Metagenome / Metatranscriptome Family F089532

Overview

Basic Information

• Family ID: F089532
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 109
• Average Sequence Length: 42 residues
• Representative Sequence: MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
• Number of Associated Samples: 75
• Number of Associated Scaffolds: 109

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 42.20 %
• % of genes near scaffold ends (potentially truncated): 34.86 %
• % of genes from short scaffolds (< 2000 bps): 80.73 %
• Associated GOLD sequencing projects: 69
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (33.028 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (22.936 % of family members)
• Environment Ontology (ENVO): Unclassified (66.972 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (87.156 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 76.74%
  β-sheet: 0.00%
  Coil/Unstructured: 23.26%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF12684	DUF3799	23.85
PF13392	HNH_3	19.27
PF08299	Bac_DnaA_C	14.68
PF01555	N6_N4_Mtase	8.26
PF02195	ParBc	8.26
PF10544	T5orf172	3.67
PF04466	Terminase_3	3.67
PF14550	Peptidase_S78_2	1.83
PF00856	SET	1.83
PF08291	Peptidase_M15_3	0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	14.68
COG0863	DNA modification methylase	Replication, recombination and repair [L]	8.26
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	8.26
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	8.26
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	3.67
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.92
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.92

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.97 %
Unclassified	root	N/A	33.03 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	14.68 %
Unclassified	root	N/A	33.03 %
Viruses	superkingdom	All Organisms → Viruses	52.29 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.68 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	5.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	9.17 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	9.17 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	5.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	33.03 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	9.17 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.83 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	9.17 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	9.17 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	5.50 %

Level 6

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9.17 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.50 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Unclassified	root	N/A	33.03 %

Level 7

Name	Rank	Taxonomy	Distribution
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	7.34 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	3.67 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.83 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.92 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Rhodobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	1.83 %
Unclassified	root	N/A	33.03 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	2.75 %

Level 8

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	7.34 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.83 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	0.92 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	3.67 %
Unclassified	root	N/A	33.03 %
unclassified Rhodobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae	1.83 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %

Level 9

Name	Rank	Taxonomy	Distribution
Anaerotruncus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	0.92 %
Dysgonomonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae	2.75 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1.83 %
Inhavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus	3.67 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1.83 %
Unclassified	root	N/A	33.03 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %

Level 10

Name	Rank	Taxonomy	Distribution
Anaerotruncus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	0.92 %
Dysgonomonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas	2.75 %
Maribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter	1.83 %
Nonlabens virus P12024L	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	3.67 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1.83 %
Unclassified	root	N/A	33.03 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %

Level 11

Name	Rank	Taxonomy	Distribution
Anaerotruncus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	0.92 %
Nonlabens virus P12024L	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	3.67 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1.83 %
Unclassified	root	N/A	33.03 %
unclassified Dysgonomonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas	2.75 %
unclassified Maribacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter	1.83 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %

Level 12

Name	Rank	Taxonomy	Distribution
Anaerotruncus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	0.92 %
Dysgonomonas sp. Marseille-P4677	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas → Dysgonomonas sp. Marseille-P4677	2.75 %
Maribacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1.83 %
Nonlabens virus P12024L	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	3.67 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1.83 %
Unclassified	root	N/A	33.03 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300023210|Ga0233412_10513854	All Organisms → Viruses	542
(restricted) 3300024059|Ga0255040_10010806	All Organisms → Viruses → Predicted Viral	3011
(restricted) 3300024519|Ga0255046_10130546	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1097
(restricted) 3300024519|Ga0255046_10131157	All Organisms → Viruses → Predicted Viral	1095
(restricted) 3300024520|Ga0255047_10278675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	847
3300000116|DelMOSpr2010_c10196691	Not Available	649
3300000116|DelMOSpr2010_c10242403	Not Available	553
3300001450|JGI24006J15134_10001459	Not Available	13468
3300001947|GOS2218_1008191	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1428
3300002483|JGI25132J35274_1063651	Not Available	781

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.08%
Terrestrial	Environmental → Terrestrial	0.92%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	96.33%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.75%
Soil	Environmental → Terrestrial → Soil	0.92%

Type

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	0.92%
Coastal	Environmental → Aquatic → Marine → Coastal	50.46%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.92%
Inlet	Environmental → Aquatic → Marine → Inlet	1.83%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	8.26%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.83%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.60%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.83%
Sediment	Environmental → Aquatic → Marine → Sediment	1.83%
Strait	Environmental → Aquatic → Marine → Strait	11.01%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.50%

Subtype

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.59%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.83%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.92%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.92%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	48.62%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	14.68%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	11.01%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.92%

Habitat

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	22.94%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.92%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.59%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	11.93%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.92%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	13.76%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.67%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.83%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.92%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.92%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.92%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.92%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	1.83%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.92%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	4.59%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	11.01%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	10.09%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.83%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.83%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.92%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental
3300001947	Marine microbial communities from the Gulf of Maine, Canada - GS002	Environmental
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental
3300003409	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA	Environmental
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental
3300005433	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B	Environmental
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_101966913	3300000116	Marine	ETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
DelMOSpr2010_102424032	3300000116	Marine	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYD*
JGI24006J15134_1000145910	3300001450	Marine	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDT*
GOS2218_10081912	3300001947	Marine	TIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
JGI25132J35274_10636512	3300002483	Marine	MKGFISDIEMIQLVIKLGGYEDALEMLQEVKEEMIILDALNYEYVRPH*
JGI25132J35274_10683452	3300002483	Marine	VKKYGNGTESNRKKQVMKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDT
JGI26088J50261_100033227	3300003409	Marine	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE*
JGI26088J50261_100175512	3300003409	Marine	MKDFINDMEMIQLAINLGDYHDAMRMLQEVKEEMIILDALNYD*
Ga0066224_11752022	3300004457	Marine	MKGFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDLLNYD*
Ga0073579_118933044	3300005239	Marine	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0066830_100011351	3300005433	Marine	MKGFISDIEMIQLVIKLGGYEDALEMLQEVKEEMIILDALNYDA*
Ga0066825_100529713	3300005510	Marine	MKGFISDIEMIQLVIKLGGYEAALEMLQVVKEEMIILDALNYE*
Ga0074648_100444316	3300005512	Saline Water And Sediment	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYD*
Ga0074649_100829020	3300005613	Saline Water And Sediment	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYD*
Ga0076924_11009142	3300005747	Marine	MIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0078893_106213913	3300005837	Marine Surface Water	LKRFISDIETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0075478_102547942	3300006026	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA*
Ga0098048_10928782	3300006752	Marine	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMII
Ga0098048_11312282	3300006752	Marine	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0098055_11117181	3300006793	Marine	SDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0070747_12038511	3300007276	Aqueous	HTISMKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYD*
Ga0070747_12684291	3300007276	Aqueous	RQLHIKRYAMKRFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDALNYE*
Ga0099851_11723651	3300007538	Aqueous	MIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA*
Ga0099849_10159202	3300007539	Aqueous	LKDFINDMEMIQLAIKLGDYHDAMRMLQEVKEEMIILDALNYE*
Ga0099849_10488461	3300007539	Aqueous	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN*
Ga0099849_10766692	3300007539	Aqueous	LKDFINDMEMIMLAIKLGDYHDAMRMLQEVKEEMIILDALNYE*
Ga0099849_10838092	3300007539	Aqueous	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYD*
Ga0099849_10963992	3300007539	Aqueous	MTDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0099849_13079831	3300007539	Aqueous	NDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALNYE*
Ga0099849_13132571	3300007539	Aqueous	EIILKDFINDMEMIMLAIKLGDYHDAMRMLQEVKEEMIILDALNYE*
Ga0099849_13502001	3300007539	Aqueous	RYAMTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0099846_10769282	3300007542	Aqueous	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0099846_12667522	3300007542	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNY
Ga0070751_10103688	3300007640	Aqueous	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDA*
Ga0070751_11603912	3300007640	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0075480_104352912	3300008012	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEIIILDALNYDA*
Ga0098049_10665663	3300010149	Marine	LKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0129348_10846682	3300010296	Freshwater To Marine Saline Gradient	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE*
Ga0129348_11312381	3300010296	Freshwater To Marine Saline Gradient	LINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0129345_10500883	3300010297	Freshwater To Marine Saline Gradient	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALNYE*
Ga0129345_11374272	3300010297	Freshwater To Marine Saline Gradient	MQDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYD*
Ga0129345_12144381	3300010297	Freshwater To Marine Saline Gradient	MIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE*
Ga0129345_12918873	3300010297	Freshwater To Marine Saline Gradient	LHIKRYAMTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0129342_11530232	3300010299	Freshwater To Marine Saline Gradient	LTDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA*
Ga0129342_11831181	3300010299	Freshwater To Marine Saline Gradient	AMTEFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALNYE*
