Metagenome / Metatranscriptome Family F089532

Basic Information
Family ID	F089532
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	42 residues
Representative Sequence	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Number of Associated Samples	75
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	42.20 %
% of genes near scaffold ends (potentially truncated)	34.86 %
% of genes from short scaffolds (< 2000 bps)	80.73 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (33.028 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (66.972 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (87.156 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 76.74% β-sheet: 0.00% Coil/Unstructured: 23.26%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF12684	DUF3799	23.85
PF13392	HNH_3	19.27
PF08299	Bac_DnaA_C	14.68
PF01555	N6_N4_Mtase	8.26
PF02195	ParBc	8.26
PF10544	T5orf172	3.67
PF04466	Terminase_3	3.67
PF14550	Peptidase_S78_2	1.83
PF00856	SET	1.83
PF08291	Peptidase_M15_3	0.92
PF03796	DnaB_C	0.92
PF05766	NinG	0.92
PF13455	MUG113	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	14.68
COG0863	DNA modification methylase	Replication, recombination and repair [L]	8.26
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	8.26
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	8.26
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	3.67
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.92
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	52.29 %
Unclassified	root	N/A	33.03 %
cellular organisms	root	All Organisms → cellular organisms	14.68 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.68 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	9.17 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	5.50 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	9.17 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	9.17 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	5.50 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	9.17 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	9.17 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	5.50 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9.17 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.50 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	2.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	7.34 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	3.67 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	2.75 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.83 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.83 %
Rhodobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	1.83 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	7.34 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	3.67 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %
unclassified Rhodobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae	1.83 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.83 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Inhavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus	3.67 %
Dysgonomonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae	2.75 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1.83 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1.83 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %
Anaerotruncus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Nonlabens virus P12024L	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	3.67 %
Dysgonomonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas	2.75 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
Maribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter	1.83 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1.83 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %
Anaerotruncus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Nonlabens virus P12024L	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	3.67 %
unclassified Dysgonomonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas	2.75 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
unclassified Maribacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter	1.83 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1.83 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %
Anaerotruncus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	0.92 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.03 %
Unclassified	root	N/A	33.03 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	9.17 %
Nonlabens virus P12024L	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	3.67 %
Dysgonomonas sp. Marseille-P4677	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas → Dysgonomonas sp. Marseille-P4677	2.75 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.75 %
Maribacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1.83 %
Rhodobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	1.83 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.83 %
Anaerotruncus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000116\|DelMOSpr2010_c10196691	Not Available	649	Open in IMG/M
3300000116\|DelMOSpr2010_c10242403	Not Available	553	Open in IMG/M
3300001450\|JGI24006J15134_10001459	Not Available	13468	Open in IMG/M
3300001947\|GOS2218_1008191	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1428	Open in IMG/M
3300002483\|JGI25132J35274_1063651	Not Available	781	Open in IMG/M
3300002483\|JGI25132J35274_1068345	Not Available	747	Open in IMG/M
3300003409\|JGI26088J50261_1000332	Not Available	28307	Open in IMG/M
3300003409\|JGI26088J50261_1001755	Not Available	11447	Open in IMG/M
3300004457\|Ga0066224_1175202	All Organisms → Viruses → Predicted Viral	1638	Open in IMG/M
3300005239\|Ga0073579_1189330	Not Available	29227	Open in IMG/M
3300005433\|Ga0066830_10001135	All Organisms → Viruses → Predicted Viral	4565	Open in IMG/M
3300005510\|Ga0066825_10052971	All Organisms → Viruses → Predicted Viral	1444	Open in IMG/M
3300005512\|Ga0074648_1004443	Not Available	11181	Open in IMG/M
3300005613\|Ga0074649_1008290	Not Available	7870	Open in IMG/M
3300005747\|Ga0076924_1100914	All Organisms → Viruses → Predicted Viral	1371	Open in IMG/M
3300005837\|Ga0078893_10621391	All Organisms → Viruses → Predicted Viral	1339	Open in IMG/M
3300006026\|Ga0075478_10254794	Not Available	525	Open in IMG/M
3300006752\|Ga0098048_1092878	Not Available	916	Open in IMG/M
3300006752\|Ga0098048_1131228	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	750	Open in IMG/M
3300006793\|Ga0098055_1111718	All Organisms → Viruses → Predicted Viral	1064	Open in IMG/M
3300007276\|Ga0070747_1203851	Not Available	696	Open in IMG/M
3300007276\|Ga0070747_1268429	All Organisms → Viruses	590	Open in IMG/M
3300007538\|Ga0099851_1172365	Not Available	798	Open in IMG/M
3300007539\|Ga0099849_1015920	All Organisms → Viruses → Predicted Viral	3301	Open in IMG/M
3300007539\|Ga0099849_1048846	All Organisms → Viruses → Predicted Viral	1768	Open in IMG/M
3300007539\|Ga0099849_1076669	All Organisms → Viruses → Predicted Viral	1358	Open in IMG/M
3300007539\|Ga0099849_1083809	All Organisms → Viruses → Predicted Viral	1287	Open in IMG/M
3300007539\|Ga0099849_1096399	All Organisms → Viruses → Predicted Viral	1182	Open in IMG/M
3300007539\|Ga0099849_1307983	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	570	Open in IMG/M
3300007539\|Ga0099849_1313257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas → Dysgonomonas sp. Marseille-P4677	564	Open in IMG/M
3300007539\|Ga0099849_1350200	Not Available	525	Open in IMG/M
3300007542\|Ga0099846_1076928	All Organisms → Viruses → Predicted Viral	1243	Open in IMG/M
3300007542\|Ga0099846_1266752	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	592	Open in IMG/M
3300007640\|Ga0070751_1010368	All Organisms → Viruses → Predicted Viral	4764	Open in IMG/M
3300007640\|Ga0070751_1160391	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	894	Open in IMG/M
3300008012\|Ga0075480_10435291	Not Available	641	Open in IMG/M
3300010149\|Ga0098049_1066566	All Organisms → Viruses → Predicted Viral	1140	Open in IMG/M
3300010296\|Ga0129348_1084668	All Organisms → Viruses → Predicted Viral	1125	Open in IMG/M
3300010296\|Ga0129348_1131238	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas → Dysgonomonas sp. Marseille-P4677	873	Open in IMG/M
3300010297\|Ga0129345_1050088	All Organisms → Viruses → Predicted Viral	1600	Open in IMG/M
3300010297\|Ga0129345_1137427	Not Available	887	Open in IMG/M
3300010297\|Ga0129345_1214438	All Organisms → Viruses	680	Open in IMG/M
3300010297\|Ga0129345_1291887	Not Available	565	Open in IMG/M
3300010299\|Ga0129342_1153023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus	840	Open in IMG/M
3300010299\|Ga0129342_1183118	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	750	Open in IMG/M
3300010299\|Ga0129342_1254731	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas → unclassified Dysgonomonas → Dysgonomonas sp. Marseille-P4677	611	Open in IMG/M
3300010300\|Ga0129351_1099435	All Organisms → Viruses → Predicted Viral	1168	Open in IMG/M
3300010300\|Ga0129351_1132665	Not Available	989	Open in IMG/M
3300010300\|Ga0129351_1355416	Not Available	549	Open in IMG/M
3300010318\|Ga0136656_1141346	All Organisms → Viruses	827	Open in IMG/M
3300011118\|Ga0114922_11720907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	502	Open in IMG/M
3300011253\|Ga0151671_1007751	Not Available	8380	Open in IMG/M
3300011254\|Ga0151675_1023364	All Organisms → Viruses → Predicted Viral	1474	Open in IMG/M
3300012967\|Ga0129343_1122356	Not Available	550	Open in IMG/M
3300017714\|Ga0181412_1002352	Not Available	6874	Open in IMG/M
3300017719\|Ga0181390_1001910	Not Available	8921	Open in IMG/M
3300017735\|Ga0181431_1033197	All Organisms → Viruses → Predicted Viral	1183	Open in IMG/M
3300017735\|Ga0181431_1040864	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1056	Open in IMG/M
3300017749\|Ga0181392_1141866	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	705	Open in IMG/M
3300017770\|Ga0187217_1225784	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	616	Open in IMG/M
3300017781\|Ga0181423_1131389	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	971	Open in IMG/M
3300017782\|Ga0181380_1063338	All Organisms → Viruses → Predicted Viral	1309	Open in IMG/M
3300017783\|Ga0181379_1330164	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	515	Open in IMG/M
3300018080\|Ga0180433_10655391	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	784	Open in IMG/M
3300018420\|Ga0181563_10394026	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	792	Open in IMG/M
3300018420\|Ga0181563_10402751	Not Available	781	Open in IMG/M
3300018424\|Ga0181591_10724930	Not Available	697	Open in IMG/M
3300019459\|Ga0181562_10427617	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	636	Open in IMG/M
3300021335\|Ga0213867_1085394	All Organisms → Viruses → Predicted Viral	1149	Open in IMG/M
3300021373\|Ga0213865_10010955	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	5226	Open in IMG/M
3300021373\|Ga0213865_10038269	All Organisms → Viruses → Predicted Viral	2680	Open in IMG/M
3300021375\|Ga0213869_10310732	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	669	Open in IMG/M
3300021958\|Ga0222718_10101559	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1694	Open in IMG/M
3300021958\|Ga0222718_10129116	All Organisms → Viruses → Predicted Viral	1452	Open in IMG/M
3300021960\|Ga0222715_10011526	Not Available	7012	Open in IMG/M
3300021960\|Ga0222715_10228116	All Organisms → Viruses → Predicted Viral	1097	Open in IMG/M
3300021961\|Ga0222714_10358258	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	782	Open in IMG/M
3300022187\|Ga0196899_1104107	Not Available	837	Open in IMG/M
3300022201\|Ga0224503_10166807	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	709	Open in IMG/M
3300022202\|Ga0224498_10204316	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	586	Open in IMG/M
(restricted) 3300023210\|Ga0233412_10513854	All Organisms → Viruses	542	Open in IMG/M
(restricted) 3300024059\|Ga0255040_10010806	All Organisms → Viruses → Predicted Viral	3011	Open in IMG/M
3300024183\|Ga0228603_1000022	Not Available	29104	Open in IMG/M
3300024188\|Ga0228602_1087718	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	540	Open in IMG/M
3300024229\|Ga0233402_1017703	All Organisms → Viruses → Predicted Viral	1579	Open in IMG/M
3300024229\|Ga0233402_1116547	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	552	Open in IMG/M
3300024266\|Ga0228661_1013857	All Organisms → Viruses → Predicted Viral	1416	Open in IMG/M
3300024266\|Ga0228661_1029420	Not Available	996	Open in IMG/M
3300024316\|Ga0228654_1030052	Not Available	795	Open in IMG/M
(restricted) 3300024519\|Ga0255046_10130546	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1097	Open in IMG/M
(restricted) 3300024519\|Ga0255046_10131157	All Organisms → Viruses → Predicted Viral	1095	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10278675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium	847	Open in IMG/M
3300025083\|Ga0208791_1026360	All Organisms → Viruses → Predicted Viral	1129	Open in IMG/M
3300025108\|Ga0208793_1002552	Not Available	9422	Open in IMG/M
3300025141\|Ga0209756_1035044	All Organisms → Viruses → Predicted Viral	2633	Open in IMG/M
3300025151\|Ga0209645_1153051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	710	Open in IMG/M
3300025608\|Ga0209654_1002886	Not Available	11160	Open in IMG/M
3300025674\|Ga0208162_1038359	All Organisms → Viruses → Predicted Viral	1690	Open in IMG/M
3300025674\|Ga0208162_1056668	All Organisms → Viruses → Predicted Viral	1291	Open in IMG/M
3300025674\|Ga0208162_1064858	All Organisms → Viruses → Predicted Viral	1174	Open in IMG/M
3300025674\|Ga0208162_1119685	All Organisms → Viruses	757	Open in IMG/M
3300026136\|Ga0208763_1001207	All Organisms → Viruses → Predicted Viral	4721	Open in IMG/M
3300026136\|Ga0208763_1039497	Not Available	701	Open in IMG/M
3300028115\|Ga0233450_10369849	Not Available	579	Open in IMG/M
3300031578\|Ga0307376_10538257	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	751	Open in IMG/M
3300032277\|Ga0316202_10193927	Not Available	943	Open in IMG/M
3300032373\|Ga0316204_10340830	All Organisms → Viruses → Predicted Viral	1151	Open in IMG/M
3300034374\|Ga0348335_094735	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Inhavirus → Nonlabens virus P12024L	960	Open in IMG/M
3300034375\|Ga0348336_047009	All Organisms → Viruses → Predicted Viral	1819	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.08%
Terrestrial	Environmental → Terrestrial	0.92%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	96.33%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.75%
Soil	Environmental → Terrestrial → Soil	0.92%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	50.46%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.60%
Strait	Environmental → Aquatic → Marine → Strait	11.01%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	8.26%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.50%
Inlet	Environmental → Aquatic → Marine → Inlet	1.83%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.83%
Sediment	Environmental → Aquatic → Marine → Sediment	1.83%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.83%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.92%
Clay	Environmental → Terrestrial → Soil → Clay	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	48.62%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	14.68%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	11.01%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.50%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.59%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.83%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.83%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.83%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.92%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.92%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.92%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.92%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	22.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	13.76%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	11.93%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	11.01%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	10.09%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	4.59%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.59%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.67%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.83%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	1.83%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.83%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.83%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.92%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.92%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.92%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.92%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.92%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.92%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.92%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001947	Marine microbial communities from the Gulf of Maine, Canada - GS002	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300003409	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA	Environmental	Open in IMG/M
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300005433	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B	Environmental	Open in IMG/M
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300005613	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment	Environmental	Open in IMG/M
3300005747	Seawater microbial communities from Vineyard Sound, MA, USA - control T14	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300010318	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300011253	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate	Environmental	Open in IMG/M
3300011254	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02	Environmental	Open in IMG/M
3300012967	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017749	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15	Environmental	Open in IMG/M
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental	Open in IMG/M
3300017781	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental	Open in IMG/M
3300018080	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019459	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental	Open in IMG/M
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental	Open in IMG/M
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300022201	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_21	Environmental	Open in IMG/M
3300022202	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21	Environmental	Open in IMG/M
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental	Open in IMG/M
3300024059 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2	Environmental	Open in IMG/M
3300024183	Seawater microbial communities from Monterey Bay, California, United States - 3D	Environmental	Open in IMG/M
3300024188	Seawater microbial communities from Monterey Bay, California, United States - 2D	Environmental	Open in IMG/M
3300024229	Seawater microbial communities from Monterey Bay, California, United States - 54D	Environmental	Open in IMG/M
3300024266	Seawater microbial communities from Monterey Bay, California, United States - 75D	Environmental	Open in IMG/M
3300024316	Seawater microbial communities from Monterey Bay, California, United States - 66D	Environmental	Open in IMG/M
3300024519 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27	Environmental	Open in IMG/M
3300024520 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1	Environmental	Open in IMG/M
3300025083	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025608	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300026136	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes)	Environmental	Open in IMG/M
3300028115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (spades assembly)	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental	Open in IMG/M
3300032373	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2	Environmental	Open in IMG/M
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089532

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_101966913	3300000116	Marine	ETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
DelMOSpr2010_102424032	3300000116	Marine	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYD*
JGI24006J15134_1000145910	3300001450	Marine	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDT*
GOS2218_10081912	3300001947	Marine	TIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
JGI25132J35274_10636512	3300002483	Marine	MKGFISDIEMIQLVIKLGGYEDALEMLQEVKEEMIILDALNYEYVRPH*
JGI25132J35274_10683452	3300002483	Marine	VKKYGNGTESNRKKQVMKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDT
JGI26088J50261_100033227	3300003409	Marine	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE*
JGI26088J50261_100175512	3300003409	Marine	MKDFINDMEMIQLAINLGDYHDAMRMLQEVKEEMIILDALNYD*
Ga0066224_11752022	3300004457	Marine	MKGFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDLLNYD*
Ga0073579_118933044	3300005239	Marine	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0066830_100011351	3300005433	Marine	MKGFISDIEMIQLVIKLGGYEDALEMLQEVKEEMIILDALNYDA*
Ga0066825_100529713	3300005510	Marine	MKGFISDIEMIQLVIKLGGYEAALEMLQVVKEEMIILDALNYE*
Ga0074648_100444316	3300005512	Saline Water And Sediment	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYD*
Ga0074649_100829020	3300005613	Saline Water And Sediment	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYD*
Ga0076924_11009142	3300005747	Marine	MIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0078893_106213913	3300005837	Marine Surface Water	LKRFISDIETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0075478_102547942	3300006026	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA*
Ga0098048_10928782	3300006752	Marine	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMII
Ga0098048_11312282	3300006752	Marine	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0098055_11117181	3300006793	Marine	SDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0070747_12038511	3300007276	Aqueous	HTISMKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYD*
Ga0070747_12684291	3300007276	Aqueous	RQLHIKRYAMKRFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDALNYE*
Ga0099851_11723651	3300007538	Aqueous	MIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA*
Ga0099849_10159202	3300007539	Aqueous	LKDFINDMEMIQLAIKLGDYHDAMRMLQEVKEEMIILDALNYE*
Ga0099849_10488461	3300007539	Aqueous	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN*
Ga0099849_10766692	3300007539	Aqueous	LKDFINDMEMIMLAIKLGDYHDAMRMLQEVKEEMIILDALNYE*
Ga0099849_10838092	3300007539	Aqueous	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYD*
Ga0099849_10963992	3300007539	Aqueous	MTDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0099849_13079831	3300007539	Aqueous	NDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALNYE*
Ga0099849_13132571	3300007539	Aqueous	EIILKDFINDMEMIMLAIKLGDYHDAMRMLQEVKEEMIILDALNYE*
Ga0099849_13502001	3300007539	Aqueous	RYAMTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0099846_10769282	3300007542	Aqueous	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0099846_12667522	3300007542	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNY
Ga0070751_10103688	3300007640	Aqueous	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDA*
Ga0070751_11603912	3300007640	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0075480_104352912	3300008012	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEIIILDALNYDA*
Ga0098049_10665663	3300010149	Marine	LKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0129348_10846682	3300010296	Freshwater To Marine Saline Gradient	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE*
Ga0129348_11312381	3300010296	Freshwater To Marine Saline Gradient	LINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0129345_10500883	3300010297	Freshwater To Marine Saline Gradient	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALNYE*
Ga0129345_11374272	3300010297	Freshwater To Marine Saline Gradient	MQDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYD*
Ga0129345_12144381	3300010297	Freshwater To Marine Saline Gradient	MIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE*
Ga0129345_12918873	3300010297	Freshwater To Marine Saline Gradient	LHIKRYAMTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0129342_11530232	3300010299	Freshwater To Marine Saline Gradient	LTDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA*
Ga0129342_11831181	3300010299	Freshwater To Marine Saline Gradient	AMTEFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALNYE*
Ga0129342_12547311	3300010299	Freshwater To Marine Saline Gradient	TDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0129351_10994351	3300010300	Freshwater To Marine Saline Gradient	NDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN*
Ga0129351_11326651	3300010300	Freshwater To Marine Saline Gradient	MQDLINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN
Ga0129351_13554161	3300010300	Freshwater To Marine Saline Gradient	DLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE*
Ga0136656_11413461	3300010318	Freshwater To Marine Saline Gradient	IEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE*
Ga0114922_117209071	3300011118	Deep Subsurface	KRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE*
Ga0151671_100775113	3300011253	Marine	MKGFISDIEIVMMAIKLGDYEDALEILQAVKEEMIILDLLNYD*
Ga0151675_10233642	3300011254	Marine	MKGFISDIEIVMMAIKLGDYEDALEILQAVKEEMIILDLLNYE*
Ga0129343_11223562	3300012967	Aqueous	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA*
Ga0181412_100235218	3300017714	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDA
Ga0181390_100191019	3300017719	Seawater	MKRFISDIEMIQLAIKLGDYEDALEMLQEVKEEMIIKEDKRLMIILDALNYE
Ga0181431_10331972	3300017735	Seawater	MKRFISDMETIQLAIKLGDYEDALQMLQEVKEEMIILDALNYDA
Ga0181431_10408642	3300017735	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEIIILDALNYE
Ga0181392_11418662	3300017749	Seawater	METIQLAIKLGDYEDALQMLQEVKEEMIILDALNYDA
Ga0187217_12257841	3300017770	Seawater	ISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0181423_11313891	3300017781	Seawater	MIDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE
Ga0181380_10633383	3300017782	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDVLNYE
Ga0181379_13301641	3300017783	Seawater	AIKLGDYEDALEMLQEVKEEMIIKEDKRLMIILDALNYE
Ga0180433_106553912	3300018080	Hypersaline Lake Sediment	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE
Ga0181563_103940264	3300018420	Salt Marsh	ILNRFINDLELVMLAIRNEDLEDALLMLQEIREEMIILDALNYE
Ga0181563_104027511	3300018420	Salt Marsh	FINDLELVMLAIRNEDLEDALLMLQEIREEMIILDALNYE
Ga0181591_107249302	3300018424	Salt Marsh	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA
Ga0181562_104276173	3300019459	Salt Marsh	MTRFINDLELVMLAIRNEDLEDALLMLQEIREEMIILDALNYE
Ga0213867_10853942	3300021335	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYD
Ga0213865_1001095513	3300021373	Seawater	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN
Ga0213865_100382693	3300021373	Seawater	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0213869_103107322	3300021375	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0222718_101015592	3300021958	Estuarine Water	MTDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE
Ga0222718_101291163	3300021958	Estuarine Water	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIIKEDKRLMIILDALNYDA
Ga0222715_100115263	3300021960	Estuarine Water	MKGFISDIEMIQLVIKLGGYEDALEMLQEVKEEMIILDALNYE
Ga0222715_102281162	3300021960	Estuarine Water	MTEFINDIETIMLAIKLGDYQDALTMLQEVKEEMIILDALNYD
Ga0222714_103582582	3300021961	Estuarine Water	MTEFINDIETIMLAIKLGDYQDALIMLQEVKEEMIILDALNYD
Ga0196899_11041074	3300022187	Aqueous	TIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDA
Ga0224503_101668072	3300022201	Sediment	MKRFISDMETIQLAIKLGDYYDALQMLQEVKEEMIIKEDKRLMIILDALNYE
Ga0224498_102043162	3300022202	Sediment	MKGFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDALNYE
(restricted) Ga0233412_105138542	3300023210	Seawater	MKRFISDMETIQLAIKLGDYEDALQMLQEVKEEMIILDALNYE
(restricted) Ga0255040_100108064	3300024059	Seawater	MKGFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDLFNYE
Ga0228603_100002216	3300024183	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDK
Ga0228602_10877181	3300024188	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALN
Ga0233402_10177031	3300024229	Seawater	KRHTMKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0233402_11165471	3300024229	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIIL
Ga0228661_10138575	3300024266	Seawater	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDAL
Ga0228661_10294201	3300024266	Seawater	ISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDK
Ga0228654_10300521	3300024316	Seawater	KRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDK
(restricted) Ga0255046_101305463	3300024519	Seawater	MKGFISDIEIVMMAIKLGDYEDALEILQAVKEEMIILDLLNYD
(restricted) Ga0255046_101311572	3300024519	Seawater	MKGFISDMEIVMMAIKLGDYEDALEILQAVKEEMIILDLLNYD
(restricted) Ga0255047_102786752	3300024520	Seawater	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE
Ga0208791_10263601	3300025083	Marine	IILMKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0208793_10025521	3300025108	Marine	SDMETIQLAIKLGDYEDALEMLQEVKEEMIILDALNYE
Ga0209756_10350442	3300025141	Marine	MKGFISDIEMIQLVIKLGGYEAALEMLQVVKEEMIILDALNYE
Ga0209645_11530513	3300025151	Marine	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYDT
Ga0209654_100288623	3300025608	Marine	MKDFINDMEMIQLAINLGDYHDAMRMLQEVKEEMIILDALNYD
Ga0208162_10383594	3300025674	Aqueous	TNKTILMQDFINDIEMIQLAIKLGDYYDALQMLQEVKEELILYDALN
Ga0208162_10566683	3300025674	Aqueous	MQDFINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYD
Ga0208162_10648582	3300025674	Aqueous	MTEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE
Ga0208162_11196851	3300025674	Aqueous	QLHIKRYAMTDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYE
Ga0208763_100120714	3300026136	Marine	MKGFISDIEMIQLVIKLGGYEDALEMLQEVKEEMIILDALNYDT
Ga0208763_10394973	3300026136	Marine	EMIQLVIKLGGYEAALEMLQVVKEEMIILDALNYE
Ga0233450_103698492	3300028115	Salt Marsh	LNRFINDLELVMLAIRNEDLEDALLMLQEIREEMIILDALNYE
Ga0307376_105382572	3300031578	Soil	MQDLINDIEMIQLAIKLGDYYDALQMLQEVKEEMLILDALNYE
Ga0316202_101939271	3300032277	Microbial Mat	MKRFISDMETIQLAIKLGDYEEALEMLQEVKEEMIILDALNYE
Ga0316204_103408302	3300032373	Microbial Mat	METIQLAIKLGDYEDALEMLQEVKEEMIILDALNYD
Ga0348335_094735_463_597	3300034374	Aqueous	MQEFINDIEMIQLAIKLGDYYDALQMLQEVKEEMIILDALNYDA
Ga0348336_047009_3_107	3300034375	Aqueous	MKRFISDMETIQLAIKLGDYEDALEMLQEVKEEMI

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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