Metagenome / Metatranscriptome Family F089458

Basic Information
Family ID	F089458
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	PREYARMQSLGRPGSILAKTLIIHHEPTSRITVILVPETLGF
Number of Associated Samples	103
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.17 %
% of genes near scaffold ends (potentially truncated)	88.99 %
% of genes from short scaffolds (< 2000 bps)	80.73 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Bacteria (82.569 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (14.679 % of family members)
Environment Ontology (ENVO)	Unclassified (33.945 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.706 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.43% β-sheet: 31.43% Coil/Unstructured: 57.14%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04964	Flp_Fap	12.84
PF00440	TetR_N	5.50
PF00483	NTP_transferase	4.59
PF00583	Acetyltransf_1	3.67
PF00903	Glyoxalase	2.75
PF11141	DUF2914	2.75
PF00392	GntR	2.75
PF04672	Methyltransf_19	2.75
PF12681	Glyoxalase_2	2.75
PF02589	LUD_dom	1.83
PF00210	Ferritin	1.83
PF03176	MMPL	1.83
PF08818	DUF1801	1.83
PF00381	PTS-HPr	0.92
PF02769	AIRS_C	0.92
PF00920	ILVD_EDD	0.92
PF01988	VIT1	0.92
PF08240	ADH_N	0.92
PF08044	DUF1707	0.92
PF13649	Methyltransf_25	0.92
PF07676	PD40	0.92
PF13271	DUF4062	0.92
PF13560	HTH_31	0.92
PF13673	Acetyltransf_10	0.92
PF02803	Thiolase_C	0.92
PF00248	Aldo_ket_red	0.92
PF12706	Lactamase_B_2	0.92
PF00872	Transposase_mut	0.92
PF02073	Peptidase_M29	0.92
PF04069	OpuAC	0.92
PF00205	TPP_enzyme_M	0.92
PF13556	HTH_30	0.92
PF01569	PAP2	0.92
PF12802	MarR_2	0.92
PF00293	NUDIX	0.92
PF00731	AIRC	0.92
PF13561	adh_short_C2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	12.84
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.83
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	1.83
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	1.83
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.83
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.83
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.92
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.92
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.92
COG1925	HPr or related phosphotransfer protein	Signal transduction mechanisms [T]	0.92
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	0.92
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.49 %
Unclassified	root	N/A	16.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.49 %
Unclassified	root	N/A	16.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.57 %
Unclassified	root	N/A	16.51 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.92 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.04 %
Unclassified	root	N/A	16.51 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	6.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.75 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.92 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	16.51 %
Unclassified	root	N/A	16.51 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	3.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.75 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	0.92 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	16.51 %
Unclassified	root	N/A	16.51 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.01 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	0.92 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.92 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.51 %
Unclassified	root	N/A	16.51 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.67 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.83 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.92 %
Thermithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Thermithiobacillaceae	0.92 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.92 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	0.92 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.92 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.51 %
Unclassified	root	N/A	16.51 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.92 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.92 %
Methanomicrobiaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	0.92 %
Thermithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Thermithiobacillaceae → Thermithiobacillus	0.92 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.51 %
Unclassified	root	N/A	16.51 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.83 %
Thermithiobacillus tepidarius	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Thermithiobacillaceae → Thermithiobacillus → Thermithiobacillus tepidarius	0.92 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.92 %
Methanoculleus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus	0.92 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.51 %
Unclassified	root	N/A	16.51 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.83 %
unclassified Methanoculleus	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus	0.92 %
Amycolatopsis acididurans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis acididurans	0.92 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.92 %
Thermithiobacillus tepidarius	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Thermithiobacillaceae → Thermithiobacillus → Thermithiobacillus tepidarius	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.51 %
Unclassified	root	N/A	16.51 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.67 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.83 %
Methanoculleus sp. MH98A	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	0.92 %
Amycolatopsis acididurans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis acididurans	0.92 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.92 %
Thermithiobacillus tepidarius	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Thermithiobacillaceae → Thermithiobacillus → Thermithiobacillus tepidarius	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908038\|B3_all_c_ConsensusfromContig53073	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	806	Open in IMG/M
2199352024\|deeps__Contig_156771	All Organisms → cellular organisms → Bacteria	2323	Open in IMG/M
3300000789\|JGI1027J11758_11755484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300001664\|P5cmW16_1013262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1581	Open in IMG/M
3300002347\|JGIcombinedJ26865_1068597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	567	Open in IMG/M
3300004013\|Ga0055465_10253021	Not Available	594	Open in IMG/M
3300004633\|Ga0066395_10699560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	601	Open in IMG/M
3300005332\|Ga0066388_102787436	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	893	Open in IMG/M
3300005334\|Ga0068869_100836137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300005343\|Ga0070687_100242751	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300005354\|Ga0070675_100408634	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300005364\|Ga0070673_100828177	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300005436\|Ga0070713_100128255	All Organisms → cellular organisms → Bacteria	2234	Open in IMG/M
3300005436\|Ga0070713_100157469	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300005437\|Ga0070710_10021806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3343	Open in IMG/M
3300005468\|Ga0070707_101733747	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005539\|Ga0068853_102490075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300005564\|Ga0070664_101188162	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300005577\|Ga0068857_102375290	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	521	Open in IMG/M
3300005614\|Ga0068856_100160910	All Organisms → cellular organisms → Bacteria	2255	Open in IMG/M
3300005764\|Ga0066903_106925281	Not Available	588	Open in IMG/M
3300005764\|Ga0066903_108206429	Not Available	534	Open in IMG/M
3300005843\|Ga0068860_100236239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1777	Open in IMG/M
3300006028\|Ga0070717_11456763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	621	Open in IMG/M
3300006059\|Ga0075017_100453210	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	968	Open in IMG/M
3300006162\|Ga0075030_101122447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	618	Open in IMG/M
3300006163\|Ga0070715_10438551	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300006163\|Ga0070715_10839271	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300006173\|Ga0070716_100023340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3279	Open in IMG/M
3300006175\|Ga0070712_100868463	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300006804\|Ga0079221_11419918	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	553	Open in IMG/M
3300006806\|Ga0079220_10004559	All Organisms → cellular organisms → Bacteria	4865	Open in IMG/M
3300006954\|Ga0079219_12214432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Thermithiobacillaceae → Thermithiobacillus → Thermithiobacillus tepidarius	529	Open in IMG/M
3300007788\|Ga0099795_10304373	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300009036\|Ga0105244_10417277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	617	Open in IMG/M
3300009038\|Ga0099829_11751471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	509	Open in IMG/M
3300009089\|Ga0099828_10841235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	821	Open in IMG/M
3300009090\|Ga0099827_11921714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	515	Open in IMG/M
3300009098\|Ga0105245_12261313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300009174\|Ga0105241_10972156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	793	Open in IMG/M
3300009545\|Ga0105237_10144193	All Organisms → cellular organisms → Bacteria	2376	Open in IMG/M
3300010043\|Ga0126380_12000020	Not Available	530	Open in IMG/M
3300010358\|Ga0126370_12172157	Not Available	546	Open in IMG/M
3300010376\|Ga0126381_104062299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	569	Open in IMG/M
3300010396\|Ga0134126_10346081	All Organisms → cellular organisms → Bacteria	1735	Open in IMG/M
3300010399\|Ga0134127_10579370	Not Available	1147	Open in IMG/M
3300010403\|Ga0134123_12427655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	589	Open in IMG/M
3300011119\|Ga0105246_10595654	Not Available	954	Open in IMG/M
3300011270\|Ga0137391_10316359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1345	Open in IMG/M
3300012189\|Ga0137388_11565970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	595	Open in IMG/M
3300012677\|Ga0153928_1053112	Not Available	789	Open in IMG/M
3300012922\|Ga0137394_10181558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1795	Open in IMG/M
3300012989\|Ga0164305_10905131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	742	Open in IMG/M
3300013100\|Ga0157373_10806696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	692	Open in IMG/M
3300015241\|Ga0137418_10946754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300015373\|Ga0132257_103419116	Not Available	578	Open in IMG/M
3300016294\|Ga0182041_11020595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748	Open in IMG/M
3300016341\|Ga0182035_10175090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1673	Open in IMG/M
3300016387\|Ga0182040_11788973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	526	Open in IMG/M
3300017955\|Ga0187817_10703996	Not Available	644	Open in IMG/M
3300017970\|Ga0187783_10811830	Not Available	675	Open in IMG/M
3300017973\|Ga0187780_11128398	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300018061\|Ga0184619_10225628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	862	Open in IMG/M
3300020082\|Ga0206353_10928907	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300021372\|Ga0213877_10041461	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300021560\|Ga0126371_11363300	Not Available	841	Open in IMG/M
3300022467\|Ga0224712_10686255	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	503	Open in IMG/M
3300024331\|Ga0247668_1025317	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300025625\|Ga0208219_1008759	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3345	Open in IMG/M
3300025857\|Ga0209014_10173501	Not Available	768	Open in IMG/M
3300025898\|Ga0207692_10010876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3851	Open in IMG/M
3300025898\|Ga0207692_10875026	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	590	Open in IMG/M
3300025905\|Ga0207685_10015535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2415	Open in IMG/M
3300025906\|Ga0207699_10024218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3316	Open in IMG/M
3300025911\|Ga0207654_10169222	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300025912\|Ga0207707_10290387	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300025914\|Ga0207671_11261606	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300025915\|Ga0207693_10105995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2204	Open in IMG/M
3300025922\|Ga0207646_10147601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2119	Open in IMG/M
3300025927\|Ga0207687_10295738	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300025928\|Ga0207700_10013089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5383	Open in IMG/M
3300025935\|Ga0207709_10085591	All Organisms → cellular organisms → Bacteria	2044	Open in IMG/M
3300025945\|Ga0207679_10941136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	791	Open in IMG/M
3300025961\|Ga0207712_10370996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1195	Open in IMG/M
3300025961\|Ga0207712_11417739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	622	Open in IMG/M
3300025981\|Ga0207640_11713327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300026319\|Ga0209647_1292511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	547	Open in IMG/M
3300027902\|Ga0209048_10090155	All Organisms → cellular organisms → Bacteria	2381	Open in IMG/M
3300027908\|Ga0209006_10699532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300027911\|Ga0209698_10619358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	830	Open in IMG/M
3300028577\|Ga0265318_10033817	Not Available	1972	Open in IMG/M
3300030838\|Ga0311335_11010033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300031226\|Ga0307497_10226247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	824	Open in IMG/M
3300031366\|Ga0307506_10017529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1723	Open in IMG/M
3300031544\|Ga0318534_10303236	Not Available	920	Open in IMG/M
3300031668\|Ga0318542_10039693	All Organisms → cellular organisms → Bacteria	2084	Open in IMG/M
3300031668\|Ga0318542_10094884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1432	Open in IMG/M
3300031736\|Ga0318501_10323069	All Organisms → cellular organisms → Bacteria → Terrabacteria group	826	Open in IMG/M
3300031740\|Ga0307468_101399294	Not Available	643	Open in IMG/M
3300031765\|Ga0318554_10861384	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300031779\|Ga0318566_10497819	Not Available	597	Open in IMG/M
3300032068\|Ga0318553_10429214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	692	Open in IMG/M
3300032180\|Ga0307471_100419984	Not Available	1470	Open in IMG/M
3300032205\|Ga0307472_100032756	All Organisms → cellular organisms → Bacteria	3038	Open in IMG/M
3300032261\|Ga0306920_102651687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	686	Open in IMG/M
3300032770\|Ga0335085_10012973	All Organisms → cellular organisms → Bacteria	12237	Open in IMG/M
3300032782\|Ga0335082_10251278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis acididurans	1651	Open in IMG/M
3300033289\|Ga0310914_11191771	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300034268\|Ga0372943_0032415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2846	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.06%
Host-Associated	Host-Associated	22.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.64%
Plants	Host-Associated → Plants	22.02%
Aquatic	Environmental → Aquatic	6.42%
Fungi	Host-Associated → Fungi	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.42%
Sediment	Environmental → Aquatic → Sediment	3.67%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Marine	Environmental → Aquatic → Marine	0.92%
Peat	Environmental → Terrestrial → Peat	0.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.95%
Loam	Environmental → Terrestrial → Soil → Loam	21.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.01%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.50%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.75%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908038	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001664	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - 5cm_reassembled	Environmental	Open in IMG/M
3300002347	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (NGEE Surface samples 415 (1, 2, 3 deep-072012) AP id is 1030520, ASSEMBLY_DATE=20131219)	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012677	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025857	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089458

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_all_c_02589100	2124908038	Soil	RMQALGYPGSVLAKTLIIHYDPSSRIKVILVPETLGF
deeps_02882440	2199352024	Soil	MQAAGFPGTLLAKTLIISYEPGARISVILVPETLGF
JGI1027J11758_117554842	3300000789	Soil	LPLEHARMQGLGRPGSLLAKTLIISYEPSRRISVMLVPETLGF*
P5cmW16_10132621	3300001664	Permafrost	IHEYCLPREFARMQTVGYPGSLLAKVLTIYAQPGGRIRVILVPETLGF*
JGIcombinedJ26865_10685972	3300002347	Arctic Peat Soil	VREYSLPREFARMQSAGYPGSLLAKTLIIHNEPSGRINVILVPETLGY*
Ga0055465_102530212	3300004013	Natural And Restored Wetlands	YCLPREFQRMQSVGRAGTIWSETLIIHQDPRTRVRVILVPETLGF*
Ga0066395_106995602	3300004633	Tropical Forest Soil	GEGLRRVREYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF*
Ga0066388_1027874363	3300005332	Tropical Forest Soil	PREFGRMQGLGRPGTLLAKTLIIDREPTGRVTVILVPETLGF*
Ga0068869_1008361371	3300005334	Miscanthus Rhizosphere	SLPREYARMRSLGHPGSLLAKTLIIHHDPNGRIKVILVPETLGF*
Ga0070687_1002427514	3300005343	Switchgrass Rhizosphere	LVRDVAEGLERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0070675_1004086341	3300005354	Miscanthus Rhizosphere	DVAEGLERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0070673_1008281771	3300005364	Switchgrass Rhizosphere	EGLERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0070713_1001282551	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RRVREYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITVILVPETLGF*
Ga0070713_1001574691	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RRVREYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILLPETLGF*
Ga0070710_100218064	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	REYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF*
Ga0070707_1017337472	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0068853_1024900752	3300005539	Corn Rhizosphere	PREYGRMQSVGYAGSLLAKSLIIEQEPGGRITVILVPETLGF*
Ga0070664_1011881623	3300005564	Corn Rhizosphere	LPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0068857_1023752901	3300005577	Corn Rhizosphere	REFGRMQGLGRPGTLLAKTLIIDREPTSRVTVILVPETLGF*
Ga0068856_1001609103	3300005614	Corn Rhizosphere	EGLRRVREYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF*
Ga0066903_1069252812	3300005764	Tropical Forest Soil	SAGRAGSMLTKTLIIHSDPTSRITVILVPETLGF*
Ga0066903_1082064291	3300005764	Tropical Forest Soil	ARMQSAGRAGSMLTKTLIIHSDPTSRITVILVPETLGF*
Ga0068860_1002362391	3300005843	Switchgrass Rhizosphere	RLREYSLPREWERMQQAGFPGAVLAKTLIIHYEFGHRIRVILVPETLGF*
Ga0070717_114567632	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	REYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILLPETLGF*
Ga0075017_1004532101	3300006059	Watersheds	VREYSLPREYVRMQEAGYPGSLLAKTLIIHYERSGRISVILVPETLGF*
Ga0075030_1011224472	3300006162	Watersheds	VDEGLRRVREYNLPREYLRMQGQGYPGSLLAKILLICYEPSGRISVILVPQTLGF*
Ga0070715_104385511	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	YSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0070715_108392711	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	EYSLPREFERMQGLGRPGTLLAKTLIIDREPTGRVTVILVPETLGF*
Ga0070716_1000233407	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILLPETLGF*
Ga0070712_1008684633	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0079221_114199181	3300006804	Agricultural Soil	LRRVREYSLPREHARMQSAGRAGSILTKTLIIHSDPTSRITIILVPETLGF*
Ga0079220_100045599	3300006806	Agricultural Soil	VRDVAEGLERLQQYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0079219_122144321	3300006954	Agricultural Soil	GEGLRRVREYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILLPETLGF*
Ga0099795_103043732	3300007788	Vadose Zone Soil	RRLREYSVPREFARMQPAGFPGTMLAKTLIIHHEPSRRITVILVPETLGF*
Ga0105244_104172773	3300009036	Miscanthus Rhizosphere	EGLERLQEYSLPREWDRMQAAGFPGTLLAKTLIISYEPGARISVILVPETLGF*
Ga0099829_117514711	3300009038	Vadose Zone Soil	MQSVGYPGSLLAKTLIIHTEPGNRISVILVPETLGF*
Ga0099828_108412351	3300009089	Vadose Zone Soil	RMQSVGRPGSLLAKTLIIHHEPSGRIKVILVPETLGF*
Ga0099827_119217141	3300009090	Vadose Zone Soil	IREYSLPREFVRMQSVGYPGSLLAKTLIIHTEPGNRISVILVPETLGF*
Ga0105245_122613132	3300009098	Miscanthus Rhizosphere	REYSLPREYARMRSLGHPGSLLAKTLIIHHDPNGRIKVILVPETLGF*
Ga0105241_109721563	3300009174	Corn Rhizosphere	GLERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0105237_101441931	3300009545	Corn Rhizosphere	RLREYSLPREFGRMQGLGRPGTLLAKTLIIDREPTSRVTVILVPETLGF*
Ga0126380_120000201	3300010043	Tropical Forest Soil	HARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF*
Ga0126370_121721571	3300010358	Tropical Forest Soil	SAGRAGSMLTKTLIIHSDPTSRVTVILVPETLGF*
Ga0126381_1040622992	3300010376	Tropical Forest Soil	LPREHARMQSIGRPGSLLAKTLIISYDRPGRITVILVPETLGF*
Ga0134126_103460811	3300010396	Terrestrial Soil	EFGRMQGLGRPGTLLAKTLIIDREPTGRVTVILVPETLGF*
Ga0134127_105793701	3300010399	Terrestrial Soil	SLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF*
Ga0134123_124276553	3300010403	Terrestrial Soil	WDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0105246_105956542	3300011119	Miscanthus Rhizosphere	EHARMQSAGRAGSMLTKTLIIHSDPTSRITVILVPETLGF*
Ga0137391_103163594	3300011270	Vadose Zone Soil	SLPREFARMQAAGFPGTMLAKTLIIHHEPSARITVILVPERLGF*
Ga0137388_115659702	3300012189	Vadose Zone Soil	MQSVGRPGSLLAKTLIIHHEPSGRIKVILVPETLGF*
Ga0153928_10531121	3300012677	Attine Ant Fungus Gardens	DAGYPGSLLAKTLIMHYEPSGRISVILVPETLGF*
Ga0137394_101815581	3300012922	Vadose Zone Soil	LRRLREYSLPREFARMQDAGFPGTMLAKTLIIHYEPSARITVILVPETLGF*
Ga0164305_109051311	3300012989	Soil	PREYVRMQEAGYPGSLLAKTLIMHYEPSGRISVILVPEALGF*
Ga0157373_108066961	3300013100	Corn Rhizosphere	EWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF*
Ga0137418_109467542	3300015241	Vadose Zone Soil	YARMQSVGYPGSVLAKTLIIHFEPSGRIKVILVPETLGF*
Ga0132257_1034191162	3300015373	Arabidopsis Rhizosphere	ARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF*
Ga0182041_110205951	3300016294	Soil	EHARMQNLGLPGSLLAKTLIIHQEPSRRITVILIPDTLGF
Ga0182035_101750901	3300016341	Soil	RMQNLGLPGSLLAKTLIIHQEPSRRITVILIPDTLGF
Ga0182040_117889731	3300016387	Soil	EYSLPREHTRMQSLGHPGSLLAKTLIIHQEPSRRITVILIPDTLGF
Ga0187817_107039961	3300017955	Freshwater Sediment	LPREFARMQGIGRPGSLLAKTLIISYEPSGRIDVILVPETLGF
Ga0187783_108118301	3300017970	Tropical Peatland	PREHARMQSLGRPGSMLTKTLIIHSDPTSRIAVILVPETLGF
Ga0187780_111283982	3300017973	Tropical Peatland	PREYARMQSLGRPGSILAKTLIIHHEPTSRITVILVPETLGF
Ga0184619_102256282	3300018061	Groundwater Sediment	RPREYSLPREYARLQSLGHMGSALGKTLIFHQEFSGRTHVMLVPETLGF
Ga0206353_109289073	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	LREYSLPREFGRMQGLGRPGTLLAKTLIIDREPTSRVTVILVPETLGF
Ga0213877_100414614	3300021372	Bulk Soil	YSFPREFARMQATGMPGTILAKTLILHREPQRRTHVILVPQTLGF
Ga0126371_113633001	3300021560	Tropical Forest Soil	SLPREHARMQSAGRAGSMLTKTLIIHSDPTSRVTIILVPETLGF
Ga0224712_106862552	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	FGRMQGLGRPGTLLAKTLIIDREPTSRVTVILVPETLGF
Ga0247668_10253173	3300024331	Soil	REFGRMQGLGRPGTLLAKTLIIDREPTSRVTVILVPETLGF
Ga0208219_10087593	3300025625	Arctic Peat Soil	MQGLGHMGSALGKTLIFHQEFSGRTRVILVPETLGF
Ga0209014_101735011	3300025857	Arctic Peat Soil	RLREYSLPREYARMQSLGHPGSALGKTLILHLELSGRTRVILVPETLGH
Ga0207692_100108767	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	QGLGRPGTLLAKTLIIDREPTGRVTVILVPETLGF
Ga0207692_108750261	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	REYSLPREFGRMQGLGRPGTLLAKTLIIDREPTSRVTVILVPETLGF
Ga0207685_100155353	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VREYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF
Ga0207699_100242184	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	RRVREYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITVILVPETLGF
Ga0207654_101692224	3300025911	Corn Rhizosphere	PREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF
Ga0207707_102903871	3300025912	Corn Rhizosphere	SLPREFGRMQGLGRPGTLLAKTLIIDREPTSRVTVILVPETLGF
Ga0207671_112616062	3300025914	Corn Rhizosphere	DVAEGLERLQEYSLPREWDRMQAAGFPGTLLAKTLIISYEPGARISVRA
Ga0207693_101059953	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	EHARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF
Ga0207646_101476013	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MQSLGRPGSLLAKTLIISYEPSARISVILVPETLGF
Ga0207687_102957381	3300025927	Miscanthus Rhizosphere	QKLVRDVAEGLERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLG
Ga0207700_100130891	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILVPETLGF
Ga0207709_100855911	3300025935	Miscanthus Rhizosphere	ERLQHYSLPREWDRMQAAGFPGTVLAKTLTISYEPGARISVILVPETLGF
Ga0207679_109411363	3300025945	Corn Rhizosphere	KLVRDVAEGLERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF
Ga0207712_103709961	3300025961	Switchgrass Rhizosphere	LREYSLPREWERMQQAGFPGAVLAKTLIIHYEFGHRIRVILVPETLGF
Ga0207712_114177391	3300025961	Switchgrass Rhizosphere	EGLERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF
Ga0207640_117133271	3300025981	Corn Rhizosphere	LREYSLPREYARMRSLGHPGSLLAKTLIIHHDPNGRIKVILVPETLGF
Ga0209647_12925111	3300026319	Grasslands Soil	EYSVPREFARMQEAGFPGTILAKTLLIHHDPTSRTTVILVPETLGF
Ga0209048_100901554	3300027902	Freshwater Lake Sediment	MQSIGYPGSLLAKTLIIHHEPSARITVILVPETLGF
Ga0209006_106995322	3300027908	Forest Soil	MQDAGYPGSLLAKTLIVHYEPSGRISVILVPEILGF
Ga0209698_106193581	3300027911	Watersheds	REYVRMQEAGYPGSLLAKTLIIHYEPSGRISVILVPEALGF
Ga0265318_100338171	3300028577	Rhizosphere	REYSLPREYLRMQSVGYPGSLLTKTLIVEREPGGRITVILVAETLGF
Ga0311335_110100333	3300030838	Fen	LPREFVRMQGVGYPGSLLAKTLIIHNEPSGRIRVILVPETLGY
Ga0307497_102262472	3300031226	Soil	RMQDTGFPGTLLAKTLIIHHEPSARITVILVPETLGF
Ga0307506_100175291	3300031366	Soil	GLERLQHYSLPREWDRMQAAGFPGTVLAKTLIISYEPGARISVILVPETLGF
Ga0318534_103032361	3300031544	Soil	MQSLGRPGSTLAKTLIIDREPSRRITVILVPETLGF
Ga0318542_100396931	3300031668	Soil	KALGRPGRTLAKTLIIDREPSRRITVIVVPERLGF
Ga0318542_100948841	3300031668	Soil	YSLPREHARMQNLGLPGSLLAKTLIIHQEPSRRITVILIPDTLGF
Ga0318501_103230691	3300031736	Soil	VADVREHARMQSLGRPGSTLVKTLIIDREPSRWITVILVPE
Ga0307468_1013992942	3300031740	Hardwood Forest Soil	PREYLRMQEVGYPGSLLAKTLLIEHEPGGRISVILVPETLGF
Ga0318554_108613842	3300031765	Soil	VREYSLPREHARMQSVGRQGSLLAKTLIISYDRPGRITVILVPETLGF
Ga0318566_104978191	3300031779	Soil	VADVREHARMQSLGRPGSTLAKTLIIDREPSRRITVILVPETLGF
Ga0318553_104292142	3300032068	Soil	TRMQSAGFPGSLLAKTLIIHHDRPGRITVILVPETLGF
Ga0307471_1004199841	3300032180	Hardwood Forest Soil	HARMQSAGRAGSMLTKTLIIHSDPTSRITIILLPETLGF
Ga0307472_1000327564	3300032205	Hardwood Forest Soil	DLSEGLRRVREYSLPREHARMQSAGRAGSMLTKTLIIHSDPTSRITIILLPETLGF
Ga0306920_1026516872	3300032261	Soil	HTRMQSAGFPGSLLAKTLIIHHDRPGRITVILVPETLGF
Ga0335085_100129733	3300032770	Soil	MQSLGRPGSMLTKTLIIHSDPTSRISVILVPQTFGF
Ga0335082_102512783	3300032782	Soil	YSLPREFARMQGAGFPGTLLAKTLLIHQEPRGRITVILVPETLGF
Ga0310914_111917711	3300033289	Soil	LVADVREHARMQSLGRPGSTLVKTLIIDREPSRRITVILVPETLGF
Ga0372943_0032415_7_117	3300034268	Soil	MQTVGYPGSILAKTLLIEREPGGRITVLLVPETLGF

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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