Metagenome / Metatranscriptome Family F089663

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089663
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	55 residues
Representative Sequence	MALDPAVLKARIDLRVCELKALAAWTAVNWRGRAEREQPPRGLPPPPARRNEDDE
Number of Associated Samples	61
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	63.55 %
% of genes near scaffold ends (potentially truncated)	39.81 %
% of genes from short scaffolds (< 2000 bps)	82.41 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.407 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.593 % of family members)
Environment Ontology (ENVO)	Unclassified (63.889 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.481 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.76% β-sheet: 0.00% Coil/Unstructured: 60.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF12307	DUF3631	1.85
PF03401	TctC	0.93
PF01699	Na_Ca_ex	0.93
PF03118	RNA_pol_A_CTD	0.93
PF05272	VirE	0.93
PF13289	SIR2_2	0.93
PF13458	Peripla_BP_6	0.93
PF04392	ABC_sub_bind	0.93
PF01939	NucS	0.93
PF13560	HTH_31	0.93
PF01717	Meth_synt_2	0.93
PF10028	DUF2270	0.93
PF00692	dUTPase	0.93
PF02357	NusG	0.93
PF06048	DUF927	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.93
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.93
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.93
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.93
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	0.93
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	0.93
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG5519	Predicted ATPase domain of Cch-like helicases, DUF927 family	General function prediction only [R]	0.93
COG5545	Predicted P-loop ATPase and inactivated derivatives	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
All Organisms	root	All Organisms	42.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
cellular organisms	root	All Organisms → cellular organisms	42.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.15 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.11 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.48 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.93 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.93 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	5.56 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.93 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.93 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
Bradyrhizobium sp. 6(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	5.56 %
Streptomyces paucisporeus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces paucisporeus	0.93 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.93 %
Burkholderia sp. D7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. D7	0.93 %
unclassified Geobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.48 %
Bradyrhizobium sp. 6(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	5.56 %
Geobacter sp. OR-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. OR-1	0.93 %
Streptomyces paucisporeus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces paucisporeus	0.93 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.93 %
Burkholderia sp. D7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. D7	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10078539	Not Available	707	Open in IMG/M
3300004268\|Ga0066398_10062769	All Organisms → cellular organisms → Bacteria → Proteobacteria	783	Open in IMG/M
3300005363\|Ga0008090_10006338	Not Available	558	Open in IMG/M
3300005437\|Ga0070710_10966968	Not Available	618	Open in IMG/M
3300005764\|Ga0066903_100018762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7237	Open in IMG/M
3300005764\|Ga0066903_100235375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces paucisporeus	2800	Open in IMG/M
3300005764\|Ga0066903_100735513	Not Available	1748	Open in IMG/M
3300005764\|Ga0066903_100975520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1545	Open in IMG/M
3300005764\|Ga0066903_101285025	Not Available	1366	Open in IMG/M
3300005764\|Ga0066903_101368676	Not Available	1327	Open in IMG/M
3300005764\|Ga0066903_101393615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. D7	1316	Open in IMG/M
3300005764\|Ga0066903_103392448	Not Available	860	Open in IMG/M
3300005764\|Ga0066903_103846756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	806	Open in IMG/M
3300005764\|Ga0066903_103923249	Not Available	798	Open in IMG/M
3300005764\|Ga0066903_104463998	Not Available	747	Open in IMG/M
3300005764\|Ga0066903_105129767	Not Available	694	Open in IMG/M
3300005764\|Ga0066903_107836477	Not Available	549	Open in IMG/M
3300005764\|Ga0066903_109093532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300010046\|Ga0126384_10433614	Not Available	1118	Open in IMG/M
3300010361\|Ga0126378_10207992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	2036	Open in IMG/M
3300010361\|Ga0126378_11230344	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	846	Open in IMG/M
3300010366\|Ga0126379_11181151	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300010366\|Ga0126379_13390211	Not Available	534	Open in IMG/M
3300010376\|Ga0126381_104973411	Not Available	510	Open in IMG/M
3300010398\|Ga0126383_10222903	Not Available	1829	Open in IMG/M
3300010398\|Ga0126383_10242377	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. OR-1	1763	Open in IMG/M
3300010398\|Ga0126383_10697364	Not Available	1093	Open in IMG/M
3300010398\|Ga0126383_11001920	Not Available	924	Open in IMG/M
3300010398\|Ga0126383_11273024	Not Available	825	Open in IMG/M
3300010398\|Ga0126383_11751630	Not Available	710	Open in IMG/M
3300010398\|Ga0126383_13071970	Not Available	545	Open in IMG/M
3300010398\|Ga0126383_13171921	Not Available	537	Open in IMG/M
3300010398\|Ga0126383_13316145	Not Available	526	Open in IMG/M
3300012971\|Ga0126369_12561632	Not Available	595	Open in IMG/M
3300016270\|Ga0182036_11525987	Not Available	561	Open in IMG/M
3300016294\|Ga0182041_10455679	Not Available	1100	Open in IMG/M
3300016319\|Ga0182033_10020197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4037	Open in IMG/M
3300016319\|Ga0182033_11084345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	715	Open in IMG/M
3300016319\|Ga0182033_11690568	Not Available	573	Open in IMG/M
3300016319\|Ga0182033_11849014	Not Available	548	Open in IMG/M
3300016341\|Ga0182035_10051739	Not Available	2791	Open in IMG/M
3300016341\|Ga0182035_10105474	All Organisms → cellular organisms → Bacteria	2075	Open in IMG/M
3300016422\|Ga0182039_12268943	Not Available	501	Open in IMG/M
3300016445\|Ga0182038_11348769	Not Available	638	Open in IMG/M
3300021560\|Ga0126371_10182856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2182	Open in IMG/M
3300021560\|Ga0126371_10287406	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300021560\|Ga0126371_10625579	Not Available	1225	Open in IMG/M
3300021560\|Ga0126371_11621046	Not Available	773	Open in IMG/M
3300021560\|Ga0126371_13338671	Not Available	542	Open in IMG/M
3300031543\|Ga0318516_10085452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1766	Open in IMG/M
3300031543\|Ga0318516_10176487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	1230	Open in IMG/M
3300031544\|Ga0318534_10687993	Not Available	578	Open in IMG/M
3300031544\|Ga0318534_10868462	Not Available	506	Open in IMG/M
3300031545\|Ga0318541_10001611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8457	Open in IMG/M
3300031545\|Ga0318541_10005526	All Organisms → cellular organisms → Bacteria	5323	Open in IMG/M
3300031546\|Ga0318538_10018153	Not Available	3084	Open in IMG/M
3300031561\|Ga0318528_10354375	Not Available	788	Open in IMG/M
3300031572\|Ga0318515_10037808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	2386	Open in IMG/M
3300031572\|Ga0318515_10050559	All Organisms → cellular organisms → Bacteria	2091	Open in IMG/M
3300031573\|Ga0310915_10005571	All Organisms → cellular organisms → Bacteria	7001	Open in IMG/M
3300031573\|Ga0310915_10726922	Not Available	700	Open in IMG/M
3300031573\|Ga0310915_10959311	Not Available	598	Open in IMG/M
3300031679\|Ga0318561_10224644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300031682\|Ga0318560_10367694	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300031682\|Ga0318560_10384553	Not Available	759	Open in IMG/M
3300031713\|Ga0318496_10023352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3080	Open in IMG/M
3300031713\|Ga0318496_10055552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	2059	Open in IMG/M
3300031719\|Ga0306917_10470769	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300031744\|Ga0306918_11031517	Not Available	638	Open in IMG/M
3300031744\|Ga0306918_11349391	Not Available	547	Open in IMG/M
3300031748\|Ga0318492_10348522	All Organisms → cellular organisms → Bacteria → Proteobacteria	775	Open in IMG/M
3300031751\|Ga0318494_10029041	All Organisms → cellular organisms → Bacteria	2813	Open in IMG/M
3300031769\|Ga0318526_10120032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	1060	Open in IMG/M
3300031770\|Ga0318521_10885428	Not Available	545	Open in IMG/M
3300031771\|Ga0318546_10696985	Not Available	714	Open in IMG/M
3300031779\|Ga0318566_10246741	Not Available	885	Open in IMG/M
3300031794\|Ga0318503_10045881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1321	Open in IMG/M
3300031796\|Ga0318576_10276264	Not Available	793	Open in IMG/M
3300031819\|Ga0318568_10710440	Not Available	625	Open in IMG/M
3300031819\|Ga0318568_10784020	Not Available	591	Open in IMG/M
3300031860\|Ga0318495_10502256	Not Available	529	Open in IMG/M
3300031879\|Ga0306919_10120343	Not Available	1878	Open in IMG/M
3300031880\|Ga0318544_10149048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	896	Open in IMG/M
3300031890\|Ga0306925_10360638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1560	Open in IMG/M
3300031910\|Ga0306923_10322121	Not Available	1764	Open in IMG/M
3300031910\|Ga0306923_10593735	Not Available	1244	Open in IMG/M
3300031910\|Ga0306923_11504142	Not Available	704	Open in IMG/M
3300031912\|Ga0306921_12711686	Not Available	509	Open in IMG/M
3300031912\|Ga0306921_12744443	Not Available	505	Open in IMG/M
3300031945\|Ga0310913_11058984	Not Available	567	Open in IMG/M
3300031954\|Ga0306926_10326175	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300031954\|Ga0306926_11456031	Not Available	792	Open in IMG/M
3300032010\|Ga0318569_10457901	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	595	Open in IMG/M
3300032043\|Ga0318556_10033606	All Organisms → cellular organisms → Bacteria	2403	Open in IMG/M
3300032043\|Ga0318556_10277898	Not Available	875	Open in IMG/M
3300032052\|Ga0318506_10048911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1700	Open in IMG/M
3300032054\|Ga0318570_10097759	All Organisms → cellular organisms → Bacteria → Proteobacteria	1278	Open in IMG/M
3300032059\|Ga0318533_10052579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2714	Open in IMG/M
3300032065\|Ga0318513_10272103	Not Available	822	Open in IMG/M
3300032066\|Ga0318514_10232261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969	Open in IMG/M
3300032068\|Ga0318553_10110821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	1404	Open in IMG/M
3300032089\|Ga0318525_10521918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300032089\|Ga0318525_10662030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 6(2017)	532	Open in IMG/M
3300032090\|Ga0318518_10133078	Not Available	1257	Open in IMG/M
3300032094\|Ga0318540_10392519	Not Available	670	Open in IMG/M
3300032261\|Ga0306920_101493977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	965	Open in IMG/M
3300033290\|Ga0318519_10354325	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.19%
Loam	Environmental → Terrestrial → Soil → Loam	14.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.89%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.30%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100785392	3300000793	Forest Soil	MALDPAVLKARIDLRVHRLKLLAAWTAVNWRGRADSEQSLRGRVEQEQLLRXLPPPPGRRDEDNER*
Ga0066398_100627692	3300004268	Tropical Forest Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPARRNEDDE*
Ga0008090_100063381	3300005363	Tropical Rainforest Soil	MALDPAVLKARIDLRIYQLKRLAAWTVANCRGRAEREQLLRGLPPLPAHRNEDDE*
Ga0070710_109669681	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MALDPAVLKARIDLRVCELKAFAAWTAANWRGRAEPERLSRGLPPPPAEEAALGTIIATREQV*
Ga0066903_1000187625	3300005764	Tropical Forest Soil	MALDPAVLKARIDRRVCEPRLLAAWAAVNFRRRVEREGLLPRGLLPPPLVRRNEDDE*
Ga0066903_1002353756	3300005764	Tropical Forest Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLP
Ga0066903_1007355133	3300005764	Tropical Forest Soil	MALDPAILKARIDRRVCELRLLAAWTAVNFRRRVEREQQLRDLPPPPARRNENDE*
Ga0066903_1009755203	3300005764	Tropical Forest Soil	MALDPATLKARIDWRVCELKLLAAETAVSCARERERPMRDLPPPSRRRNEDDA*
Ga0066903_1012850252	3300005764	Tropical Forest Soil	MALDPVALKARIDLRVCQLKQLAAWTAVNWRGRVEREQPPRGLPPPPARRNEDDE*
Ga0066903_1013686761	3300005764	Tropical Forest Soil	MALDPAVLKARIEWRISELKVLAAQMAVNWGRACERERQTRGLPSPPARRDEDE*
Ga0066903_1013936153	3300005764	Tropical Forest Soil	MALDPAVLKARIDRRVCELKLLVAWTAVNWRGRAEQQLRGRAEQEQLLRGLPPPPARRNEDDE*
Ga0066903_1033924481	3300005764	Tropical Forest Soil	GMALDPAVLKARIDLRICQLKWLAAWTVANCRERAEREQLLRGLPPLPTHRNEDDDK*
Ga0066903_1038467563	3300005764	Tropical Forest Soil	MALDPAVLKARLNLRICQLKWLAAWTVVNCRERVEREQLLRGLPLLPARRNRDEDDDE*
Ga0066903_1039232491	3300005764	Tropical Forest Soil	MALDPAVLKARIDLRVCELRVLAAETAVSWARPRERERLMRDLPPPPAHRNEDNE*
Ga0066903_1044639981	3300005764	Tropical Forest Soil	AAGMALDPATLEARIHLRVCELKALAAWTAVNCRGHMAREQLLRGLPRLPARRDRDEDDDE*
Ga0066903_1051297673	3300005764	Tropical Forest Soil	MALDPAVLKARIHLRVCELKALAAWTVVNCRGRVEREQLLRGLPPLPVRRNDNDDE*
Ga0066903_1078364772	3300005764	Tropical Forest Soil	MALDPTVLKARIHLRVCELKALAAWTVVNCRGRVERDQLLRGLPPLPARRNSDEDDE*
Ga0066903_1090935322	3300005764	Tropical Forest Soil	MMLDPAVLKARIDLRICQLKQLAAWTAVNCRGRVEREQLLRGLPPLPARRNED
Ga0126384_104336142	3300010046	Tropical Forest Soil	MALDPVVLKARIEWRVCQLKLLAAWVVVNCCGRAEREQLLRGLPPPPARRNEDDE*
Ga0126378_102079922	3300010361	Tropical Forest Soil	MALDSAVLKARIDRRVCEFRLLAAWAAMNFRRRVEREQLLRDLPPPFARRNEDDER*
Ga0126378_112303442	3300010361	Tropical Forest Soil	MALDPAVLKARIDLRIYQLKALAAWTVANCRGRVEREQLLRGLPPLPARRNEDDE*
Ga0126379_111811511	3300010366	Tropical Forest Soil	MALDPAVLKARIDLRVCQLKWLAAWTAVNWRGRAEPEQLPRGLPPPPTRRNEDDE*
Ga0126379_133902112	3300010366	Tropical Forest Soil	MALDPAVLKVRIDRRVCELKLLAAWTVANCRGRVEGEQLTRGLPPLPAYRNEDDE*
Ga0126381_1049734111	3300010376	Tropical Forest Soil	MALDPAVLKARIDRRVCELKLLAARTAVNWRGRAEQQLRGRAEQEQLLRGLPPPPARRNEDDE*
Ga0126383_102229033	3300010398	Tropical Forest Soil	MALDPAILKARIDLRICQLKRLAAWTAVNCRGRVEWEQLLRGLPRLPARRDEDDE*
Ga0126383_102423774	3300010398	Tropical Forest Soil	MALDPVVLKVRIDLRICQLKQLAAWTAVNWRGRAEREQLPRGLPPPPARRNEDDE*
Ga0126383_106973641	3300010398	Tropical Forest Soil	MALDPATLEARIHLRVCELKALAAWTAVNCRGHMAREQLLRGLPRLPARRD
Ga0126383_110019201	3300010398	Tropical Forest Soil	MALDPAVLKARIELRVCQLKKQLAAWTALNWRMHAEREQPRRGLPPPPGRRDEDDE*
Ga0126383_112730244	3300010398	Tropical Forest Soil	MALDPAVLKVRIDLRVYQLKQLAAWTTVNWRGRPEREQPPRDLPPPPARRDDDDE*
Ga0126383_117516303	3300010398	Tropical Forest Soil	MALDPAVLKARIEWRISELKVLAAQTAVNWGRACERERQTRGLPSPPARRDEDE*
Ga0126383_130719702	3300010398	Tropical Forest Soil	LDPAVLKARIDLRVCELRLLAAWITLNWRGRAEPEQPPRGRPPPSARGNEDDDE*
Ga0126383_131719212	3300010398	Tropical Forest Soil	MALDPAVLKAHIDLRVCQLKQLAAWTVANCRGRVEREQLLRGLPPLPARRDEDDE*
Ga0126383_133161452	3300010398	Tropical Forest Soil	MALDPAVLKVRIDRRVCELKLLVAWTVANCRGRVEGEQLTRGLPPLPAYRNEDDE*
Ga0126369_125616322	3300012971	Tropical Forest Soil	MALDPAVLKARIDWRVCELKLLAAWITLNWRGRAEREQLPRGLPPPPARRNEDDAG*
Ga0182036_115259872	3300016270	Soil	MALDPAVLKARIDLRVAQLKQLAAWTVVNWRARAEREQLPRGLPPPPARRNAD
Ga0182041_104556791	3300016294	Soil	DPVVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNRDEDDDE
Ga0182033_100201974	3300016319	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHSLPLLPAHRNEDDE
Ga0182033_110843451	3300016319	Soil	MALDPAVLKARIDLRVCELKALAAWTAVNWRGRAEREQPPRGLPPPPARRNEDDE
Ga0182033_116905681	3300016319	Soil	RRAACGIGCGMALDPAVLKARIDLRVCQLKELAAWTAVNCRGRVEREQLLRGLPPLPARRDEE
Ga0182033_118490142	3300016319	Soil	MALDPAVLKARIDLRVCELKLLAAWITLKWRGRAEREQPPRGRVDEEQLLRGLPPPPARRNED
Ga0182035_100517393	3300016341	Soil	MALDPAVLKARIDLRVCELKPLAAWTVVNCRGRVEREQVLRGLPPLPARRDEDDE
Ga0182035_101054744	3300016341	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPA
Ga0182039_122689431	3300016422	Soil	MALDPAVLKARIDLRVCQLKELAVWTALNWRGHAERKQPPRDPPPARRNED
Ga0182038_113487691	3300016445	Soil	MALDPAILKARIDSRVYQLKLLAAWTVANCRGRAEREQLLRGLPPLPARRNDDDD
Ga0126371_101828562	3300021560	Tropical Forest Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPARRNEDDE
Ga0126371_102874062	3300021560	Tropical Forest Soil	MALDPAVLKARIDRRVCELKLLVAWTAVNWRGRAEQQLRGRAEQEQLLRGLPPPPARRNEDDE
Ga0126371_106255792	3300021560	Tropical Forest Soil	MALDPAILKARIDRRVCELRLLAAWTAVNFRRRVEREQQLRDLPPPPARRNENDE
Ga0126371_116210461	3300021560	Tropical Forest Soil	MALDPAILKARIDLRVYQLKQLAAWTAVNWRGRAEREQLPRGLPPPPARRNEDDE
Ga0126371_133386713	3300021560	Tropical Forest Soil	MALDPAVLKARIHLRVCELKALAAWTVVNCRGRVEREQLLRGLSPLPARRDRDEDDDE
Ga0318516_100854523	3300031543	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAHRNEDDE
Ga0318516_101764873	3300031543	Soil	MALDPAVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318534_106879931	3300031544	Soil	MALDLAVLKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPARRNEDDE
Ga0318534_108684622	3300031544	Soil	MALDPAILKARIDSRVYQLKLLAAWTVANCRGRAEREQLLRGLPPLPARRNDDDDEG
Ga0318541_100016115	3300031545	Soil	MALDPAILKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAHRNEDDE
Ga0318541_100055262	3300031545	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQVISGRQPSSWPPWSR
Ga0318538_100181533	3300031546	Soil	MALDPAVLKARIDRQVYQLKQLAAWTVVNCRGRAEREQLLRGLPPLPARRDEDDE
Ga0318528_103543753	3300031561	Soil	MARDPAVLKVRIDLRVHQLKPLAAWTAVNWRGRVEREQPPRGLPPPPARRNEDDE
Ga0318515_100378084	3300031572	Soil	MALDSAVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318515_100505591	3300031572	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQVISGRQ
Ga0310915_100055711	3300031573	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLSARR
Ga0310915_107269222	3300031573	Soil	MALDPAVLKARIDVRICELKVLAAWTAVNWRGRAEPELPCGPSPPPARRNEDE
Ga0310915_109593111	3300031573	Soil	MALDPAVLKARIDLRVCQLKELAVWTALNWRGHAERKQPPRDPPPARRNEDDE
Ga0318561_102246441	3300031679	Soil	ALDPAVLKARIDVRICELKVLAAWTAVNWRGRAEPELPCGPSPPPARRNEDE
Ga0318560_103676942	3300031682	Soil	MALDLAVLKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPAR
Ga0318560_103845532	3300031682	Soil	VFKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPARRNEDDE
Ga0318496_100233521	3300031713	Soil	ALGMALDTAVLKARIDLRVCELRVLAAETAVSWARPRERERLMRDLPPPPAHRNEDNE
Ga0318496_100555523	3300031713	Soil	AVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0306917_104707692	3300031719	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPHA
Ga0318500_101021422	3300031724	Soil	MALDPAVLKARIDLRVCELRVLAAETAVSWARPRERERLMRDLPPPPA
Ga0306918_110315171	3300031744	Soil	MALDPAVLKARINLRICQLKWLAAWTVVNCRERVEREQLLRGLPLLPARRNRDE
Ga0306918_113493911	3300031744	Soil	MARDPAVLKVRIDLRVHQLKPLAAWTAVNWRGRVEREQPPRGLPPPPARRNE
Ga0318492_103485222	3300031748	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPARRNEDDE
Ga0318494_100290414	3300031751	Soil	MALDPAVLKARIDRQVYQLKQLAAWTVVNCRGRAEREQLLRGLPPLPARRDED
Ga0318526_101200321	3300031769	Soil	LKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318521_108854281	3300031770	Soil	VLKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPARRNEDDE
Ga0318546_106969853	3300031771	Soil	MARDPAVLKVRIDLRVHQLKPLAAWTAVNWRGRVEREQQPRGLPPPARRNEDDE
Ga0318566_102467412	3300031779	Soil	VLKARIDRQVYQLKQLAAWTVVNCRGRAEREQLLRGLPPLPARRDEDDE
Ga0318503_100458814	3300031794	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLRGLPPLPARRNDDDDEG
Ga0318576_102762641	3300031796	Soil	MARDPAVLKVRIDLRVHQLKPLAAWTAVNWRGSVEREQPPRGLPPPPARRNEDDE
Ga0318568_107104401	3300031819	Soil	RIDSRVYQLKLLAAWTVANCRGRAEREQLLRGLPPLPARRNDDDDEG
Ga0318568_107840201	3300031819	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAHRN
Ga0318495_105022561	3300031860	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQVI
Ga0306919_101203432	3300031879	Soil	MALDPAVLKARIDLRVCELRVLAAETAVSWARPRERERLMRDLPPPPAHRNEDNE
Ga0318544_101490481	3300031880	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAH
Ga0306925_103606381	3300031890	Soil	MALDPAVLKARIDVRICELKVLAAWSAVNWRGRAEPELPCGPSPPPARRNEDE
Ga0306923_103221214	3300031910	Soil	MALDPAVLKARIDRQVYQLKQLAAWTVVNCRGRAEREQLLRGLPPLP
Ga0306923_105937353	3300031910	Soil	MALDPAVLKARIDLRVCELKALAAWTVVNCRGRVEREQLLRGLPPLPARRDEE
Ga0306923_115041422	3300031910	Soil	MALDPAVLKARINLRICQLKWLAAWTVVNCRERVEREQLLRGLPLLPARRNRDEDDDE
Ga0306921_127116861	3300031912	Soil	MALDPAVLKARIDLRVCELKLLAAWITLNWRGRAEREQPPRGRVDEEQLLRGLPPPPARRNEDDE
Ga0306921_127444431	3300031912	Soil	MALDPVVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNRDEDDDE
Ga0310913_110589842	3300031945	Soil	MAFDPAVLKARIDLRVAQLKQLAAWTAVNCRGCVEREQLLRGLPPLPARRDRDEDDDE
Ga0306926_103261751	3300031954	Soil	MALDPAVLKARIDLRVCQLKELAVLTVLNCRGRAEREQLLRGLPPLPAR
Ga0306926_114560312	3300031954	Soil	MALDPAILKARIDLRVCQLKQLAAWTALNWRVHAEREQPPRGVPPPPARRNEDDE
Ga0318569_104579012	3300032010	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPPPARCNEDDE
Ga0318556_100336064	3300032043	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPA
Ga0318556_102778981	3300032043	Soil	KVRIDLRVCELKALAAWTALNWRGHAEQEQPPRGLPPPPARRNEDDE
Ga0318506_100489114	3300032052	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPAHRDEDDE
Ga0318570_100977593	3300032054	Soil	MALDPAVLKARIDLRVCELKLLAAWVAVNWRGRAEREQQPRGLPPPARRNEDDE
Ga0318533_100525795	3300032059	Soil	MALDPAVLKARISLRVCQLKELAAWTAVNWHGRAEREQPPQPPGRRDEDDE
Ga0318513_102721031	3300032065	Soil	LKVRIDLRVCELKALAAWTALNWRGHAEREQPPRGLPPPPARRNEDDE
Ga0318514_102322611	3300032066	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQVISGRQPSSWPPWSM
Ga0318553_101108212	3300032068	Soil	GMALDPAVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318525_105219184	3300032089	Soil	MALDPAVLKARIDLRIYQLKLLAAWTVASCRGRAEREQLLHGLPLLPA
Ga0318525_106620302	3300032089	Soil	LDPAVLKARIDLRICQLKRLAAWTVANCRGRVEREQLLRGLPPLPVRRDEDDDE
Ga0318518_101330784	3300032090	Soil	MTLDPAVLKARIDLRVYQLKWLAAWTVANCRERAEREQLLRGLPPLPARRNENDDQV
Ga0318540_103925191	3300032094	Soil	GMALDPAILKARIDSRVYQLKLLAAWTVANCRGRAEREQLLRGLPPLPARRNDDDDEG
Ga0306920_1014939772	3300032261	Soil	MAFDPAVLKVRIDSRVYQLKLLAAWTVTNCRGRAEREQLLRGLPPLPVRRNEDDE
Ga0318519_103543252	3300033290	Soil	MALDPAVLKARIDLRVAQLKQLAAWTTVNWRGRAEREQQPRGLPPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089663

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences