHIMTLQDVVGIVSRLARNDYETSLVVADLLNRGLVRVSAGGQSRRIIVR*
Ga0137409_104390951	3300015245	Vadose Zone Soil	GHMKHSAKKHIMTLQDVISIVSRFARNDHETSVVVADLLNRGLVRVNTGGHFRRIVVR*
Ga0187856_11098152	3300017925	Peatland	MKNRVRKHILKLQDVIDVVSRFARNDHETGLVVADLINRGFVRVHTQDPTRRIIVR
Ga0187824_102931081	3300017927	Freshwater Sediment	MKNRAKKHFMTLQDVIGIVSRFARNDQETNLVVADLLNRGFVRVHARGHSRR
Ga0187854_101145562	3300017938	Peatland	MKNRIKKHLMTLQDVIGIVNRFSRNDHETSLVVADLLNRGLVRVIAGGNSRRIIVR
Ga0187850_100997953	3300017941	Peatland	MKNRIKKHLMTLQDVIGIVNRFSRNDHETSLVVADLLNRGLVRVIAGGN
Ga0187778_101079534	3300017961	Tropical Peatland	MKNRAKKHLMKLQDVIDAVSRFARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0187874_103893222	3300018019	Peatland	MKNRVRKHILRLQDVIDIVSRFARNDHETGLVVADLINRGFVRVHTQDPGRRIIVR
Ga0187864_100516103	3300018022	Peatland	MKNRVKKHLMTLQDVIGIVSRFSRNDYEMSLVVADLLNRGLVRVCARGHSRRIIVR
Ga0187864_103379991	3300018022	Peatland	MKNRDRKHLMKLQDVIDVVSRFARNDHETSLVVADLINRGFVRIHTHSPGRRIIVR
Ga0187867_100084968	3300018033	Peatland	MKLQDIIDVVSRFARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0187867_106645532	3300018033	Peatland	MKNRARKHLLTLQDVIDIVSRFARNDRETGVVVADLINRGFVRVHTQGHGRRIIVR
Ga0187883_100675422	3300018037	Peatland	MKNRARKHLMKLQDIIDVVSRFARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0187862_105621831	3300018040	Peatland	MKNRVRKHILRLQDVIDIVSRFARNDRETGVVVADLINRGFVRVHTQGHGRRIIVR
Ga0187871_104711001	3300018042	Peatland	FMRLIDQRWPNMKNRARKHLMKLQDIIDVVSRFARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0187887_104245172	3300018043	Peatland	MKNRVRKHLLTLQDVIDIVSRFARNDHETGLVVADLINRGFVRVHTQDPGRRIIVR
Ga0187784_107135942	3300018062	Tropical Peatland	MKNRARKHLMKLQDIIDIVSRFARNDHETSLVVADLINRGLVRIHTHDHRRLIVR
Ga0187772_105267322	3300018085	Tropical Peatland	MKNRAKKHLMKLQDVIDIVSRLARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0187769_101629054	3300018086	Tropical Peatland	MKNRARKHWMKLQDVIDIVSRLARNDHETTLVVADLINRGFVRIYTHDHRRFIVR
Ga0187769_105720772	3300018086	Tropical Peatland	MKNRAKKHLMKLQDVIDIVSRFARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0187769_105995372	3300018086	Tropical Peatland	MKNRARKHWMKLQDVIDIVSRFARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0187769_108170701	3300018086	Tropical Peatland	RAKKHLMKLQDIIDIVSRFARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0187797_10086872	3300019284	Peatland	ARKHWMKLQDVIDVVSRFARNDHETSLVVADLINRGYVRIHTHDHRRFIVR
Ga0182031_12947513	3300019787	Bog	MKNSAKKHMMTLRDVIGIVSRFARNDHETNVVVADLINRGLVRVQTRGYSRRIVVR
Ga0193718_10139223	3300019999	Soil	MKNRAKKHIMTLQDVIGIVSRFARNDHETSLVVADLLNRGLVRVNTAGHFRRIVVR
Ga0210401_109297621	3300020583	Soil	MKHSAKKHIMTLRDVIGIVSRFARNDHETSAVVADLINRGLVRVQSRGYSRRIVVR
Ga0210408_107017102	3300021178	Soil	MKHSAKKHIMTLRDVIGIVSRFARNDHETSVVVADLINRGLVRVQTRGFSRRIVVR
Ga0210384_117593191	3300021432	Soil	MKHSAKKHIMTLRDVIGIVSRFARNDHETSAVVADLINRGLVRVQTRGYSRRIVVR
Ga0210410_115951142	3300021479	Soil	MKNSAKKHIMTLRDVIGIVSRFARNDHETSAVVADLINRGLVRVQTRGYSRRVVVR
Ga0242674_10252201	3300022711	Soil	MPAAKKHIMTLRDVIGIVSRFARNDHETGAVVADLINRGLVRVQTRGYSRRIIVR
Ga0224545_10351561	3300022881	Soil	MKNSAKKHMMTLRDVIGIVSRFARNDHETNVVVADLINRGLVRVKTRGYSRRIVVR
Ga0247669_10159482	3300024182	Soil	MKNRVKKHVMKLQDVISIVSRFARNDYETSLVVADLLNRGLVRVNTHGHFRRIVVR
Ga0137417_13415363	3300024330	Vadose Zone Soil	MKNRAKKHIMTLKDVIGIVSKFARNDHETSLVVADLLNRGLVRVNARGHFRRIIVR
Ga0209166_100894274	3300027857	Surface Soil	MKNSAKKHLMKLQDVIRIVSGFSRNDRETSLVVADLLNRGLVRIQAHGYPRRIVVR
Ga0209579_102877162	3300027869	Surface Soil	MKNRAKKHLMRLQDVIGIVSRFSRNDLETSLVVADLLNRGLVRVQTHGHPRRIIVR
Ga0209579_102926232	3300027869	Surface Soil	MRNRAKKHMMTLRDVVAAVAKFARNDQETSLAVADLLNRGLVRVQTGGHYRRVVVR
Ga0209777_105486642	3300027896	Freshwater Lake Sediment	MKNRVKRHLMTLQDVISIVSRFARNDLETSLVVADLLNRGLVRVRAGGHSRRIIVR
Ga0209488_107626542	3300027903	Vadose Zone Soil	MKHSAKKHIMTLQDVISIVSRFARNDHETSLVVADLLNRGLVRVNAHGHSR
Ga0247662_10769632	3300028293	Soil	MKNRVKKHVMKLQDVISIVSRFARNDYETSLVVADLLNRGLVRVNTHGHFRRTVVR
Ga0137415_110997721	3300028536	Vadose Zone Soil	MKHSAKKHIMTLQDVISIVSRFARNDHETSVVVADLLNRGLVRVNTGGHFRRIVVR
Ga0302224_102618721	3300028759	Palsa	MKNRIKQHLMTLQDVIGIVSRFSRNDHEVSLVVADLLNRGLVRVCTRGHARRIIVR
Ga0265338_101017484	3300028800	Rhizosphere	MKNRAKKHIMTLQDVVGIVARLARNDYETSVVVADLLNRGLVRVNADGQSRRIIVR
Ga0265338_101395793	3300028800	Rhizosphere	MKNRIKKHLMTLQDVIGIVARFSRNDHEMSLVVADLLNRGLVRVNMDGQPRRIVVR
Ga0246001_10661522	3300029889	Peat	XXXARKHLMKLQDVIDVVSRFARNDHETSLVVADLINRGFVRIHTHSPGRRIIVR
Ga0311338_118099041	3300030007	Palsa	LRRLTVQETIMKNRIKQHLMTLQDVIGIVSRFSRNDHEVSLVVADLLNRGLVRVCTRGHARRIIVR
Ga0302325_124171541	3300031234	Palsa	RWRQYMKNHAKKHLMRLQDVIDAVSRFARNDHETGLVVADLINRGFVRVHTQGHGRRIVV
Ga0302324_1000525805	3300031236	Palsa	MKNHAKKHLMRLQDVIDAVSRFARNDHETGLVVADLINRGFVRVHTQGHGRRIVVR
Ga0302326_107130602	3300031525	Palsa	MKNRAKKHLLKLQDVIDAVSRFARNDHETSLVVADLINRGFVRVHTQGHGRRIVVR
Ga0302321_1015036661	3300031726	Fen	MKNSAKKHMMTLRDVIGIVSRFARNDHETSAVVADLINRGLVRVQTRGYSRRIVVR
Ga0302321_1034819801	3300031726	Fen	QKPMTLQDVVRTVAKFARNDHETALVVADLLNRGLVRVGGSYNSRRVVVR
Ga0315292_115294411	3300032143	Sediment	RKPMTLQDVVKIVARFARNDHETALVVADLLNRGLVRVGGNFTSRRIVVR
Ga0315281_118988791	3300032163	Sediment	LQDVVRIVAKFARNDHETALVVADLLNRGLVRVGGNFTSRRIVVR
Ga0315276_114856301	3300032177	Sediment	MTLQDVVKIVAKFARNDHETALVVADLLNRGLVRVGGNFTSRRIVVR
Ga0315271_108605382	3300032256	Sediment	MTLQDVVKIVATFARNDHETALVVADLLNRGLVRVGGNFTSRRIVVR
Ga0335079_106956042	3300032783	Soil	MKNRIKKHLMTLQDVIGIVSRFSRNDHEMSLVVADLLNRGLVRVTMDGHSRRIVVR
Ga0335079_121728412	3300032783	Soil	MKNRVRKQLMRLQDVIDIVSRFARNDHETGLVVADLINRGFVRVHTQGAGRRTIVR
Ga0335078_116698282	3300032805	Soil	MKNRVRKHLMRLQDVIDVVSRFARNDHETSLVVADLINRGFVQVYSQGHGR
Ga0335081_126309421	3300032892	Soil	MKNRMRKRLMTIQDVIGIVSRFSRNDYETSLVVADLCNRGLVRVIAGGNPRRIIVH
Ga0335069_1000010651	3300032893	Soil	MRLQDVVDIVSRFARNDRETGLVVADLINRGLVRVHTQGNGRRVIVR
Ga0335069_110410801	3300032893	Soil	MKNRVRKHLMRLQDVIDVVSRFARNDHETSLVVADLINRGFVQVYTQGHGRRTVVR
Ga0335071_117948972	3300032897	Soil	MKNRVRRQLLKLQDVIDIVSRFARNDHETSLVVADLINRGFVRVHTQSHGRRIIVR
Ga0335077_104044732	3300033158	Soil	MKNRIKKHLMTLQDVISIVNRFSRNDQETSLVVADLLNRGLVRVIAGGNPRRIIVR
Ga0326728_10000024336	3300033402	Peat Soil	MKNRARKHLMKLQDVIDIVSRFARNDHETSLVVADLINRGFVRVHTHDPGRRIIVR
Ga0326728_100205115	3300033402	Peat Soil	MKNRVRKHILKLQDVIDVVSRFARNDYETSLVVADLINRGFVRVHTQGSGRRIIVR
Ga0326728_108940352	3300033402	Peat Soil	MKNRARKHLMKLQDVIDVVSRFARNDRETSLVVADLINRGFVRIHTHDHGRRIIVG
Ga0334854_061335_735_896	3300033829	Soil	MKNRAKKHLMKLQDVIDAVSRFARNDHETSLVVADLINRGFVRVHTQGHGRRIV
Ga0314861_0000279_7725_7892	3300033977	Peatland	MKNRAKKHCMKLQDIIDIVSRIARNDHETSLVVADLINRGFVRIHTHDHRRFIVR
Ga0370483_0178612_581_718	3300034124	Untreated Peat Soil	LRDVIGIVSRFARNDHETNVVVADLINRGLVRVQTRGYSRRIVVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089707

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences