Basic Information | |
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Family ID | F089457 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 109 |
Average Sequence Length | 61 residues |
Representative Sequence | TADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSP |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 3.67 % |
% of genes from short scaffolds (< 2000 bps) | 3.67 % |
Associated GOLD sequencing projects | 93 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.28 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (97.248 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.780 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.523 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.037 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 16.87% Coil/Unstructured: 83.13% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.28 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 109 Family Scaffolds |
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PF00501 | AMP-binding | 11.93 |
PF02861 | Clp_N | 5.50 |
PF04672 | Methyltransf_19 | 4.59 |
PF03551 | PadR | 3.67 |
PF13604 | AAA_30 | 3.67 |
PF13538 | UvrD_C_2 | 3.67 |
PF01179 | Cu_amine_oxid | 3.67 |
PF11838 | ERAP1_C | 2.75 |
PF00924 | MS_channel | 2.75 |
PF01921 | tRNA-synt_1f | 1.83 |
PF05711 | TylF | 1.83 |
PF14226 | DIOX_N | 0.92 |
PF06224 | HTH_42 | 0.92 |
PF10400 | Vir_act_alpha_C | 0.92 |
PF03781 | FGE-sulfatase | 0.92 |
PF04972 | BON | 0.92 |
PF00082 | Peptidase_S8 | 0.92 |
PF00753 | Lactamase_B | 0.92 |
PF13193 | AMP-binding_C | 0.92 |
COG ID | Name | Functional Category | % Frequency in 109 Family Scaffolds |
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COG0542 | ATP-dependent Clp protease, ATP-binding subunit ClpA | Posttranslational modification, protein turnover, chaperones [O] | 5.50 |
COG1695 | DNA-binding transcriptional regulator, PadR family | Transcription [K] | 3.67 |
COG1733 | DNA-binding transcriptional regulator, HxlR family | Transcription [K] | 3.67 |
COG1846 | DNA-binding transcriptional regulator, MarR family | Transcription [K] | 3.67 |
COG3733 | Cu2+-containing amine oxidase | Secondary metabolites biosynthesis, transport and catabolism [Q] | 3.67 |
COG0668 | Small-conductance mechanosensitive channel | Cell wall/membrane/envelope biogenesis [M] | 2.75 |
COG3264 | Small-conductance mechanosensitive channel MscK | Cell wall/membrane/envelope biogenesis [M] | 2.75 |
COG1384 | Lysyl-tRNA synthetase, class I | Translation, ribosomal structure and biogenesis [J] | 1.83 |
COG1262 | Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain | Posttranslational modification, protein turnover, chaperones [O] | 0.92 |
COG3214 | DNA glycosylase YcaQ, repair of DNA interstrand crosslinks | Replication, recombination and repair [L] | 0.92 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 97.25 % |
All Organisms | root | All Organisms | 2.75 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300017821|Ga0187812_1058075 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1295 | Open in IMG/M |
3300017823|Ga0187818_10209905 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 850 | Open in IMG/M |
3300021401|Ga0210393_10540734 | Not Available | 952 | Open in IMG/M |
3300031778|Ga0318498_10080747 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1467 | Open in IMG/M |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 35.78% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 11.01% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 5.50% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 5.50% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.50% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.59% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.67% |
Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 3.67% |
Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 2.75% |
Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.83% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.83% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.83% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.83% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 1.83% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 1.83% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.83% |
Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 1.83% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.83% |
Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 0.92% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.92% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.92% |
Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.92% |
Biofilm | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm | 0.92% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.92% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
3300009521 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG | Environmental | Open in IMG/M |
3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Host-Associated | Open in IMG/M |
3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
3300017821 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2 | Environmental | Open in IMG/M |
3300017823 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 | Environmental | Open in IMG/M |
3300017926 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2 | Environmental | Open in IMG/M |
3300017928 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1 | Environmental | Open in IMG/M |
3300017932 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 | Environmental | Open in IMG/M |
3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
3300017959 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG | Environmental | Open in IMG/M |
3300017973 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG | Environmental | Open in IMG/M |
3300017995 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1 | Environmental | Open in IMG/M |
3300018001 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5 | Environmental | Open in IMG/M |
3300020150 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG | Environmental | Open in IMG/M |
3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
3300021476 | Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2) | Environmental | Open in IMG/M |
3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
3300022557 | Paint Pots_combined assembly | Environmental | Open in IMG/M |
3300022709 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300025905 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026467 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A | Environmental | Open in IMG/M |
3300026551 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) | Environmental | Open in IMG/M |
3300027096 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes) | Environmental | Open in IMG/M |
3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
3300030494 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2) | Environmental | Open in IMG/M |
3300030707 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2) | Environmental | Open in IMG/M |
3300030730 | Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300031546 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 | Environmental | Open in IMG/M |
3300031572 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19 | Environmental | Open in IMG/M |
3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
3300031768 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22 | Environmental | Open in IMG/M |
3300031778 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24 | Environmental | Open in IMG/M |
3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
3300031798 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 | Environmental | Open in IMG/M |
3300031799 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 | Environmental | Open in IMG/M |
3300031805 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 | Environmental | Open in IMG/M |
3300031821 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20 | Environmental | Open in IMG/M |
3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
3300031831 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20 | Environmental | Open in IMG/M |
3300031860 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 | Environmental | Open in IMG/M |
3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
3300031939 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2 | Environmental | Open in IMG/M |
3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
3300032054 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23 | Environmental | Open in IMG/M |
3300032055 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 | Environmental | Open in IMG/M |
3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
3300032068 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 | Environmental | Open in IMG/M |
3300032074 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1 | Environmental | Open in IMG/M |
3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
3300032090 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22 | Environmental | Open in IMG/M |
3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
3300033290 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGIcombinedJ51221_100677553 | 3300003505 | Forest Soil | LAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS* |
Ga0062388_1017422701 | 3300004635 | Bog Forest Soil | ADLVGYAWTGAATDRYWLTLDPSPVNPPPGLRGQFAEGRLTPFPPGQAPCAPSPAS* |
Ga0070714_1014743892 | 3300005435 | Agricultural Soil | DGRADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQATSFPAGQGPCAGR* |
Ga0070714_1017913071 | 3300005435 | Agricultural Soil | DGTADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCADR* |
Ga0070713_1021978201 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | DGRADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQAASFPAGQGPCAGR* |
Ga0070711_1017019272 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | DGKADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQGPCAGR* |
Ga0070684_1011705382 | 3300005535 | Corn Rhizosphere | SPLPDKVWAAGLAGADGKADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCADR* |
Ga0070731_105928873 | 3300005538 | Surface Soil | ADLVGYAWTGAVADRYWLTLDPSPVNPPPGLRGQFAQGRLTPFPPGQAPCAAG* |
Ga0070761_100720461 | 3300005591 | Soil | ADPPPDDVWATGLAGADGTADLAGYTWTGAVADTYWLSLDPSPASAPPGLHGRFGQGQATPFPAGQAPCATAS* |
Ga0070762_107282232 | 3300005602 | Soil | PDDVWATGLAGADGTADLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS* |
Ga0070763_101306143 | 3300005610 | Soil | TGVTSAAGVADLVGYAWTGAPADYYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSPAG* |
Ga0068863_1003155164 | 3300005841 | Switchgrass Rhizosphere | ADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCPDR* |
Ga0070766_109359552 | 3300005921 | Soil | DDVWATGLAGADGTADLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS* |
Ga0070715_104443511 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | VSPLPDKVWATGLAGADGRADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQATSFPAGQAPCADR* |
Ga0070716_1000845401 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | DLIGNDCSDVSPLPDKVWAAGLAGADGKADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCADR* |
Ga0070712_1001704643 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | KADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCADR* |
Ga0079222_110895881 | 3300006755 | Agricultural Soil | ADLTGYAWTGAVADRYWMTLDPAPGHPPGLRGRFARGQAASFPAGQGPCAD* |
Ga0079220_106542981 | 3300006806 | Agricultural Soil | KVWATGLAGADGTADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQAASFPAGQAPCAGR* |
Ga0066709_1045189151 | 3300009137 | Grasslands Soil | ADLVGYAWTGAVADRHWMVLDPSPVGPAPGLHGHFAQGMAAPFPAGQAPCAIPP* |
Ga0116214_11316543 | 3300009520 | Peatlands Soil | WATGLAGANGRADLVGYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS* |
Ga0116222_12621392 | 3300009521 | Peatlands Soil | LAGANGRADLVGYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS* |
Ga0126373_115365912 | 3300010048 | Tropical Forest Soil | IWATGLTDASGGARLRGYAWTGAVADEYWLALSPSPVYGSPGLRGRFARGSAAPFPAGKPPCAPSP* |
Ga0126378_110016642 | 3300010361 | Tropical Forest Soil | PLGNHVWATGFTSATGSADLVGYSWTGAVTDLYWLTLDPSPVSRPPGLHGRFAAGQAAAFPSGQAPCALPS* |
Ga0134128_108263113 | 3300010373 | Terrestrial Soil | GNDCSDVSPLPDKVWATGLAGPDGTADLTGYAWTGAVADRYWMTLDPAPDHPPGLHGRFAQGQAAPFPAGQGPCADR* |
Ga0126381_1024896881 | 3300010376 | Tropical Forest Soil | YAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQATAFRSGQAPCALPS* |
Ga0126369_106754201 | 3300012971 | Tropical Forest Soil | WTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFASGQAPCALSS* |
Ga0164309_109679522 | 3300012984 | Soil | DVSPLPDKVWAAGMAGADGKADLTGYAWTGPVADRYWITLDPSPGHPPGLHGRFAQGQATSFPAGQAPCADR* |
Ga0157373_109719922 | 3300013100 | Corn Rhizosphere | WASGLSGANGRADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQAASFPAGQGPCAD* |
Ga0182036_116018091 | 3300016270 | Soil | GTADLVGYAWTGAVADRYWLVLDPSPDNPPPGLHGQFVQGRAAPFPASQAPCVPSP |
Ga0182037_107676011 | 3300016404 | Soil | LTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAEGQATQFPAGQAPCAASP |
Ga0187812_10580751 | 3300017821 | Freshwater Sediment | RAELVGYAWTGAVADRYWLVLDPSQVNPPPGLRGQFAEGLAAPFPAGQAPCVPSA |
Ga0187812_11297713 | 3300017821 | Freshwater Sediment | ADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGEFVQGRAAPFPASQAPCVPSP |
Ga0187818_102099051 | 3300017823 | Freshwater Sediment | YAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS |
Ga0187807_10082575 | 3300017926 | Freshwater Sediment | GYAWTGAVADRYWLVLDPSQVNPPPGLSGTFAEGRAAPFPAGQAPCVPSP |
Ga0187807_10373111 | 3300017926 | Freshwater Sediment | SWTGAVADRYWLVLDPSPASLPPGLHGQFAAGEATPFPAGQAPCASP |
Ga0187807_10558391 | 3300017926 | Freshwater Sediment | GRADLVGYAWTGAVADRYWLVLDPSQVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS |
Ga0187806_12398471 | 3300017928 | Freshwater Sediment | GRADLVGYAWTGAVADRYWLVLDPSQVNPPPGLRGQFAEGRAAPFPAGQAPCVPSA |
Ga0187814_100075656 | 3300017932 | Freshwater Sediment | GLASANGRADLVGYAWTGAVADRYWLVLDPSQVNPPPGLSGTFAEGRAAPFPAGQAPCVPSP |
Ga0187814_102247763 | 3300017932 | Freshwater Sediment | ANGRADLVGYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS |
Ga0187819_103054393 | 3300017943 | Freshwater Sediment | WATGLASANGTADLVGYAWTGAVADRYWLVLDPSPVNPPPGLHGEFVQGRAAPFPASQAPCVPSP |
Ga0187779_106149281 | 3300017959 | Tropical Peatland | GYAWTGAVADVYWLTLDPLPVARPPGLRGQFAAGRAAPFPAGQAPCAPSPP |
Ga0187780_101357881 | 3300017973 | Tropical Peatland | SPLGDHVWATGIADPLGAADLVGYAWTGAVADVYWLALDPLPVARPPGLRGQFAAGRAAPFPAGQAPCAPSPP |
Ga0187816_105209742 | 3300017995 | Freshwater Sediment | ADLVGYAWTGAVADFYWLALDPLPVERPPGLHGQFAEGRAAPYLAGQAPCAASP |
Ga0187815_100901841 | 3300018001 | Freshwater Sediment | AWTGAVADRYWLVLDPSQVNPPPGLSGTFAEGRAAPFPAGQAPCVPSP |
Ga0187768_10371971 | 3300020150 | Tropical Peatland | ELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAEGLATPFPAGQPPCTSSPDR |
Ga0210401_115534121 | 3300020583 | Soil | DPPPDDVWATGLAGADGTADLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS |
Ga0210405_107424381 | 3300021171 | Soil | AGAAGVADLVGYAWTGATADRYWLTLDPSPVNPPPGLRGQFAQGQVAPFPVGQAPCAG |
Ga0210408_102786781 | 3300021178 | Soil | AGVADLVGYAWTGAAADRYWLALDPSPVNPPPGLRGQFAQGQVAPFPAGQAPCAPSPAG |
Ga0210393_105407342 | 3300021401 | Soil | SAVGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLRGQFAQGQVTPFPAGQAPCAPSE |
Ga0210385_110059362 | 3300021402 | Soil | ADLVGYAWTSAAADRYWLALDPSPVNPPPGLRGQFAQGQVTPFPAGQAPCAPSE |
Ga0210387_104719681 | 3300021405 | Soil | WTGAAADRYWLALDPSPVNPPPGLRGQFAQGQVAPFPAGQAPCAPSPAG |
Ga0210386_102380231 | 3300021406 | Soil | VWATGVTSAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGEATPFPAGQAPCAPSPAG |
Ga0210390_102421941 | 3300021474 | Soil | AAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGEATPFPAGQAPCAPSPAG |
Ga0187846_101478011 | 3300021476 | Biofilm | DRYWLVLDPSPAAHPPGLDGQFAMGQATTFATGQAPCAT |
Ga0210398_106428841 | 3300021477 | Soil | WATGVTSAAGVADLVGYAWTGAAADRYWLALDPSPVNPPPGLRGQFAQGQVAPFPAGQAPCAPSPAG |
Ga0210398_109630991 | 3300021477 | Soil | GTADLTGYVWTGVVVDQYWLVLDPSPVNPPPGLRGQFIEGSAAPFPPSQAPCPTSP |
Ga0210398_111993182 | 3300021477 | Soil | ADPPPDDVWATGLAGADGTADLAGYTWTGAVADTYWLSLDPSPASAPPGLHGRFGQGQATPFPAGQAPCATAS |
Ga0210410_103735203 | 3300021479 | Soil | TGVTSAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGEATPFPAGQAPCAPSPAG |
Ga0212123_105500962 | 3300022557 | Iron-Sulfur Acid Spring | PLPDHVWATGVTSAAGVADLVGYAWTGAAADYYWLTLDPSPVNPPPGLHGQFTQGQLTPFLAGQAPCAPSPGG |
Ga0222756_10189482 | 3300022709 | Soil | VTSAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGEATPFPAGQAPCAPSPAG |
Ga0207685_104136782 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | DVSPLPDKVWATGLAGADGRADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFAQGQATSFPAGQAPCADR |
Ga0207641_110877911 | 3300026088 | Switchgrass Rhizosphere | GNDCSDVSPLPDKVWATGLAGPDGTADLTGYAWTGAVADRYWMTLDPAPDHPPGLHGRFAQGQAAPFPAGQGPCADR |
Ga0257154_10266241 | 3300026467 | Soil | TGVTSAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGQVTPFPAGQAPCAPSPAG |
Ga0209648_104193573 | 3300026551 | Grasslands Soil | GVTSAAGAADLVGYAWTGAAADRYWLTLDPSPVNPPPGLRGQFGQGLVAPFPAGQAPCTPSAAG |
Ga0208099_10110202 | 3300027096 | Forest Soil | GSDCSTADPPPDDVWATGLAGADGTADLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS |
Ga0209656_103780032 | 3300027812 | Bog Forest Soil | TADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSP |
Ga0209275_107627041 | 3300027884 | Soil | STTAALPDHVWATGVAGAAGVADLVGYAWTGATADRYWLTLDPSPVNPPPGLRGQFAQGQVAPFPVGQAPCAG |
Ga0308309_104453332 | 3300028906 | Soil | PDHVWATGVAGAAGVADLVGYAWTGATADRYWLTLDPSPVNPPPGLRGQFAQGQVAPFPVGQAPCAG |
Ga0310037_103849731 | 3300030494 | Peatlands Soil | AWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS |
Ga0310038_101223651 | 3300030707 | Peatlands Soil | GNDCSTADPLPDDVWATGLAGANGRADLVGYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS |
Ga0307482_10890231 | 3300030730 | Hardwood Forest Soil | TAPLPDHVWATGVTGAAGVADLVGYAWTGAAADRYWLTLDPSPVNPPPGLRGQFAQGQAAPFPAGQAPCAG |
Ga0318538_106247471 | 3300031546 | Soil | SSPMPELTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP |
Ga0318515_101291471 | 3300031572 | Soil | GGRPPAASAVSSPMPELTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP |
Ga0318515_103428742 | 3300031572 | Soil | LGNHVWATGFTSATGSADLVGYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFPSGQAPCALSS |
Ga0318555_106567672 | 3300031640 | Soil | SWTGAITDRYWLTLDPSPVSAPPGLRGQFAEGVADPFPPGQAPCAPST |
Ga0318542_101396332 | 3300031668 | Soil | AAGSGDLTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP |
Ga0310686_1064601321 | 3300031708 | Soil | PDDVWASGLTGANGAADLVGYAWTGAVADSYWLVLDPQSVNRPPGLHGQFAEGRAAPYPAGQSPCPN |
Ga0307474_102369353 | 3300031718 | Hardwood Forest Soil | TSAAGVADLVGYAWTGAAADRYWLTLDPSPVNPPPGLRGQFAQGKVAPFPAGQAPCAPSPAG |
Ga0306917_104268072 | 3300031719 | Soil | GDLTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP |
Ga0318502_106301711 | 3300031747 | Soil | PELTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP |
Ga0307475_102515774 | 3300031754 | Hardwood Forest Soil | TDHVWATGVTGADGTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSP |
Ga0318509_107910681 | 3300031768 | Soil | LGNHVWATGFTNPAGTAELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAAGQATQFPAGQAPCAASP |
Ga0318498_100807473 | 3300031778 | Soil | GLASANGTADLVGYAWTGAVADRYWLVLDPSPVNPPPGLQGQFVQGRAAPFPASQAPCVPSP |
Ga0318547_101428801 | 3300031781 | Soil | NPAGTAELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAAGQATPFPAGQAPCAASP |
Ga0318547_107367731 | 3300031781 | Soil | PDDVWATGLASANGTADLVGYAWTGAVADRYWLVLDPSPVNPPPGLHGQFVQGRAAPFPASQAPCVPSP |
Ga0318523_101930252 | 3300031798 | Soil | CSGGGPLGNHVWATGFTSATGSADLVGYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFPSGQAPCALSS |
Ga0318565_104218311 | 3300031799 | Soil | ADGTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPLP |
Ga0318497_106888542 | 3300031805 | Soil | TADLVGYAWTGAVADRYWLVLDPSPVNPPPGLQGQFVQGRAAPFPASQAPCVPSP |
Ga0318497_107897551 | 3300031805 | Soil | VTGADGTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPL |
Ga0318567_102292091 | 3300031821 | Soil | GNHVWATGFTSAAGSADLVGYAWTGAVTDSYWLTLDPSPVSRPPGVHGRFAAGQATAFPSGQAPCALSS |
Ga0307478_101889054 | 3300031823 | Hardwood Forest Soil | GVADLVGYAWTGAAADRYWLALDPSPVNPPPGLRGQFAQGRATPFPAGQAPCAPSPAG |
Ga0307478_104852093 | 3300031823 | Hardwood Forest Soil | TGVTSAAGVADLVGYAWTGAAADRYWLTLDPSPVNPPPGLRGQFARGQVAPFPAGQAPCAPSPAG |
Ga0318564_102194592 | 3300031831 | Soil | TSTAGSADLVGYSWTGAVTDSYWLTLDPSPLSRPPGLHGRFAAGQAAAFASGQAPCALPS |
Ga0318495_101653762 | 3300031860 | Soil | AELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAAGQATPFPAGQAPCAASP |
Ga0318551_102026221 | 3300031896 | Soil | RPPAASAVSSPMPELTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP |
Ga0318551_108538031 | 3300031896 | Soil | TGADGTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPLP |
Ga0308174_109233421 | 3300031939 | Soil | GLAGADGRADLTGYAWTGAVADRYWMTLDPAPRHPPGLHGRFARGQATSFPAGQGPCAGR |
Ga0307479_114637021 | 3300031962 | Hardwood Forest Soil | ATGVTGAAGVADLVGYAWTGAAADRYWLALDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSPAG |
Ga0306922_112621521 | 3300032001 | Soil | GNHVWATGFTSATGSADLVGYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFPSGQAPCALSS |
Ga0318570_105157891 | 3300032054 | Soil | DLVGYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFASGQAPCALPS |
Ga0318575_101176712 | 3300032055 | Soil | TAELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAAGQATQFPAGQAPCAASP |
Ga0318514_100416263 | 3300032066 | Soil | AWTGAVTDSYWLTLDPSPVSRPPGVHGRFAAGQATAFPSGQAPCALSS |
Ga0318553_104348292 | 3300032068 | Soil | DLVGYAWTGAVADRYWLVLDPSPVNPPPGLQGQFVQGRAAPFPASQAPCVPSP |
Ga0308173_115194072 | 3300032074 | Soil | DLTGYAWTGAVADRYWMTLDPAPRHPPGLHGRFARGQATSFPAGKAPCADR |
Ga0306924_113472442 | 3300032076 | Soil | PLGNHVWATGLAGPRGTADLTGYSWTGAVADLYWLTLDPSPAARPPGLYGQFAKGRAAPFAAGQAPCPSSP |
Ga0318518_103338491 | 3300032090 | Soil | GFTSAAGSGDLTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP |
Ga0335072_113992261 | 3300032898 | Soil | ADLVGYAWTGAVADRYWLVLDPSPVNPPPGLRGLFVEGSGAPFPASQSPCATSP |
Ga0335073_112444582 | 3300033134 | Soil | VWASGHTGANGTADLVGYPWTGAVADSYWLVLDPQSVNRPPGLHGQFAQGRAAPYPVGQSPCPG |
Ga0318519_105333511 | 3300033290 | Soil | HVWATGLAGPRGTADLVGYAWTGAVADLYWLTLDPSPTERPPGLHGQFAEGRAAPFPAGQPPCPPSP |
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