Metagenome / Metatranscriptome Family F089540

Overview

Basic Information

• Family ID: F089540
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 109
• Average Sequence Length: 56 residues
• Representative Sequence: AFVYHGLNDTGDHVYYFSPEASAIAIATKAFQTFDVTQCAEKPKLDGFEKVTIS
• Number of Associated Samples: 87
• Number of Associated Scaffolds: 109

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 33.33 %
• % of genes near scaffold ends (potentially truncated): 5.50 %
• % of genes from short scaffolds (< 2000 bps): 7.34 %
• Associated GOLD sequencing projects: 79
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (95.413 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (28.440 % of family members)
• Environment Ontology (ENVO): Unclassified (43.119 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (72.477 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 10.98%
  β-sheet: 24.39%
  Coil/Unstructured: 64.63%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF05443	ROS_MUCR	8.26
PF00589	Phage_integrase	3.67
PF01541	GIY-YIG	1.83
PF13586	DDE_Tnp_1_2	1.83
PF04226	Transgly_assoc	1.83
PF01609	DDE_Tnp_1	1.83
PF13340	DUF4096	1.83
PF13473	Cupredoxin_1	0.92
PF09832	DUF2059	0.92
PF03009	GDPD	0.92
PF00782	DSPc	0.92
PF02899	Phage_int_SAM_1	0.92
PF03631	Virul_fac_BrkB	0.92
PF00239	Resolvase	0.92
PF13551	HTH_29	0.92
PF11381	DUF3185	0.92
PF13701	DDE_Tnp_1_4	0.92
PF13565	HTH_32	0.92
PF01656	CbiA	0.92
PF03050	DDE_Tnp_IS66	0.92
PF00571	CBS	0.92
PF01954	AF2212-like	0.92
PF07369	DUF1488	0.92
PF13561	adh_short_C2	0.92
PF00072	Response_reg	0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG4957	Predicted transcriptional regulator	Transcription [K]	8.26
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.83
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.83
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.83
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.83
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.83
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.83
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.83
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.92
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.92
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.92
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.92
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.92
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.92
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.92

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.41 %
All Organisms	root	All Organisms	4.59 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.41 %
cellular organisms	root	All Organisms → cellular organisms	4.59 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.83 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	1.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300006904|Ga0075424_100729680	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1058
3300007255|Ga0099791_10046909	All Organisms → cellular organisms → Bacteria	1929
3300009038|Ga0099829_10088859	Not Available	2381
3300009088|Ga0099830_10871325	Not Available	744
3300011270|Ga0137391_10231654	Not Available	1603
3300012362|Ga0137361_11859602	All Organisms → cellular organisms → Bacteria	519
3300012976|Ga0134076_10385891	All Organisms → cellular organisms → Bacteria	622
3300027909|Ga0209382_11224418	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	766
3300032002|Ga0307416_101155877	Not Available	879

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.05%
Host-Associated	Host-Associated	44.95%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.21%
Plants	Host-Associated → Plants	44.04%
Aquatic	Environmental → Aquatic	1.83%
Human	Host-Associated → Human	0.92%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.42%
Marine	Environmental → Aquatic → Marine	0.92%
Sediment	Environmental → Aquatic → Sediment	0.92%
Digestive System	Host-Associated → Human → Digestive System	0.92%
Phylloplane	Host-Associated → Plants → Phylloplane	0.92%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	36.70%
Loam	Environmental → Terrestrial → Soil → Loam	4.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.92%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	36.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.92%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.92%

Habitat

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	28.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.75%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.92%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental
3300012212	Combined assembly of Hopland grassland soil	Host-Associated
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_117710231	3300000787	Soil	RPFIMGYHENGSTPPENAVVYHGLNDTGDHVYYFSPEASIIAIATKSFHTFDVTQCAEKPNLDGFDKVTIS*
F14TB_1019263222	3300001431	Soil	YFSPEASAIALATKAFQTFDVTQCTEKPNLDGFEKVTIS*
F14TB_1058331103	3300001431	Soil	HGLNDAGDHVYYFSPEASTIALATKAFHTFDVTQCTEKPNLDGFEEVTIS*
Ga0055465_100857663	3300004013	Natural And Restored Wetlands	IMGYHEHGATPPANAFVYHGFNETGDHVYYFSPEASVIAIATKAFQTFDVTQCAEKPPLEGFEKVTIS*
Ga0062595_1002709733	3300004479	Soil	LNDTGDHVYYFSPEASTIALATKAFQTFDVTPCTEQPNLDGCEKVTIS*
Ga0058860_116398971	3300004801	Host-Associated	HEHGSTPPENAFVYHGVNETGDHVYYFSPEASTIALATKAFQTFDVTPCADKPHLDGFDKVTIS*
Ga0066684_106491551	3300005179	Soil	RPFIMGYHEHGSTPPKNAVVYHGVNDAGDHVYYFSPEASTIALATKAFHTFDVTQCTEQPNLDGCEEVTIS*
Ga0066685_106801132	3300005180	Soil	YYFSPEASTIALATKAFQTFDVTSCADKPNLEGCEKVTIS*
Ga0066678_106369792	3300005181	Soil	MGYHEHGSTPPENAVVYHGLNAAGDHVYYFSPEASTIAIATKAFQTFDVTPCAEKPHLDGCEKVTIS*
Ga0070708_1022705922	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	YHEHGTTPPKDAVVYHGLNDTGDHVYYFSPEASTIAIATRAFQRFDVTECAEKPNLDGFEKVTIS*
Ga0066689_105144821	3300005447	Soil	HVYYFSPEASTIALATKAFQTFDVTPCAEQPHLDGFEKVTITYSVFHMT*
Ga0070707_1019441721	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	YYFSPEASAIAIAEKAFHTFDVTPCAEQPNLDGFEEVTIS*
Ga0070698_1001631733	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MGYNEHGTTPPKDAVVYHGLNDTGDHVYYFSPEASTIAIATRAFHTFDVTQCAEKPNLDGFEKVTIS*
Ga0066707_103662602	3300005556	Soil	MNHGLNDTGGHVYYFSPEASIIAIATKTFQTFNVTQCAEKPNLDGFDKVTIS*
Ga0066693_100266591	3300005566	Soil	DHVYYFSPEASAIAIATKAFQTFDVTQCAEHPNLDGFEKVTIS*
Ga0075417_104237721	3300006049	Populus Rhizosphere	NAVVYHGLNDAGDHVYYFSPEASIIAIATKAFHTFDVTQCAEKPNLDGFKEVTIS*
Ga0075432_101867831	3300006058	Populus Rhizosphere	YHGLTATGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPNLDGCEKVTIS*
Ga0075428_1003386291	3300006844	Populus Rhizosphere	VVYHGLNDTGDHVYYFSPEASTIAIATKAFQTFDVTQCAEKPHLDGFEKVTIT*
Ga0075428_1014017402	3300006844	Populus Rhizosphere	DTGDHVYYFSPEASIIAIATKAFHTFDVTQCTEKPSLDGFDKVTIS*
Ga0075428_1014287061	3300006844	Populus Rhizosphere	AFVYHGLNDTGDHVYYFSPEASAIAIATKAFQTFDVTQCAEKPKLDGFEKVTIS*
Ga0075428_1019160802	3300006844	Populus Rhizosphere	SPEASIIAIATKAFHTFDVTQCAEKPNLDGFDKVTIS*
Ga0075428_1027334461	3300006844	Populus Rhizosphere	NDTGDHVYYFSPEASTIALATKAFQTFDVTQCAEQPNLDGFEKVTIT*
Ga0075421_1005166683	3300006845	Populus Rhizosphere	PFIMGYHEHGSTPPKNAVVYHGLNDAGDHVYYFSPEASIIAIATKAFHTFDVTQCAEKPNLDGFKEVTIS*
Ga0075421_1027150951	3300006845	Populus Rhizosphere	LNDTGDHVYYFSPEASTIALATKAFQTFDVTQCAEQPNLDGFEKVTIT*
Ga0075430_1008581821	3300006846	Populus Rhizosphere	GLNDTGDHVYYFSPEASTIALATKAFQTFDVTQYAEQPNLDGCEKVTIS*
Ga0075433_116701111	3300006852	Populus Rhizosphere	TGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPHLDGFEKVTIS*
Ga0075434_1026489681	3300006871	Populus Rhizosphere	LTDTGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPNLDGCEKVTIS*
Ga0075429_1001613071	3300006880	Populus Rhizosphere	MRPFIMGYHENGSTPPENAVVYHGLNDTGDHVYYFSPEASIIAIATKAFHTFDVTQCAEKPNLDGFDKVTIS*
Ga0075424_1007296801	3300006904	Populus Rhizosphere	NAFVYHGLTDTGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPHLDGCEKVTIS*
Ga0075424_1016134232	3300006904	Populus Rhizosphere	PPENAVVYHGLNDTGDHVYYFSPEASTIAIATKAFQTFNVTQCAEQPNLDGFDKVTIS*
Ga0075424_1019244081	3300006904	Populus Rhizosphere	MRPFIMGYHEHDSTPPANTVVYHGLNDMGDHVYYFSPEASAIAIATKAFHTFDVMQCAEKPNLDGFDKVTIR*
Ga0075419_103096051	3300006969	Populus Rhizosphere	GLNDAGDHVYYFSPEASTIALATKAFHTFDVTQCTEKPKLDGFEEVTIS*
Ga0099791_100469094	3300007255	Vadose Zone Soil	PFIMGYHAHGSTPPENAVVYHGLNDAGDHVYYFSPEASTIAIATKAFQTFDVTPCAEKPPLDGCEKVTIS*
Ga0099829_100888592	3300009038	Vadose Zone Soil	MGYHEHGSTPPENAFVYHGLNDTGDHVYYFSPEASTIALATKAFQTFDVTQCAEQPHLDGFDKVTIS*
Ga0099829_115757442	3300009038	Vadose Zone Soil	FSPEASTIALATKAFQTFDVTPCAEQPHLDGFEKVTIT*
Ga0099830_108713252	3300009088	Vadose Zone Soil	MGYHETGATPPKNAVVYHGLNDTGDHVYYFSPEASAIAIAAKAFHTFDVTPCAEKPNLDGFQEVKIS*
Ga0099827_118309021	3300009090	Vadose Zone Soil	YVYYFSPDASTIALATQAFQPFDVAPCAEKPPLDGCEKVTIS*
Ga0111539_111535101	3300009094	Populus Rhizosphere	AHGSTPPANAFVYHGLTATGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPHLDGCEKVTIS*
Ga0105245_102141333	3300009098	Miscanthus Rhizosphere	DTGDHVYYFSPEASTIALATKAFQTFDVTQCPEKPDLDGCERVTIS*
Ga0075418_103570724	3300009100	Populus Rhizosphere	LTDTGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPHLDGCEKVTIS*
Ga0075418_105814673	3300009100	Populus Rhizosphere	YHGLNDTGDHVYYFSPEASIIAIATKAFHTFDVTQCTEKPSLDGFDKATIS*
Ga0075418_108402722	3300009100	Populus Rhizosphere	YHGLNDTGDHVYYFSPEASIIAIATKAFHTFDVTQCAEKPNLDGFDKVTIS*
Ga0114129_134101391	3300009147	Populus Rhizosphere	VYYFSPEASVIAIATKAFQTFDVTQCTEKPNLDGCEKVTIS*
Ga0111538_118520153	3300009156	Populus Rhizosphere	VYHGLTATGDHVYYFSPEASAIAIATKAFQTFDVTQCTEKPHLDGCEKVTIS*
Ga0111538_121067302	3300009156	Populus Rhizosphere	SPEASIIAIATKAFHTFDVTQCTEKPSLDGFDKVTIS*
Ga0075423_100614088	3300009162	Populus Rhizosphere	SPEASAIALATKAFQTFDVTQCTEKPNLDGCEKVTIS*
Ga0105249_101701994	3300009553	Switchgrass Rhizosphere	MGYNEAGATPPENAVVYHGLNDTGAHVYYFSPEASTIALATKALQTFDVTPCAEKPHLDGCEKVTIS*
Ga0105249_130088092	3300009553	Switchgrass Rhizosphere	YFSPEASTIAIATKAFQTFDVTPCAEQPNLDGCDKVTIS*
Ga0126315_106371041	3300010038	Serpentine Soil	PPANAFVYHGLTDTGDHVYYFSPEASAIALATKAFQTFDVTQCAEKPHLDGCEKVTIS*
Ga0126380_103794402	3300010043	Tropical Forest Soil	ASTIALATKAFHTFDVTQCTEKPNLDGFEEVTIS*
Ga0126310_108979571	3300010044	Serpentine Soil	ENAFVYHGLNDTGDHVYYFSPEASVIAIATKAFQTFNVTQCAEKPNLDGFEKVTIS*
Ga0126382_116546081	3300010047	Tropical Forest Soil	MRPFIMGYNEAGATPPENAVVYHGLNDTGDHVYYFSPEASTIAIATKAFQTFDVTPCPDKPHLDGFEKVTIS*
Ga0126377_134743781	3300010362	Tropical Forest Soil	MGYNEAGATPPENAVVYHGFNDTGDHVYYFSPEASAIAIDTKAFQTFDVTPCPDKPNLDGFEKVTIS*
Ga0105239_113916492	3300010375	Corn Rhizosphere	GLNDTGAHVYYFSPEASTIALATKALQTFDVTPCAEKPHLDGCEKVTIS*
Ga0126383_100681533	3300010398	Tropical Forest Soil	MGYHEYGSTPPENAVVYHGLNDTGDHVYYFSPEASTIAIATKAFHTFDVMQCAEKPNLDGFDKVTIR*
Ga0137392_104864221	3300011269	Vadose Zone Soil	VVYHGLNDAGDHVYYFSPEASTIAIATKAFQTFDVTSCAEKPPLDGCEKVTIS*
Ga0137391_102316545	3300011270	Vadose Zone Soil	YHAHGSTPPENAVVYHGLNDAGDHVYYFSPEASTIAMGTKAFQTLDVTQCAEKPHLDGFDKVTIS*
Ga0137429_12119992	3300011437	Soil	GLNDAGDHVYWFSPEASTIALATQAFRTFDVTQCAEKPHLDGFEKVTIS*
Ga0137389_116158711	3300012096	Vadose Zone Soil	LMRPFIMGYHEHGTTPPKDAFVYHGLNDAGDHVYYFSPEASTIAIATRAFHTFDVTQCVEKPNLDGFEKVTIS*
Ga0137388_118670131	3300012189	Vadose Zone Soil	GLNDTGDHVYYFSPEASTIALATKAFQTFDVTQCAEQPHLDGFDKVTIS*
Ga0137365_105805221	3300012201	Vadose Zone Soil	PFIMGYHAHGSTPPANAFVYHGLNDTGDHVYYFSPEASTIAIATKAFQTFDVTQCAEQPHLDGCDKVTIS*
Ga0137399_100115991	3300012203	Vadose Zone Soil	PANAVVYHGLNETGDHVYYFSPEASTIALATKAFQTFDVTPCAEQPHLDGFEKVTIT*
Ga0137380_114903201	3300012206	Vadose Zone Soil	LMRPFIMGYHEHGSTPPENAVVYHGLNDTGDHVYYFSPEASTIAIATKAFQTFDVTPCPEKPNLDGFEEVTIS*
Ga0137381_111105691	3300012207	Vadose Zone Soil	STPPENAFVYHGLNDTGNHVYYFSPEASTIAIATKAFQTFDVTPCAEQPHLDGFEKVTIT
Ga0137381_112013313	3300012207	Vadose Zone Soil	YHGLNDAGDHVYYFSPEASTIAIATKAFQTFDVTQCAEQPNLEGCEKVTIS*
Ga0137379_108861941	3300012209	Vadose Zone Soil	NAVVYHGLNDAGDHVYYFSPEASTIAIATKAFQTFDVTPCAEKPHLDGFEKVTIS*
Ga0150985_1098950162	3300012212	Avena Fatua Rhizosphere	ALMRPFIMGYHEHGSTPPANAFVYHGFNDTGDHVYYFSPEASAIALATKAFQTFDVTQCAEKPHLDGFEKVTIS*
Ga0137370_102150991	3300012285	Vadose Zone Soil	HVYYFSPEASTIAIATKAFQTFDVTPCPEKPNLDGFEEVTIS*
Ga0137387_103953441	3300012349	Vadose Zone Soil	KNAVVYHGLNDTGDHVYYFSPEASTIAIATKAFQTFDVTPCPEKPNLDGFEEVTIS*
Ga0137387_107198573	3300012349	Vadose Zone Soil	TPPENAFVYHGLNDTGDHVYYFSPEASAIAIATKAFQTFDVTQCAEKPNLDGFEKVTIS*
Ga0137384_107852873	3300012357	Vadose Zone Soil	IKEQLYYFSPEASTIAIATRAFHTFDVTQCAEKPNLDGFEKVTIS*
Ga0137384_110386642	3300012357	Vadose Zone Soil	GLNDAGDHVYYFSPEASTIAIATKAFHTFDVTPCAEKPHLDGCEEVTIS*
Ga0137361_107222491	3300012362	Vadose Zone Soil	YHGLNDTGGHVYYFSPEASIIAIATKTFQTFNVTQCAEKPNLDGFDKVTIS*
Ga0137361_118292111	3300012362	Vadose Zone Soil	FIMGYHEHGSTPPANAAVYHGLNDTGDHVYYFSPEASTIAIATKAFQTFDVTQCTEKPNLDGCEKVTIS*
Ga0137361_118596021	3300012362	Vadose Zone Soil	MRRFIMEYHAHGSTPPENAVVYHGVNDAGDHVYYFSPEASTIAIATKAFQMFDVTPCAEKPDLDGFEEVTIS*
Ga0137390_112066431	3300012363	Vadose Zone Soil	HAHGSTPPENAVVYHGVNDAGDHVYYFSPEASTIAIATKAFQMFDVTPCAEKPDLDGFEEVTIS*
Ga0157349_10251732	3300012489	Unplanted Soil	MGYHEHGATPPANAVVYHGLNDTGDHVYYFSPEASTIALATKAFQTFDVTQCAEQPNLDGCEKVTIS*
Ga0137395_107024842	3300012917	Vadose Zone Soil	MRKFIMGYNETGATPPKDAVVYHGLNAAGDHVYYFSPEASAIAIAEKAFHTFDVTACTDKPHLDGCEKVTIS*
Ga0137396_110849201	3300012918	Vadose Zone Soil	STPPENAVVYHGLNDAGDHVYYFSPEASTIAIATKAFQTFDVTQCVEQPDLDGFDKVTIS
Ga0137394_115824011	3300012922	Vadose Zone Soil	MGYHAHGSTPPENAVVYHGLNDAGDHVYYFSPEASTIAIATKAFQTFDVTPCAEKPNLDGCEKVTIS*
Ga0137407_112586591	3300012930	Vadose Zone Soil	HEHGATPPANAVVYHGLNETGDHVYYFSPEASTIALATKAFQTFDVTPCAENPHLDGFEKVTIT*
Ga0134077_103940011	3300012972	Grasslands Soil	HEHGTTPPKDAFVYHGLNDTGDHVYYFSPEASTIAIATRAFHTCDVTQCAEKPNLDGFEKVTIS*
Ga0134076_103858912	3300012976	Grasslands Soil	MGYHEHGSTPPENAVVYHGLNAAGDHVYYFSPEASTIAIATKAFQTFNVTQCAEKPHLDGFEKVTIS*
Ga0163162_102539083	3300013306	Switchgrass Rhizosphere	MGYNEAGATPPENAVVYHGLKDTGAHVYYFSPEASTIALATKALQTFDVTPCAEKPHLDGFEKVTIS*
Ga0163162_111612251	3300013306	Switchgrass Rhizosphere	MSPFSSKKVYGGEIMGYHEHGSTPPENAFVYHGLNDTGDHVYYFSPEASTIALATKAFQTFDVTQCAEQPNLDGCEKVTIS*
Ga0157375_125746121	3300013308	Miscanthus Rhizosphere	FIMGYHEHGATPPANAVVYHGLNDTGDHVYYFSPEASTIALATKAFQTFDVTQCPEKPDLDGCERVTIS*
Ga0132258_135311093	3300015371	Arabidopsis Rhizosphere	MGYNEAGATPPKNAVVYHGLNDTGDHVYYFSPEASTIAIATKAFHTFNVTQCAEKPHLDGFEEVTIS*
Ga0132257_1044509571	3300015373	Arabidopsis Rhizosphere	MGYHEHGSTPPANAVVYHGLNDTGDHVYYFSPEASTIALATKAFQTFDVTQCAEQPNLDGCEKVTIS*
Ga0182036_118410982	3300016270	Soil	NDTGDHVYYFSPEASAIAIATKAFQTFNVTQCAEKPNLDGFEKVTISFATGHFSKSL
Ga0066667_118154871	3300018433	Grasslands Soil	LMRPFIMGYHEHGSTPPENAVVYHGLNAAGDHVYYFSPEASTIAIATKAFQTFDVTQCAEKPNLEGCEKVTIS
Ga0066662_117802561	3300018468	Grasslands Soil	TFVYHGLNETGDHVYYFSPEASTIALATKAFQTFDVTPCAEQPHLDGFEKVTIT
Ga0066662_129410732	3300018468	Grasslands Soil	SPEASAIAIATKAFQTFDVTQCVEKPNLDGFEKVTIS
Ga0207712_104148143	3300025961	Switchgrass Rhizosphere	MGYHENGSTPPENAVVYHGLNDTGDHVYYFSPEASIIAIATKAFHTFDVTQCAEKPNLDGFDKVTIS
Ga0207703_111069532	3300026035	Switchgrass Rhizosphere	DTGDHVYYFSPEASTIALATKAFQTFDVTPCTEQPNLDGCEKVTIS
Ga0207675_1000789101	3300026118	Switchgrass Rhizosphere	GLNDAGDHVYYFSPEASTIAIATKAFQTFDVTPCAEQPNLDGCEKVTIS
Ga0209795_101212431	3300027718	Agave	HAHGSTPPANAFVYHGLTATGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPNLDGCEKVTIS
Ga0209180_101730393	3300027846	Vadose Zone Soil	MGYHEHGTTPPKDAFVYHGLNDTGDHVYYFSPEASTIAIATRAFHTFDVTQCAEKPNLDGFEKVTIS
Ga0209814_102991562	3300027873	Populus Rhizosphere	HGSTPPKNAVVYHGLNDAGDHVYYFSPEASIIAIATKAFHTFDVTQCAEKPNLDGFKEVTIS
Ga0209481_100180767	3300027880	Populus Rhizosphere	PEASAIALATKAFQTFDVTQCTEKPNLDGCEKVTIS
Ga0209481_101805891	3300027880	Populus Rhizosphere	GLTATGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPNLDGCEKVTIS
Ga0209481_103264421	3300027880	Populus Rhizosphere	YFSPEASIIAIATKAFHTFDVTQCAEKPNLDGFDKVTIS
Ga0209590_109550031	3300027882	Vadose Zone Soil	GDHVYYFSPEASTIALATKAFQTFDVTPCAEQPHLDGFEKVTIT
Ga0207428_104518981	3300027907	Populus Rhizosphere	HVYYFSPEASAIALATKAFQTFDVTQCTEKPHLDGCEKVTIS
Ga0209382_112244181	3300027909	Populus Rhizosphere	IMGYHAHGSTPPANAFVYHGLTDTGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPHLDGCEKVTIS
Ga0310887_109052541	3300031547	Soil	GDHVYYFSPEASIIAIATKAFHTFDVTQCTEKPSLDGFDKVTIS
Ga0307410_107246221	3300031852	Rhizosphere	PEASVIAIATKAFQTFDVTPCAETPHVEGCEKVTIS
Ga0307416_1011558771	3300032002	Rhizosphere	YFSPEASAIALATKAFQTFDVTQCAEQPHLEGCEKVTIS
Ga0307411_115622831	3300032005	Rhizosphere	HGFNDTGDHVYYFSPEASAIALATKAFQTFDVTQCAEQPHLDGFEKVTIS
Ga0310906_102110731	3300032013	Soil	PPENAIVYHGLNDTGDHVYYFSPEASIIAIATKAFHTFDVTQCTEKPSLDGFDKVTIS