Metagenome / Metatranscriptome Family F089546

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F089546
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	107 residues
Representative Sequence	LMGIAGLLILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFTKRHTPFPDSPREVG
Number of Associated Samples	89
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.67 %
% of genes near scaffold ends (potentially truncated)	85.32 %
% of genes from short scaffolds (< 2000 bps)	96.33 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (54.128 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.688 % of family members)
Environment Ontology (ENVO)	Unclassified (32.110 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.615 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.16% β-sheet: 0.00% Coil/Unstructured: 39.84%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00903	Glyoxalase	4.59
PF02517	Rce1-like	2.75
PF02148	zf-UBP	1.83
PF00072	Response_reg	0.92
PF08044	DUF1707	0.92
PF12831	FAD_oxidored	0.92
PF07992	Pyr_redox_2	0.92
PF02358	Trehalose_PPase	0.92
PF12697	Abhydrolase_6	0.92
PF01145	Band_7	0.92
PF08592	Anthrone_oxy	0.92
PF04203	Sortase	0.92
PF00069	Pkinase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.67
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	2.75
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	2.75
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	1.83
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.92
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.13 %
Unclassified	root	N/A	45.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.13 %
Unclassified	root	N/A	45.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.13 %
Unclassified	root	N/A	45.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41.28 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.36 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	17.43 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3.67 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	17.43 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	2.75 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	1.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	11.01 %
Raineyella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Raineyella	2.75 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	4.59 %
Raineyella fluvialis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Raineyella → Raineyella fluvialis	2.75 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	1.83 %
unclassified Geodermatophilus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus	1.83 %
Geodermatophilus siccatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus siccatus	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	4.59 %
Raineyella fluvialis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Raineyella → Raineyella fluvialis	2.75 %
Geodermatophilus sp. DSM 45219	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp. DSM 45219	1.83 %
unclassified Myxococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus	1.83 %
Geodermatophilus siccatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus siccatus	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.87 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	4.59 %
Raineyella fluvialis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Raineyella → Raineyella fluvialis	2.75 %
Myxococcus sp. AB036A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. AB036A	1.83 %
Geodermatophilus sp. DSM 45219	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp. DSM 45219	1.83 %
Geodermatophilus siccatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus siccatus	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10563087	All Organisms → cellular organisms → Bacteria	1930	Open in IMG/M
3300001431\|F14TB_100271365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300001686\|C688J18823_11038221	Not Available	520	Open in IMG/M
3300005339\|Ga0070660_101447877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	584	Open in IMG/M
3300005441\|Ga0070700_100225563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1330	Open in IMG/M
3300005455\|Ga0070663_100465609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1044	Open in IMG/M
3300005457\|Ga0070662_100995200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	718	Open in IMG/M
3300005616\|Ga0068852_100409703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1335	Open in IMG/M
3300005843\|Ga0068860_102810081	Not Available	505	Open in IMG/M
3300006580\|Ga0074049_12534190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	684	Open in IMG/M
3300006581\|Ga0074048_13373468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	971	Open in IMG/M
3300006844\|Ga0075428_102544053	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300006852\|Ga0075433_10680472	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300006852\|Ga0075433_11001638	Not Available	728	Open in IMG/M
3300009098\|Ga0105245_11839069	Not Available	659	Open in IMG/M
3300009147\|Ga0114129_12696264	Not Available	592	Open in IMG/M
3300009162\|Ga0075423_12466719	Not Available	567	Open in IMG/M
3300009553\|Ga0105249_10152355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2227	Open in IMG/M
3300009840\|Ga0126313_10706789	Not Available	817	Open in IMG/M
3300009840\|Ga0126313_11141746	Not Available	641	Open in IMG/M
3300009840\|Ga0126313_11198221	Not Available	626	Open in IMG/M
3300010036\|Ga0126305_11187570	Not Available	527	Open in IMG/M
3300010039\|Ga0126309_10765207	Not Available	627	Open in IMG/M
3300010041\|Ga0126312_10350922	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300010041\|Ga0126312_10683789	Not Available	740	Open in IMG/M
3300010041\|Ga0126312_10895297	Not Available	646	Open in IMG/M
3300010041\|Ga0126312_11227776	Not Available	553	Open in IMG/M
3300010042\|Ga0126314_10433535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	949	Open in IMG/M
3300010042\|Ga0126314_11462280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	514	Open in IMG/M
3300010042\|Ga0126314_11478605	Not Available	511	Open in IMG/M
3300010045\|Ga0126311_11764048	Not Available	524	Open in IMG/M
3300010373\|Ga0134128_11743529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	685	Open in IMG/M
3300010375\|Ga0105239_10553321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1310	Open in IMG/M
3300012473\|Ga0157340_1007093	Not Available	720	Open in IMG/M
3300012483\|Ga0157337_1033227	Not Available	538	Open in IMG/M
3300012486\|Ga0157331_1007829	Not Available	726	Open in IMG/M
3300012487\|Ga0157321_1000936	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300012491\|Ga0157329_1002396	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300012502\|Ga0157347_1005971	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300012505\|Ga0157339_1025971	Not Available	656	Open in IMG/M
3300012906\|Ga0157295_10023619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1258	Open in IMG/M
3300012937\|Ga0162653_100006445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1292	Open in IMG/M
3300012939\|Ga0162650_100043415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	722	Open in IMG/M
3300012941\|Ga0162652_100019213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	939	Open in IMG/M
3300013102\|Ga0157371_10817734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703	Open in IMG/M
3300013307\|Ga0157372_12352768	Not Available	612	Open in IMG/M
3300013308\|Ga0157375_12228815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	653	Open in IMG/M
3300015371\|Ga0132258_12231610	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300015373\|Ga0132257_100658366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1298	Open in IMG/M
3300015373\|Ga0132257_101331705	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. AB036A	912	Open in IMG/M
3300015374\|Ga0132255_101723591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	951	Open in IMG/M
3300015374\|Ga0132255_105517495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535	Open in IMG/M
3300018027\|Ga0184605_10130013	Not Available	1125	Open in IMG/M
3300018028\|Ga0184608_10514265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300018051\|Ga0184620_10102739	Not Available	883	Open in IMG/M
3300018054\|Ga0184621_10114016	Not Available	963	Open in IMG/M
3300018082\|Ga0184639_10062234	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300018466\|Ga0190268_10146724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1197	Open in IMG/M
3300018466\|Ga0190268_11940485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus siccatus	538	Open in IMG/M
3300019767\|Ga0190267_10422921	Not Available	754	Open in IMG/M
3300019767\|Ga0190267_10942233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp. DSM 45219	597	Open in IMG/M
3300019767\|Ga0190267_11086685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp. DSM 45219	573	Open in IMG/M
3300019876\|Ga0193703_1017979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1081	Open in IMG/M
3300022756\|Ga0222622_10050897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2339	Open in IMG/M
3300022901\|Ga0247788_1097383	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300023266\|Ga0247789_1008703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1570	Open in IMG/M
3300025901\|Ga0207688_10524882	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300025914\|Ga0207671_10740229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	781	Open in IMG/M
3300025919\|Ga0207657_11452030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	514	Open in IMG/M
3300025927\|Ga0207687_10036858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	3333	Open in IMG/M
3300025930\|Ga0207701_11466559	Not Available	554	Open in IMG/M
3300025933\|Ga0207706_11394944	Not Available	575	Open in IMG/M
3300028381\|Ga0268264_11895370	Not Available	606	Open in IMG/M
3300028707\|Ga0307291_1012626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1855	Open in IMG/M
3300028718\|Ga0307307_10076140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1005	Open in IMG/M
3300028719\|Ga0307301_10264679	Not Available	562	Open in IMG/M
3300028755\|Ga0307316_10065166	Not Available	1239	Open in IMG/M
3300028784\|Ga0307282_10347234	Not Available	717	Open in IMG/M
3300028796\|Ga0307287_10124767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	975	Open in IMG/M
3300028810\|Ga0307294_10429334	Not Available	501	Open in IMG/M
3300028828\|Ga0307312_10745928	Not Available	649	Open in IMG/M
3300028875\|Ga0307289_10286703	Not Available	678	Open in IMG/M
3300028875\|Ga0307289_10310467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	649	Open in IMG/M
3300028878\|Ga0307278_10050866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1877	Open in IMG/M
3300028878\|Ga0307278_10056168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1779	Open in IMG/M
3300028880\|Ga0307300_10074009	Not Available	996	Open in IMG/M
3300028880\|Ga0307300_10197617	Not Available	650	Open in IMG/M
3300028881\|Ga0307277_10569632	Not Available	508	Open in IMG/M
3300028884\|Ga0307308_10270767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	814	Open in IMG/M
3300028885\|Ga0307304_10180051	Not Available	895	Open in IMG/M
3300028885\|Ga0307304_10580083	Not Available	518	Open in IMG/M
3300031093\|Ga0308197_10096067	Not Available	868	Open in IMG/M
3300031094\|Ga0308199_1189321	Not Available	512	Open in IMG/M
3300031731\|Ga0307405_12069717	Not Available	510	Open in IMG/M
3300031824\|Ga0307413_11205818	Not Available	658	Open in IMG/M
3300031852\|Ga0307410_10099953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Raineyella → Raineyella fluvialis	2077	Open in IMG/M
3300031901\|Ga0307406_12022522	Not Available	515	Open in IMG/M
3300031903\|Ga0307407_10488541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Raineyella → Raineyella fluvialis	900	Open in IMG/M
3300031903\|Ga0307407_10513023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300031911\|Ga0307412_11867183	Not Available	554	Open in IMG/M
3300031938\|Ga0308175_100916228	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. AB036A	965	Open in IMG/M
3300031995\|Ga0307409_101760725	Not Available	648	Open in IMG/M
3300032004\|Ga0307414_10574139	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300032004\|Ga0307414_11941936	Not Available	549	Open in IMG/M
3300032005\|Ga0307411_11221257	Not Available	682	Open in IMG/M
3300032126\|Ga0307415_100376701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Raineyella → Raineyella fluvialis	1203	Open in IMG/M
3300032126\|Ga0307415_101280374	Not Available	694	Open in IMG/M
3300032205\|Ga0307472_102103556	Not Available	568	Open in IMG/M
3300034147\|Ga0364925_0112088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	974	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.80%
Host-Associated	Host-Associated	42.20%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.29%
Plants	Host-Associated → Plants	42.20%
Aquatic	Environmental → Aquatic	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.84%
Sediment	Environmental → Aquatic → Sediment	5.50%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.75%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.59%
Loam	Environmental → Terrestrial → Soil → Loam	2.75%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.75%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.59%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.69%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	11.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	11.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	4.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.59%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_105630871	3300000891	Soil	AVLTALPFAGVHMPLLLLDDHVSVLSVLTGVAGLLILGIAVRLLMGVTLRAASDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHIPLPYSGRSGPWIDQPLPSGSEKKQKRPQG*
F14TB_1002713651	3300001431	Soil	GGNGVGRFLPTRDDQVSALSVLIGIARLLILGVVVRLLIGVMMRAALDSVLAVGVLHQIFDASNNNGALVDSLLDGADAGDMTKLAAVVLTVLVAAWLLWRRPGAFAKRRMPPRDSSPQIG*
C688J18823_110382212	3300001686	Soil	VHVPLLLLDNQVSALSVLRGIAGLLILGIVIRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVILTVLIAAWLLWRRPGIFAKRHIPLHDSPPEVG*
Ga0070660_1014478771	3300005339	Corn Rhizosphere	SALSVLKGIAGLVILGIVVRLLMGTTMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAAILTALIAAWLLWRRPGSFAKRRVPSPFQGTNFRAGE*
Ga0070700_1002255631	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	IVVRLLMGTTMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAAILTALIAAWLLWRRPGSFAKRRVPSPFQGTNFRAGE*
Ga0070663_1004656092	3300005455	Corn Rhizosphere	PFAGVHVPLLLLDDHVSALSVLKGIAGLVILGIVVRLLMGTTMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAAILTALIAAWLLWRRPGSFAKRRVPSPFQGTNFRAGE*
Ga0070662_1009952001	3300005457	Corn Rhizosphere	MGVTMRAALDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQLAAVILTVLVAAWLLWRRPGAFAKRHTPPPVSPREVG*
Ga0068852_1004097031	3300005616	Corn Rhizosphere	GIVIRLLMGVTMRAALDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQLAAVILTVLVAAWLLWRRPGAFAKRHTPPPVSPREVG*
Ga0068860_1028100811	3300005843	Switchgrass Rhizosphere	RLLMGVTMRAALDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQLAAVILTVLVAAWLLWRRPGAFAKRHTPPPVSPREVG*
Ga0074049_125341901	3300006580	Soil	DQSVGGNGVGWFLPNPLGGPLQLRRGRRFDGTAVAGLHVPLLLLDDHVSARSVLMGVAGLLILGIVVRPLMGVLMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGADAGNMTQLAAAVLTVLIAA*
Ga0074048_133734683	3300006581	Soil	IGIAGLLILGIVVRLLMGVMMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGADAGNMTQLAAAVLTVLIAAWLLWRRPGAFAKRHIPLRDSHPEVA*
Ga0075428_1025440532	3300006844	Populus Rhizosphere	ILGIVVRLLMGVMMRAALDSVLAVGILHQIFDASNNNGALVDSLLDGADAGDMTQLAAVILTVLIAGWLLWRRPGAFAKRQMPLPDSPPAVG*
Ga0075433_106804722	3300006852	Populus Rhizosphere	RLLMGVMLRAALDSVLAVGVMHQIFDASNNNGGLVDSVLDGADAGNMTQLAAAILTILVAAWLLWRRPGAFATRHTPLPDSAGEVRSP*
Ga0075433_110016382	3300006852	Populus Rhizosphere	LKGIAGLLILGIVIRLLTGVMMRAALDRVLAVGILHQIFDASDNNGGLADSLLNGADAGNMTQLAAVVLTVLIAAWLLWRRPGVFAKRQIPLPDSVGQVR*
Ga0105245_118390692	3300009098	Miscanthus Rhizosphere	AIRLLMGVTMRAALDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQLAAVILTVLVAAWLLWRRPGAFAKRHTPPPVSPREVG*
Ga0114129_126962641	3300009147	Populus Rhizosphere	LDDQVSALSILKGVAGLLILGIVVRLLMGVMLRAALDSVLAVGVLHQIFDASNNNGGLVDSVLDGADAGNMTQLAAAILTILVAAWLLWRRPGAFATRHTPLPDSAGEVRSP*
Ga0075423_124667192	3300009162	Populus Rhizosphere	VILGIVVRLLMGVMMRAASDSVLAVGILHQIFDASDNNGALVDSLLDGDDAGNMTQLAAVVLTVLIAAWLLWRRPGAFAKRQIPLPDSLGQVRQP*
Ga0105249_101523553	3300009553	Switchgrass Rhizosphere	MGVTMRAALDSVLAVGILHQIFDASNNDGALVDSLLDGADAGNMTQLAAVILTVLVAAWLLWRRPGAFAKRHTPPPVSPREVG*
Ga0126313_107067892	3300009840	Serpentine Soil	LPFAGVHVPLLLLDDQLSARSVLRGVAGLLILGIVIRLLMGVMLRAAVDSVLAVGILHQIFDASNNNGAVVDSLLDGADAGNMTQFAAVMLTVLVAAWLLWRRPGAFAKRQIPLPDSRPEVG*
Ga0126313_111417462	3300009840	Serpentine Soil	VIRLLMGVMLRAALDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQFAVAILTVLIAAWLLWRRPGAFAKRQIPLPDTPREVG*
Ga0126313_111982211	3300009840	Serpentine Soil	GVHVPLLLLDDQVSALSILKGIAGLLILGIVIRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRQIPPQDSPPEVG*
Ga0126305_111875702	3300010036	Serpentine Soil	LIGIAGLLILGVVVRPLMGVRMRAALDSVLAVGVLHQIFDASNNNGALVDSRLDGVDAGNMTQLAAAVLMVLIAAWLLWRRPGAFAKRHIPLRHSAGRVRYP*
Ga0126309_107652071	3300010039	Serpentine Soil	GIVIRLLMGVMMRAALDSVLAVGVLHQIFDASNNNSALVDSVLEGADGGNRTQLAAAILTVLIAAWLLWRHPAAFAKRQIPAS*
Ga0126312_103509221	3300010041	Serpentine Soil	AGVHVPLLLLDDQVSALSVLRGIAGLLILGIVIRLLMGVILRATLDSVLAVGILHQIFDASNNNGALVDSLLEGADAGNMSQVAAAILTVLIAAWLLWRRPGAFAKRQIPLPDTPREVG*
Ga0126312_106837892	3300010041	Serpentine Soil	LILGIVIRLLMGVMLRAASDSVLAVGILHQIFDASNNNGALVDSVLEGPDAGDMTQFAAAILTVLIAAWLLWRRPGAFAKRQIPLPDSAGEVG*
Ga0126312_108952972	3300010041	Serpentine Soil	LTALPFAGVHIPLLLLDDQVSALSVLKGIAGLLILGIVIRLLMGVMLRAAVDSVLAVGVLHQIFDASNNNGALVDSILEGGDAGNMTQFAAAILTVLIAAWLLWRRPGAFAKRQIPLPDSPREVG*
Ga0126312_112277762	3300010041	Serpentine Soil	LTALPFAGVHVPLLLLDDQVSALSILTGIAGLLILGIVIRLLMGVMLRAAVDSVLAVGILHQIFDASNNNGAVVDSLLDGADAGNMTQFAAAILTVLIAAWLLWRHPGAFAKRQIPLPDSPREIG*
Ga0126314_104335352	3300010042	Serpentine Soil	LGIVIRLLMGVTMRAASDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFGKRHIPLPDSAHEVG*
Ga0126314_114622801	3300010042	Serpentine Soil	VVRLLMGITMRGAADSVLAAGVLHQIFYACNNNGALIDSLLDGVDASNMTQLATVVLTILIAAWLLWRRPGAFAKRQISV*
Ga0126314_114786052	3300010042	Serpentine Soil	PLLLLDDHVTPLSVLTGIAGLLILGIAIRLLMGAMMRAALDSVLAVGVLHQIFHASNNNGALVDSVLDGADAGNMTQLAAVVLTVLIAAWLLWRRPGIFAKRHVPLRESRPEVR*
Ga0126311_117640482	3300010045	Serpentine Soil	LAALPGVHVPLLFLDDQVSPLSVLRGIAGLLILGLVIRLLMGVTLRAASDSVLAVGLLHQIFDASNNNGALVDSLLDGADAGNMTQIAAAVLTVLIAAWLLWRHPGAFTKRHTPPPVSSREVG*
Ga0134128_117435291	3300010373	Terrestrial Soil	MGVTMRAALDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQLAAAVLTVLIAAWLLWRRPGAFAKRHTPPPVSPREVG*
Ga0105239_105533212	3300010375	Corn Rhizosphere	LLILGIVVRLLMGVMMRAASDSVLAVGILHQIFDANNNNGGRVDSLLAGADAGNMTQLAAAVLTVLIAAWLLWRRPGASVERPIPLPDSPLARLGKILESSAL*
Ga0157340_10070932	3300012473	Arabidopsis Rhizosphere	ILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSVLDGVDAGNMTQLAAAVLTVLVAAWLLWRRPGAFAKRHTPLPDSAGEVRSP*
Ga0157337_10332271	3300012483	Arabidopsis Rhizosphere	IVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGVVDSLLDGVDAGNMTQLAAAVLTVLVAAWLLWRRPGAFATRHTPLPDSAGEVRSP*
Ga0157331_10078292	3300012486	Soil	VPLLLLDDHVSVLSVLKGIAGLVILGVVVRLLMGVTMRAALDSVLAVGILHQIFDASNNNGGLVDSLLGGVDAGNMTQLAAVILTVLIAAWLLWRRPGAFAKRQVPPPDSRRQIG*
Ga0157321_10009361	3300012487	Arabidopsis Rhizosphere	GIAGLVILGVVVRLLMGVTMRAALDSVLAVGILHQIFDASNNNGGLVDSVLDGVDAGNMTQLAAAVLTVLVAAWLLWRRPGAFATRHTPLPDSAGEVRSP*
Ga0157329_10023962	3300012491	Arabidopsis Rhizosphere	GIAGLVILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSVLDGVDAGNMTQLAAAVLTVLVAAWLLWRRPGSFDKRHTPLPDSAGEVRSP*
Ga0157347_10059713	3300012502	Arabidopsis Rhizosphere	SVVIGIAGLVILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSVLDGVDAGNMTQLAAAVLTVLVAAWLLWRRPGAFATRHTPLPDSAGEVRSP*
Ga0157339_10259712	3300012505	Arabidopsis Rhizosphere	IGLAGLLILGVVVRLLMGVTMRGAADSVLAVGVLHQIFDASNNNGALVDSLLDGIDAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRQIRLPDSPSAVG*
Ga0157295_100236191	3300012906	Soil	PFAGVHMPLLLLDDHVSVPSVLTGVAGLLILGIAVRLLMGVTLRAASDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHIPLPYSGRSGPWIDQPLPSGSEKKQKRPQG*
Ga0162653_1000064453	3300012937	Soil	AGLLILGIVVRLLMGVMMRAALDSVLAVGILHQIFDASNNNGALVDSVLDGADAGNMTQLAAAILTILIAAWLLWRRPGAFAKRHVPLPELPPAADP*
Ga0162650_1000434152	3300012939	Soil	VHVPLLLLDDQVSVLSVLTGIAGLLILGIVIRLLMGVTLRAASDSVLAVGVLHQIFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHTPLPDSPPEVG*
Ga0162652_1000192131	3300012941	Soil	DQVSVLSVLTGIAGLLILGIVVRLLMGMTLRAASDSVLAVGVLHQIFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHTPPPDSSAEVR*
Ga0157371_108177341	3300013102	Corn Rhizosphere	AGLVILGIVVRLLMGTTMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAAILTALIAAWLLWRRPGSFAKRRVPSPFQGTNFRAGE*
Ga0157372_123527681	3300013307	Corn Rhizosphere	GVHVPLLLLDDHVTPLSVLTGIAGLVILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSVLDGADAGNMTQLAAAILTILVAAWLLWRRPGAFAARHTPLPDSAGEVRSP
Ga0157375_122288151	3300013308	Miscanthus Rhizosphere	LLLGVTLRGAADSVLAVGVLHQIFDAGNNQGGLVDSLLDDASADVMAEAATVVLTLLIAVFLWKRRPGAFAKRQTPDPPRPDTSPT*
Ga0132258_122316103	3300015371	Arabidopsis Rhizosphere	LLDDQVSPLKVLIGVAGLLILGIVVRLLMGVMMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGADAGNMTQLAAVVLTVLIAAWLLWRHPGAFAKRHTPFRASPPEVG*
Ga0132257_1006583661	3300015373	Arabidopsis Rhizosphere	IAGLLILGFVLRLLMGVTLRAALDSVLAVGVLHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAVILTILIAAWLLWRRPGAFAKRQTLRAAIRSRIE*
Ga0132257_1013317052	3300015373	Arabidopsis Rhizosphere	TALPFAGVHAPLLLLDDQVSARSVLLGIAGLLILGIVVRLLMGVTMRGAADSVLAVGVLHQIFDASNNNGALIDSLLNGADAGDMTQLAAVVLTILIAAWLLWRRPGAFAKRRSSP*
Ga0132255_1017235912	3300015374	Arabidopsis Rhizosphere	GVHVPLLLLEDHVTPLSLLIGIAGLLILGFVLRLLMGVMLRAALDSVLAVGILHQIFDASNNNGGLVDSLMDGVDAGNMTQLATVILTILISAWLLWRRPGAFAKRHIPHEDPLREIG*
Ga0132255_1055174952	3300015374	Arabidopsis Rhizosphere	GLLILGFVLRLLMGVMLRAALDSVLAVGVLHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAVILTILIAAWLLWRRPGAFAKRQTLRAAIRSRIE*
Ga0184605_101300131	3300018027	Groundwater Sediment	LGIVVRLLMGMTLRAASDSVLAVGVLHQIFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHTPLPDSSAEVR
Ga0184608_105142652	3300018028	Groundwater Sediment	AGVHVPLLLLDDHVTPLSVLTGIAGLWILGIVIRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHTPLPDSSAEVR
Ga0184620_101027392	3300018051	Groundwater Sediment	LLLLDDQVSALSVLLSIAGLLILGIVVRLLIGVMMRAASDSVLAVGVLHQIFDASNNNGGLVDSVLDGADAGNMTQLAAAVLTVLIAAWLLWRRPGAFAKRYVPLRDSPPEGG
Ga0184621_101140162	3300018054	Groundwater Sediment	LAGLLILGIVVRLLMGVMMRAAADSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGDMTQLAAAVLAALVAAWLRWRRPGVFAKRHIPLRDSPPAVG
Ga0184639_100622341	3300018082	Groundwater Sediment	LMGLAGLLILGIVVRLLMGVMMRAAADSVLAVGVLHQIFDASNNNGALVDSVVDGADAGNMTQLAAVVLTVLIAAWLLWRHPGAFAKRQIPLPDSPREVG
Ga0190268_101467241	3300018466	Soil	VLTALPFAGVHVPLLLLDEQVSALSILMGIAGLLILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGNMTQLAAAVLTVLVAAWLLWRRRRGVFAKRQIPLPDSLVRFV
Ga0190268_119404851	3300018466	Soil	SALSILMGVAGLLILGVAVRPLMGVMMRAALDSVLAVGVLHQIFDASNNNGALVDSVLDGVDADNMTQLAAVVLTVLIAAWLLWRHPGAFAKRQIPLPDSPREVG
Ga0190267_104229212	3300019767	Soil	GGPLQLRCGCCFDDTAIRRCAPPLLLLDKQVSALSILIGVAGLLILGVAVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGVVDSLLDGADTGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRQAPIPDSPRGVG
Ga0190267_109422331	3300019767	Soil	MGDMLRATCDSVLAVGILHQIFDASNNNGALVDSLLDGADPGNMTVLAAAVLTVLVAAWLLWRRPGVFAKRQTPLPDSPGQVG
Ga0190267_110866851	3300019767	Soil	VLKGIGGLLILGFAVRLLLGVTLRGAADSVLAVGVLHQIFDASNNQGGLVDSLLDDASADVMAEAATVVLTLLIAVFLWKRRPGAFAKRQTPHPPRPGTSPT
Ga0193703_10179792	3300019876	Soil	LLILGIVVRLLMGVMMRAAADSVLAVGVLHQIFDANNNGGLVDSLLDGADAGDMTQLAAAVLAALVAAWLRWRRPGVFAKRHIPLRDSPPEVG
Ga0222622_100508971	3300022756	Groundwater Sediment	AALPFASVHVPLLFLDDQVSALSVLMGLAGLLILGIVVRLLMGVMMRAAADSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGDMTQLAAAVLTALVAAWLRWRRPGVFAKRHVQLRDSPPEVG
Ga0247788_10973832	3300022901	Soil	HMPLLLLDDHVSVLSVLTGVAGLLILGIAVRLLMGVTLRAASDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHIPLPYSGRSGPWIDQPLPSGSEKKQKRPQG
Ga0247789_10087034	3300023266	Soil	AGVHMPLLLLDDHVSVLSVLTGVAGLLILGIAVRLLMGVTLRAASDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHIPLPYSGRSGPWIDQPLPSGSEKKQKRPQG
Ga0207688_105248822	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	LLILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSVLDGADAGNMTQLAAAILTALIAAWLLWRRPGSFAKRRVPSPFQGTNFRAGE
Ga0207671_107402291	3300025914	Corn Rhizosphere	MGVTMRAALDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQLAAVILTVLVAAWLLWRRPGAFAKRHTPPPVSPREVG
Ga0207657_114520301	3300025919	Corn Rhizosphere	DHHASALSVLKGIAGLVILGIVVRLLMGTTMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAAILTALIAAWLLWRRPGSFAKRRVPSPFQGTNFRAGE
Ga0207687_100368583	3300025927	Miscanthus Rhizosphere	VSALSVLKGIAGLVILGIVVRLLMGTTMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAAILTALIAAWLLWRRPGSFAKRRVPSPFQGTNFRAGE
Ga0207701_114665591	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKYTTRLKMGIASLVAGLLILGIVVRLLMGVMMRGALDSVFAVGILHQIFDASNNNGALVDSLLNGADAGNMTQLAAVILTVLVAAWLLWRRPGAFAKRHTPPPVSPREVG
Ga0207706_113949443	3300025933	Corn Rhizosphere	MAGLLILGIVVRLLMGVMMRAASDSVLAVGILHQIFDANNNNGGRVDSLLAGADAGNMTQLAAAVLTVLIAAWLLWRRPGASVERPIPLPDSPLARLGKILES
Ga0268264_118953702	3300028381	Switchgrass Rhizosphere	LGIVVRLLMGTTMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGVDAGNMTQLAAAILTALIAAWLLWRRPGSFAKRRVPSPFQGTNFRAGE
Ga0307291_10126261	3300028707	Soil	VLTGIAGLLILGIVVRLLMGMTLRAASDSVLAVGVLHQIFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHTPLPDSSAEVQ
Ga0307307_100761403	3300028718	Soil	VRLLMGLTLRAASDSVLAVGVLHQTFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHTPLPDSSAEVR
Ga0307301_102646791	3300028719	Soil	GVHVPLLLLDDQVSAFSVLIGIAGLLILGIVVRLLMGVMMRAALDSVLAVGILHQIFDASNNNGGLVDSLLDGADAGNMTQLAAVVLTVLIAAWLLWRRSSVFAKRHIPLPDSFREVG
Ga0307316_100651662	3300028755	Soil	SVLIGIAGLLILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGNMTQLAAAILTVLVAAWLLWRRRGVFAKRHIPLRESPREVG
Ga0307282_103472341	3300028784	Soil	LMGIAGLLILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFTKRHTPFPDSPREVG
Ga0307287_101247671	3300028796	Soil	SWGFVRLLMGVTLSAASDSVLAVGVLHQIFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHTPLPDSSAEVQ
Ga0307294_104293341	3300028810	Soil	VRLLIGVMMRAASDSVLAVGVLHQIFDASNNNGGLVDSVLDGADAGNMTQLAAAVLTVLIAAWLLWRRPGAFAKRYVPLRDSPPEGG
Ga0307312_107459282	3300028828	Soil	FAGVRVPLLLLDDQVSARSVLMGIAGLLILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFTKRHTPFPDSPREVG
Ga0307289_102867031	3300028875	Soil	LTALPFAGVHVPLLLLDNQVSPRSVLIGIAGLLILGIVLRLLMGVMLRAASDSVLAVGVLHQIFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLLAAWLLWRRPGIFAKRHVPLLESRPEVR
Ga0307289_103104671	3300028875	Soil	RLLMGVIMRAALDSVLAVGILHQIFDASNNNGALVDSVLDGADAGNMTQLAAAILTILIAAWLLWRRPGAFAKRHVPLPELPPEADP
Ga0307278_100508662	3300028878	Soil	MALPFAGVHVPLLLLDDQVSALSVLIGIAGLLILGIVVRLLMCVMMRAALDSVLAVGVLHQIFDASNNNGAVVDSVLDGADAGNMTQLAAVLTVLVAAWLLWRRPGVFAKRCIPLPDSPPEVG
Ga0307278_100561683	3300028878	Soil	LEARFNFVLAAFLTALPFGGVHIPLLLLDDQVSALSVLIGIAGLLILGIVVRLLMCVMMRAALDSVLAVGILHQIFDASNNNGAVVDSVLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGVFAKRCIPLPDSAHEVR
Ga0307300_100740091	3300028880	Soil	FLDDQVSALSVLIGLAGLLILGIVVRLLMGVMMRAAADSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGDMTQLAAAVLAALVAAWLRWRRPGVFAKRHIPLRDSPPAVG
Ga0307300_101976172	3300028880	Soil	GIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGNMTQLAAAILTVLVAAWLLWRRRGVFAKRHIPLRESPREVG
Ga0307277_105696321	3300028881	Soil	TALPFACVHVPLLLLDNQVSPRSVLIGIAGLLILGIVLRLLMGVMLRAASDSVLAVGVLHQIFDASNNNGALVDSLLDGADASNMTQLAAVVLTVLLAAWLLWRRPGIFAKRHVPLLESRPEVR
Ga0307308_102707672	3300028884	Soil	TTLPFAGEHVPLLLLDDQVSVLSVLTGIAGLLILGIVVRLLMGMTLRAASDSVLAVGVLHQIFDASNNNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFAKRHTPLPDSSAEVQ
Ga0307304_101800512	3300028885	Soil	LMGLAGLLILGIVVRLLMGVMMRAAADSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGDMTQLAAAVLAALVAAWLRWRRPGVFAKRHIPLRDSPPAVG
Ga0307304_105800832	3300028885	Soil	GVHVPLLLLDDQVSALSVLLSIAGLLILGIVVRLLIGVMMRAASDSVLAVGVLHQIFDASNNNGGLVDSVLDGADAGNMTQLAAAVLTVLIAAWLLWRRPGAFAKRYVPLRDSPPEGG
Ga0308197_100960671	3300031093	Soil	GLLILGIVVRLLMGVMMRAAADSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGDMTQLAAAVLTALVAAWLRWRRPGVFAKRHVQLRDSPPEVG
Ga0308199_11893212	3300031094	Soil	VRLLMGVMMRAAADSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGDMTQLAAAVLAALVAAWLRWRRPGVFAKRHIPLRDSPPAVG
Ga0307405_120697171	3300031731	Rhizosphere	PFAGVHVPLLLLDDQVSALSLLMGIAGLLILGIVIRLLMGVMLRAALDSVLAVGILHQIFDASNNNGALVDSLLEGADAGNMSQVAAAILTVLIAAWLLWRRPGAFARRQIPLPDSPREV
Ga0307413_112058181	3300031824	Rhizosphere	HIPLLLLDDQVSALSLLKGVAGLLILGIVIRLLMGVMLRAALDSVLAVGILHQIFDASNNNGALVDSLLEGADAGNMTQFAAAILTLLIAAWLLWRRPGAFAKRQIPLPDSPREVR
Ga0307410_100999531	3300031852	Rhizosphere	SVLRGVAGLLILGIVIRLLMGVMLRAASDSVLAVGILHQIFDASNNNGALVDSILDGADAGNMTQFAAVMLTVLVAAWLLWRRPGAFAKRQITRPDSPPEVR
Ga0307406_120225221	3300031901	Rhizosphere	LLILGIVIRLLMGVTMRAASDSVLAVGILHQIFDASNNNGALVDSLLDGADAGNMTQIAAAVLTVLIAAWLLWRHPGAFTKRHTPPPVSSREVG
Ga0307407_104885411	3300031903	Rhizosphere	MGVMLRAASDSVLAVGILHQIFDASNNNGALVDSILDGADAGNMTQFAAVMLTVLVAAWLLWRRPGAFAKRQITRPDSPPEVR
Ga0307407_105130231	3300031903	Rhizosphere	GLLILGIVIRLLMGVTLRAAVDSVLAVGLLHQIFDASNDNGALVDSLLDGADAGNMTQLAAVVLTVLVAAWLLWRRPGAFGKRHIPLPDSAHEVG
Ga0307412_118671832	3300031911	Rhizosphere	HLPLLLLDDQVSVLSILKGIAGLLILGVAVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGALVDSVLDGADAGNMTQLAAVILTVLIAAWLLWRRPGIFAKRHIPLRESRPEVR
Ga0308175_1009162281	3300031938	Soil	GLLILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSLLDGADAGNMTQLATVVLTVLVAAWLLWRRPGAFARRRVPGDISAENG
Ga0307409_1017607252	3300031995	Rhizosphere	FAGVHVPLLLLDDRVSALSLLMGIAGLLILGIVIRLLMGVMLRATLDSVLAVGLLHQIFDASNNNGALVDSLLDGADAGNMTQVATAILTVLIAAWLLWRRPGAFAKRQIPLPDSPREGG
Ga0307414_105741391	3300032004	Rhizosphere	TALPFAGVHVPLLLLDDQVSALSLLMGIAGLLILGIVIRLLMGVMLRAALDSVLAVGILHQIFDASNNNGALVDSLLEGADAGNMSQVAAAILTVLIAAWLLWRRPGAFARRQIPLPDSPREVR
Ga0307414_119419362	3300032004	Rhizosphere	DQLSARSVLRGVAGLLILGIVIRLLMGVMLRAASDSVLAVGILHQIFDASNNNGALVDSILDGADAGNMTQFAAVMLTVLVAAWLLWRRPGAFAKRQITRPDSPPEVR
Ga0307411_112212571	3300032005	Rhizosphere	VLTALPFAGVHVPLLLLDDQVSARSVLRGVAGLLILGIVIRLLMGVMLRAASDSVLAVGILHQIFDASNNNGALVDSILDGADAGNMTQFAAVMLTVLVAAWLLWRRPGAFAKRQITRPDSPPEVR
Ga0307415_1003767012	3300032126	Rhizosphere	AVLTALPFAGVHVPLLLLDDQVSARSVLRGVAGLLILGIVIRLLMGVMLRAASDSVLAVGILHQIFDASNNNGALVDSILDGADAGNMTQFAAVMLTVLVAAWLLWRRPGAFAKRQITRPDSPPEVR
Ga0307415_1012803741	3300032126	Rhizosphere	PFAGVHVPLLLLDDQVTPLSILKGIAGLLILGIAIRLLMGVMLRAALDSVLAVGILHQIFDASNNNGSLVDSLLDGADAGDMTQLAAVVLTVLLAAWLLWRRPGAFAKRHVPLRESRPEV
Ga0307472_1021035562	3300032205	Hardwood Forest Soil	PLSVLIGIAGLVILGIVVRLLMGVMMRAALDSVLAVGVLHQIFDASNNNGGLVDSVLDGADAGNMTQLAAAMLTVLVAAWLLWRRPGAFATRHTPLPDSAGEVRSP
Ga0364925_0112088_186_599	3300034147	Sediment	LEARFNFVVAGVLTALPFAGAHIPLLLLDDQVSALSVLMGIAGLLILGIVIRLLMGVMLRAALDSVLAVGILHQIFDASNNNSALVDSLLDGADAGNMTQLAAVILTVLVAAWLLWRRPGAFAKRYVPLPDSSREVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089546

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences