Metagenome / Metatranscriptome Family F089474

Basic Information
Family ID	F089474
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	LHRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNP
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.50 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Bacteria (99.083 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (39.450 % of family members)
Environment Ontology (ENVO)	Unclassified (45.872 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.890 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.56% β-sheet: 0.00% Coil/Unstructured: 44.44%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF16363	GDP_Man_Dehyd	87.16
PF01370	Epimerase	10.09
PF02655	ATP-grasp_3	0.92
PF09913	DUF2142	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.50 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	5.50 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.50 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5.50 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	5.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	5.50 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.83 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	5.50 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.83 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	5.50 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1.83 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	5.50 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples	1.83 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	5.50 %
uncultured Nocardioides sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples → uncultured Nocardioides sp.	1.83 %
Unclassified	root	N/A	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001333\|A21PFW6_1036979	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300001537\|A2065W1_11010551	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300004081\|Ga0063454_101960188	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300004643\|Ga0062591_100229776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1394	Open in IMG/M
3300005440\|Ga0070705_101057184	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005458\|Ga0070681_11005554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300005543\|Ga0070672_101139135	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300005552\|Ga0066701_10740856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	588	Open in IMG/M
3300005561\|Ga0066699_11187752	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005937\|Ga0081455_10657378	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300006163\|Ga0070715_10127546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1220	Open in IMG/M
3300006237\|Ga0097621_101828913	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300006797\|Ga0066659_11870474	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006800\|Ga0066660_11405603	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300006871\|Ga0075434_102076818	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300009137\|Ga0066709_100007033	All Organisms → cellular organisms → Bacteria	9643	Open in IMG/M
3300009553\|Ga0105249_11352361	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300010084\|Ga0127461_1075245	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300010086\|Ga0127496_1004744	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300010087\|Ga0127492_1079883	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010092\|Ga0127468_1101104	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300010093\|Ga0127490_1012348	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300010095\|Ga0127475_1024643	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300010099\|Ga0127450_1065245	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300010104\|Ga0127446_1105168	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300010112\|Ga0127458_1108123	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300010117\|Ga0127449_1142021	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300010119\|Ga0127452_1107555	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300010122\|Ga0127488_1164910	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300010128\|Ga0127486_1013152	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300010140\|Ga0127456_1220943	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300010142\|Ga0127483_1144298	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300010145\|Ga0126321_1245184	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300010359\|Ga0126376_10542687	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1086	Open in IMG/M
3300011106\|Ga0151489_1274728	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300011998\|Ga0120114_1047634	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300012189\|Ga0137388_10683167	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300012198\|Ga0137364_11318238	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012211\|Ga0137377_10004760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10735	Open in IMG/M
3300012224\|Ga0134028_1035675	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300012224\|Ga0134028_1179134	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300012358\|Ga0137368_10245815	Not Available	1239	Open in IMG/M
3300012359\|Ga0137385_11422191	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300012374\|Ga0134039_1034891	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300012379\|Ga0134058_1147549	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300012383\|Ga0134033_1238443	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300012385\|Ga0134023_1038216	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	626	Open in IMG/M
3300012385\|Ga0134023_1120780	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300012386\|Ga0134046_1248134	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300012389\|Ga0134040_1107668	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300012390\|Ga0134054_1232325	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300012391\|Ga0134035_1112509	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300012393\|Ga0134052_1187286	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300012395\|Ga0134044_1001684	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300012395\|Ga0134044_1069057	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300012395\|Ga0134044_1076838	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012398\|Ga0134051_1356249	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300012399\|Ga0134061_1068922	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300012399\|Ga0134061_1347142	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300012400\|Ga0134048_1280158	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300012402\|Ga0134059_1203222	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300012402\|Ga0134059_1224194	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300012402\|Ga0134059_1370348	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300012403\|Ga0134049_1070968	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300012407\|Ga0134050_1017338	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300012407\|Ga0134050_1062347	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300012410\|Ga0134060_1358428	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300012469\|Ga0150984_104108164	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300012469\|Ga0150984_108577099	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	820	Open in IMG/M
3300012898\|Ga0157293_10094943	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300012918\|Ga0137396_10778671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples → uncultured Nocardioides sp.	704	Open in IMG/M
3300012929\|Ga0137404_10796914	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300012972\|Ga0134077_10458287	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300012985\|Ga0164308_10479627	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1036	Open in IMG/M
3300015359\|Ga0134085_10453268	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300015371\|Ga0132258_10667560	All Organisms → cellular organisms → Bacteria	2615	Open in IMG/M
3300019255\|Ga0184643_1129421	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300019269\|Ga0184644_1024159	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300019279\|Ga0184642_1097232	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300019279\|Ga0184642_1724738	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300019875\|Ga0193701_1012945	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300020000\|Ga0193692_1116612	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300020001\|Ga0193731_1117839	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300021080\|Ga0210382_10356240	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300025911\|Ga0207654_11008058	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300025916\|Ga0207663_10926118	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	697	Open in IMG/M
3300026095\|Ga0207676_10429480	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300027748\|Ga0209689_1346095	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300028711\|Ga0307293_10282614	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300028713\|Ga0307303_10185350	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300028718\|Ga0307307_10307006	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300028791\|Ga0307290_10345879	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300028793\|Ga0307299_10274303	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300028796\|Ga0307287_10192057	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300028802\|Ga0307503_10609629	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300028807\|Ga0307305_10275205	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300028807\|Ga0307305_10410417	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300028811\|Ga0307292_10075033	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300028811\|Ga0307292_10204006	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300028814\|Ga0307302_10120172	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300028814\|Ga0307302_10623897	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300028881\|Ga0307277_10249260	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300028884\|Ga0307308_10434897	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300030785\|Ga0102757_11280384	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300030903\|Ga0308206_1024942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples → uncultured Nocardioides sp.	1043	Open in IMG/M
3300030993\|Ga0308190_1022892	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300031058\|Ga0308189_10414573	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031094\|Ga0308199_1129381	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300031366\|Ga0307506_10276265	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.83%
Host-Associated	Host-Associated	9.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.32%
Plants	Host-Associated → Plants	9.17%
Aquatic	Environmental → Aquatic	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.32%
Freshwater	Environmental → Aquatic → Freshwater	5.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.59%
Loam	Environmental → Terrestrial → Soil → Loam	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	70.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	39.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.42%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010084	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010086	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010087	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010092	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010093	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010095	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010099	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010104	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010117	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010119	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010122	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012224	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012374	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012383	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012385	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012386	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012389	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012391	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012395	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012403	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012407	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030785	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A21PFW6_10369791	3300001333	Permafrost	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDSMTLHGN
A2065W1_110105511	3300001537	Permafrost	LPRRIGVAAAIVFVAAVLCVPAAEAKAHMLIGIQDDAMTLRGNPTFTFPTLKQLR
Ga0063454_1019601881	3300004081	Soil	LHKRVGVFAAIVFLAAALSVPAAQAKRHMLIGLQDDAMTLFGN
Ga0062591_1002297761	3300004643	Soil	LFRRIGVAAAIILVAAGLAVPAAQAKAHMLVGLQDDAMTLRGNPTFTFSTLK
Ga0070705_1010571841	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LPRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNPTFTFST
Ga0070681_110055541	3300005458	Corn Rhizosphere	LRRRMGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMALHGNPQFTFSTLKS
Ga0070672_1011391352	3300005543	Miscanthus Rhizosphere	LRRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPS
Ga0066701_107408562	3300005552	Soil	LHRRFGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAM
Ga0066699_111877521	3300005561	Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMVLRGNPIFTF
Ga0081455_106573782	3300005937	Tabebuia Heterophylla Rhizosphere	LRRRIGVIVATALVAVGLCVPTAQAQRRLLVGMQDDAMVLRGDPTFTFR
Ga0070715_101275462	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNPQFTFST
Ga0097621_1018289132	3300006237	Miscanthus Rhizosphere	LHRRLGVLAAIVFLAAALSVPAAQAKRHMLIGLQDDAMTLFGNPTFTFR
Ga0066659_118704741	3300006797	Soil	LPRRLGVLAAIVFAAAGLCVPAASAKAHMLVGIQDDALT
Ga0066660_114056032	3300006800	Soil	VALLVAAGLSAPAATASRHMLVGIQDEANTLYGNPDQ
Ga0075434_1020768181	3300006871	Populus Rhizosphere	LHRRIGVVAATVLVAAGLCVPAATAARHLLVGIQDDAMVLRGNPTFTFGMLKQLR
Ga0066709_1000070331	3300009137	Grasslands Soil	LHRRFGVFAAIVLVSAGLSVPAAQAQRHLLVGIQDDAM
Ga0105249_113523612	3300009553	Switchgrass Rhizosphere	MGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNPQFTFSTLKSL
Ga0127461_10752451	3300010084	Grasslands Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTFT
Ga0127496_10047441	3300010086	Grasslands Soil	LRRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGN
Ga0127492_10798832	3300010087	Grasslands Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTVTFQ
Ga0127468_11011042	3300010092	Grasslands Soil	LRRRVGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDPTFT
Ga0127490_10123481	3300010093	Grasslands Soil	LHKRVGVFAAIVFLAAALSVPAAQAKRHMLIGLQDD
Ga0127475_10246431	3300010095	Grasslands Soil	LRRRVGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNP
Ga0127450_10652451	3300010099	Grasslands Soil	LAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMVLRGNPQFTFST
Ga0127446_11051682	3300010104	Grasslands Soil	LRRRVGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDP
Ga0127458_11081232	3300010112	Grasslands Soil	LRRSLGVLAAIILFAAGLSVPAAQAKQHMLVGLQDDAMVLY
Ga0127449_11420212	3300010117	Grasslands Soil	LPRRIGVAAAIVFVAAVLCVPVAQAKAHMLVGIQDDAMTLHGNPT
Ga0127452_11075552	3300010119	Grasslands Soil	LFRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTVTF
Ga0127488_11649102	3300010122	Grasslands Soil	LAAIVLVAAGFAVPAAQAQRHLLVGIQDDAMVLRGNPQ
Ga0127486_10131522	3300010128	Grasslands Soil	LPRRLGVFAAIVLVVAGLSVPAAQAKRHLLVGIQDDSMTLRGNP
Ga0127456_12209432	3300010140	Grasslands Soil	LPRRIGVAAAIVFVAAVLYVPVAQAKAHMLVGIQDDAMTLHGNPTFTFPTLK
Ga0127483_11442982	3300010142	Grasslands Soil	LHKRVGVFAAIVFLAAALSVPAAQAKRHMLIGLQD
Ga0126321_12451842	3300010145	Soil	LPKRLGVLAAIVLLAAGLSVPAAQAKRGMLIGIQDDAMVLFGN
Ga0126376_105426871	3300010359	Tropical Forest Soil	LPKNIGVFAATVFLAAALAVPAAQAKNHMLVGMQDD
Ga0151489_12747282	3300011106	Soil	LRRRIGVAAAIVLVAASLAEPAAQAKQHMLVGIQDDAMTL
Ga0120114_10476342	3300011998	Permafrost	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDSMTLHGNPTFTFPTL
Ga0137388_106831671	3300012189	Vadose Zone Soil	LPRRIGVAAAIVFVAAVLCVPAAEAKAHMLIGIQDDAMTLRGDPTFTFPTLKQLRT
Ga0137364_113182382	3300012198	Vadose Zone Soil	VVAAAIVLIAAGLAVPAAQAKAHMLVGIQDDSMTLHGNPTFTFTTLK
Ga0137377_100047601	3300012211	Vadose Zone Soil	LAAIVLVAAGLCVPAASAKAHMLVGIQDDALTLHGNPTFTFPTLKQ
Ga0134028_10356751	3300012224	Grasslands Soil	LHRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPTFTF
Ga0134028_11791341	3300012224	Grasslands Soil	LPRRIGVAAAIAFAAAGLCVPVASAKAHMLVGIQD
Ga0137368_102458152	3300012358	Vadose Zone Soil	LPRRIGVFAAIVLVAAGLCVPAAQAQRHLLVGMQDDSMA
Ga0137385_114221911	3300012359	Vadose Zone Soil	LPRRIGVAAAIVFVAAGLCVPVASAKAHMLVGIQDDAMTLRGNPTFTFPTLKQL
Ga0134039_10348912	3300012374	Grasslands Soil	LRRRVGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDPTFTFPILK
Ga0134058_11475491	3300012379	Grasslands Soil	LRRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDA
Ga0134033_12384432	3300012383	Grasslands Soil	LRRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNP
Ga0134023_10382161	3300012385	Grasslands Soil	LHRRFGVFAAIVFVAAALSVPAAQAKNHMLIGMQDDA
Ga0134023_11207802	3300012385	Grasslands Soil	LAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMVLRGNPQFTFSTLKQLR
Ga0134046_12481342	3300012386	Grasslands Soil	LLRRTAFIAALVLVAAGLAIPAAQAKQHMLVGIQDDAMTLRGNPTV
Ga0134040_11076681	3300012389	Grasslands Soil	VVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGNPTFTFSTLK
Ga0134054_12323251	3300012390	Grasslands Soil	LFRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTL
Ga0134035_11125091	3300012391	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGNPTFTFSTLKQLR
Ga0134052_11872862	3300012393	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNPQFT
Ga0134044_10016841	3300012395	Grasslands Soil	LRRSLGVLAAIILLAAGLSVPAAQAKQHMLVGLQDDAMVL
Ga0134044_10690571	3300012395	Grasslands Soil	LRKRIGVFAAIALLAAALSVPAAQAKRHMLIGLQDDAMVL
Ga0134044_10768382	3300012395	Grasslands Soil	LRRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNPTFTFSTLKQ
Ga0134051_13562492	3300012398	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDPTFTFPILKQLR
Ga0134061_10689222	3300012399	Grasslands Soil	LRRRIGVFAAIFFLAAGLSVPAAQAKRHMLIGIQDD
Ga0134061_13471422	3300012399	Grasslands Soil	LPRRIGVAAAIVFVAAVLCVPVAQAKAHMLVGIQD
Ga0134048_12801582	3300012400	Grasslands Soil	LHRRFGVFAAIVFVAAALSVPAAQAKNHMLIGMQDD
Ga0134059_12032221	3300012402	Grasslands Soil	LHRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDATVLHGNPTFTF
Ga0134059_12241942	3300012402	Grasslands Soil	LRRQLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDD
Ga0134059_13703482	3300012402	Grasslands Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLIGIQDDAMTLRGNP
Ga0134049_10709681	3300012403	Grasslands Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLIGIQDDAM
Ga0134050_10173382	3300012407	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDPTFTFPILKQL
Ga0134050_10623471	3300012407	Grasslands Soil	LPRRIGVAAAIVFVAAVLCVPVAQAKAHMLVGIQDDAMTLH
Ga0134060_13584282	3300012410	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNSQFTFS
Ga0150984_1041081641	3300012469	Avena Fatua Rhizosphere	LLRRAGILTAIALVVVGLAVPAAQAKRHMLVGIQDD
Ga0150984_1085770991	3300012469	Avena Fatua Rhizosphere	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAM
Ga0157293_100949432	3300012898	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTL
Ga0137396_107786711	3300012918	Vadose Zone Soil	LPSRIGVAAAIVFVAASLCVPVASAKAHMLVGIQDDAMTLQGNPT
Ga0137404_107969142	3300012929	Vadose Zone Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGN
Ga0134077_104582872	3300012972	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLR
Ga0164308_104796271	3300012985	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNPQ
Ga0134085_104532682	3300015359	Grasslands Soil	LAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPAFTFGTLK
Ga0132258_106675604	3300015371	Arabidopsis Rhizosphere	LPKRIGVILATALAAVGLCVPAAQAQRHLLVGLQDD
Ga0184643_11294212	3300019255	Groundwater Sediment	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQD
Ga0184644_10241592	3300019269	Groundwater Sediment	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNP
Ga0184642_10972321	3300019279	Groundwater Sediment	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLH
Ga0184642_17247382	3300019279	Groundwater Sediment	LRRRIGVAAAIVLVAAGLAVPAAQAKPHMLVGIQDDAMTLRGNPTFTFGTLK
Ga0193701_10129451	3300019875	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGTPTFTFQ
Ga0193692_11166121	3300020000	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHG
Ga0193731_11178392	3300020001	Soil	LPRRIGVAAAIVFVAASLCVPAASAKAHMLVGIQD
Ga0210382_103562402	3300021080	Groundwater Sediment	LLRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGN
Ga0207654_110080581	3300025911	Corn Rhizosphere	MGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNP
Ga0207663_109261182	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMALHGNPQFTFST
Ga0207676_104294803	3300026095	Switchgrass Rhizosphere	MGVAAAIVLVAEGLAVPAAQAKQHMLVGIQDDAMTLHG
Ga0209689_13460952	3300027748	Soil	LPRRIGVAAAIVFVAAGLCVPVASAKAHMLVGIQDDAMTLHGNPTFTFPTLKQL
Ga0307293_102826141	3300028711	Soil	LFRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPTFTFSTLK
Ga0307303_101853501	3300028713	Soil	LLRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDSMTLRGNPTFTFSTLK
Ga0307307_103070061	3300028718	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTLT
Ga0307290_103458791	3300028791	Soil	LFRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDD
Ga0307299_102743032	3300028793	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTFTFQTLK
Ga0307287_101920571	3300028796	Soil	LRKRIGVFAAIALLAAALSVPAAQAKRHMLIGLQDDAMVLF
Ga0307503_106096292	3300028802	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPSFTFP
Ga0307305_102752051	3300028807	Soil	LFRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPTFTF
Ga0307305_104104172	3300028807	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAM
Ga0307292_100750331	3300028811	Soil	LFRRIGVAAAIVFVAAGLSVPAAQAKAHMLVGIQDDAMTL
Ga0307292_102040061	3300028811	Soil	LPRRIGVAAAIVLVAAGLAVPAASAKAHMLIGIQDDAMT
Ga0307302_101201721	3300028814	Soil	LPRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGLQDDAMTLRGNPTSTF
Ga0307302_106238972	3300028814	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNTTFTFQT
Ga0307277_102492602	3300028881	Soil	LPRRIGVAAAIVLVAAGLAVPAASAKAHMLVGIQDDA
Ga0307308_104348972	3300028884	Soil	LRRRIGVAAAIVFVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPT
Ga0102757_112803842	3300030785	Soil	LHRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNP
Ga0308206_10249422	3300030903	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNPQFT
Ga0308190_10228921	3300030993	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMALHGNP
Ga0308189_104145732	3300031058	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRG
Ga0308199_11293811	3300031094	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTFTF
Ga0307506_102762652	3300031366	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089474

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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