Ga0129342_12547311	3300010299	Freshwater To Marine Saline Gradient	TDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0129351_10994351	3300010300	Freshwater To Marine Saline Gradient	NDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN*
Ga0129351_11326651	3300010300	Freshwater To Marine Saline Gradient	MQDLINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN
Ga0129351_13554161	3300010300	Freshwater To Marine Saline Gradient	DLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0136656_11413461	3300010318	Freshwater To Marine Saline Gradient	IEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE*
Ga0114922_117209071	3300011118	Deep Subsurface	KRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0151671_100775113	3300011253	Marine	MKGFISDIEIVMMAIKLGDYEDALEILQAVKEEMIILDLLNYD*
Ga0151675_10233642	3300011254	Marine	MKGFISDIEIVMMAIKLGDYEDALEILQAVKEEMIILDLLNYE*
Ga0129343_11223562	3300012967	Aqueous	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA*
Ga0181412_100235218	3300017714	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDA
Ga0181390_100191019	3300017719	Seawater	MKRFISDIEMIQLAIKLGDYEDALEMLQEVKEEMIIKEDKRLMIILDALNYE
Ga0181431_10331972	3300017735	Seawater	MKRFISDMETIQLAIKLGDYEDALQMLQEVKEEMIILDALNYDA
Ga0181431_10408642	3300017735	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEIIILDALNYE
Ga0181392_11418662	3300017749	Seawater	METIQLAIKLGDYEDALQMLQEVKEEMIILDALNYDA
Ga0187217_12257841	3300017770	Seawater	ISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0181423_11313891	3300017781	Seawater	MIDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE
Ga0181380_10633383	3300017782	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDVLNYE
Ga0181379_13301641	3300017783	Seawater	AIKLGDYEDALEMLQEVKEEMIIKEDKRLMIILDALNYE
Ga0180433_106553912	3300018080	Hypersaline Lake Sediment	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE
Ga0181563_103940264	3300018420	Salt Marsh	ILNRFINDLELVMLAIRNEDLEDALLMLQEIREEMIILDALNYE
Ga0181563_104027511	3300018420	Salt Marsh	FINDLELVMLAIRNEDLEDALLMLQEIREEMIILDALNYE
Ga0181591_107249302	3300018424	Salt Marsh	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA
Ga0181562_104276173	3300019459	Salt Marsh	MTRFINDLELVMLAIRNEDLEDALLMLQEIREEMIILDALNYE
Ga0213867_10853942	3300021335	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYD
Ga0213865_1001095513	3300021373	Seawater	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN
Ga0213865_100382693	3300021373	Seawater	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0213869_103107322	3300021375	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0222718_101015592	3300021958	Estuarine Water	MTDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE
Ga0222718_101291163	3300021958	Estuarine Water	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIIKEDKRLMIILDALNYDA
Ga0222715_100115263	3300021960	Estuarine Water	MKGFISDIEMIQLVIKLGGYEDALEMLQEVKEEMIILDALNYE
Ga0222715_102281162	3300021960	Estuarine Water	MTEFINDIETIMLAIKLGDYQDALTMLQEVKEEMIILDALNYD
Ga0222714_103582582	3300021961	Estuarine Water	MTEFINDIETIMLAIKLGDYQDALIMLQEVKEEMIILDALNYD
Ga0196899_11041074	3300022187	Aqueous	TIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDA
Ga0224503_101668072	3300022201	Sediment	MKRFISDMETIQLAIKLGDYYDALQMLQEVKEEMIIKEDKRLMIILDALNYE
Ga0224498_102043162	3300022202	Sediment	MKGFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDALNYE
(restricted) Ga0233412_105138542	3300023210	Seawater	MKRFISDMETIQLAIKLGDYEDALQMLQEVKEEMIILDALNYE
(restricted) Ga0255040_100108064	3300024059	Seawater	MKGFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDLFNYE
Ga0228603_100002216	3300024183	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDK
Ga0228602_10877181	3300024188	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALN
Ga0233402_10177031	3300024229	Seawater	KRHTMKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0233402_11165471	3300024229	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIIL
Ga0228661_10138575	3300024266	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDAL
Ga0228661_10294201	3300024266	Seawater	ISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDK
Ga0228654_10300521	3300024316	Seawater	KRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDK
(restricted) Ga0255046_101305463	3300024519	Seawater	MKGFISDIEIVMMAIKLGDYEDALEILQAVKEEMIILDLLNYD
(restricted) Ga0255046_101311572	3300024519	Seawater	MKGFISDMEIVMMAIKLGDYEDALEILQAVKEEMIILDLLNYD
(restricted) Ga0255047_102786752	3300024520	Seawater	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE
Ga0208791_10263601	3300025083	Marine	IILMKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0208793_10025521	3300025108	Marine	SDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0209756_10350442	3300025141	Marine	MKGFISDIEMIQLVIKLGGYEAALEMLQVVKEEMIILDALNYE
Ga0209645_11530513	3300025151	Marine	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDT
Ga0209654_100288623	3300025608	Marine	MKDFINDMEMIQLAINLGDYHDAMRMLQEVKEEMIILDALNYD
Ga0208162_10383594	3300025674	Aqueous	TNKTILMQDFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN
Ga0208162_10566683	3300025674	Aqueous	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYD
Ga0208162_10648582	3300025674	Aqueous	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE
Ga0208162_11196851	3300025674	Aqueous	QLHIKRYAMTDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE
Ga0208763_100120714	3300026136	Marine	MKGFISDIEMIQLVIKLGGYEDALEMLQEVKEEMIILDALNYDT
Ga0208763_10394973	3300026136	Marine	EMIQLVIKLGGYEAALEMLQVVKEEMIILDALNYE
Ga0233450_103698492	3300028115	Salt Marsh	LNRFINDLELVMLAIRNEDLEDALLMLQEIREEMIILDALNYE
Ga0307376_105382572	3300031578	Soil	MQDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE
Ga0316202_101939271	3300032277	Microbial Mat	MKRFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDALNYE
Ga0316204_103408302	3300032373	Microbial Mat	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYD
Ga0348335_094735_463_597	3300034374	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA
Ga0348336_047009_3_107	3300034375	Aqueous	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMI