NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F089457

Metagenome / Metatranscriptome Family F089457

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F089457
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 61 residues
Representative Sequence TADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSP
Number of Associated Samples 97
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 3.67 %
% of genes from short scaffolds (< 2000 bps) 3.67 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (97.248 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(35.780 % of family members)
Environment Ontology (ENVO) Unclassified
(27.523 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.037 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 16.87%    Coil/Unstructured: 83.13%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF00501AMP-binding 11.93
PF02861Clp_N 5.50
PF04672Methyltransf_19 4.59
PF03551PadR 3.67
PF13604AAA_30 3.67
PF13538UvrD_C_2 3.67
PF01179Cu_amine_oxid 3.67
PF11838ERAP1_C 2.75
PF00924MS_channel 2.75
PF01921tRNA-synt_1f 1.83
PF05711TylF 1.83
PF14226DIOX_N 0.92
PF06224HTH_42 0.92
PF10400Vir_act_alpha_C 0.92
PF03781FGE-sulfatase 0.92
PF04972BON 0.92
PF00082Peptidase_S8 0.92
PF00753Lactamase_B 0.92
PF13193AMP-binding_C 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0542ATP-dependent Clp protease, ATP-binding subunit ClpAPosttranslational modification, protein turnover, chaperones [O] 5.50
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 3.67
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 3.67
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 3.67
COG3733Cu2+-containing amine oxidaseSecondary metabolites biosynthesis, transport and catabolism [Q] 3.67
COG0668Small-conductance mechanosensitive channelCell wall/membrane/envelope biogenesis [M] 2.75
COG3264Small-conductance mechanosensitive channel MscKCell wall/membrane/envelope biogenesis [M] 2.75
COG1384Lysyl-tRNA synthetase, class ITranslation, ribosomal structure and biogenesis [J] 1.83
COG1262Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domainPosttranslational modification, protein turnover, chaperones [O] 0.92
COG3214DNA glycosylase YcaQ, repair of DNA interstrand crosslinksReplication, recombination and repair [L] 0.92


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.25 %
All OrganismsrootAll Organisms2.75 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300017821|Ga0187812_1058075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1295Open in IMG/M
3300017823|Ga0187818_10209905All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium850Open in IMG/M
3300021401|Ga0210393_10540734Not Available952Open in IMG/M
3300031778|Ga0318498_10080747All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1467Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil35.78%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment11.01%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.50%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.50%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.59%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.67%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil3.67%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.75%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.83%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.83%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.83%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.92%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.92%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.92%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.92%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.92%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017821Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018001Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5EnvironmentalOpen in IMG/M
3300020150Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MGEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022709Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026467Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-AEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027096Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030494Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1006775533300003505Forest SoilLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS*
Ga0062388_10174227013300004635Bog Forest SoilADLVGYAWTGAATDRYWLTLDPSPVNPPPGLRGQFAEGRLTPFPPGQAPCAPSPAS*
Ga0070714_10147438923300005435Agricultural SoilDGRADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQATSFPAGQGPCAGR*
Ga0070714_10179130713300005435Agricultural SoilDGTADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCADR*
Ga0070713_10219782013300005436Corn, Switchgrass And Miscanthus RhizosphereDGRADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQAASFPAGQGPCAGR*
Ga0070711_10170192723300005439Corn, Switchgrass And Miscanthus RhizosphereDGKADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQGPCAGR*
Ga0070684_10117053823300005535Corn RhizosphereSPLPDKVWAAGLAGADGKADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCADR*
Ga0070731_1059288733300005538Surface SoilADLVGYAWTGAVADRYWLTLDPSPVNPPPGLRGQFAQGRLTPFPPGQAPCAAG*
Ga0070761_1007204613300005591SoilADPPPDDVWATGLAGADGTADLAGYTWTGAVADTYWLSLDPSPASAPPGLHGRFGQGQATPFPAGQAPCATAS*
Ga0070762_1072822323300005602SoilPDDVWATGLAGADGTADLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS*
Ga0070763_1013061433300005610SoilTGVTSAAGVADLVGYAWTGAPADYYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSPAG*
Ga0068863_10031551643300005841Switchgrass RhizosphereADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCPDR*
Ga0070766_1093595523300005921SoilDDVWATGLAGADGTADLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS*
Ga0070715_1044435113300006163Corn, Switchgrass And Miscanthus RhizosphereVSPLPDKVWATGLAGADGRADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQATSFPAGQAPCADR*
Ga0070716_10008454013300006173Corn, Switchgrass And Miscanthus RhizosphereDLIGNDCSDVSPLPDKVWAAGLAGADGKADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCADR*
Ga0070712_10017046433300006175Corn, Switchgrass And Miscanthus RhizosphereKADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFARGQATSFPAGQAPCADR*
Ga0079222_1108958813300006755Agricultural SoilADLTGYAWTGAVADRYWMTLDPAPGHPPGLRGRFARGQAASFPAGQGPCAD*
Ga0079220_1065429813300006806Agricultural SoilKVWATGLAGADGTADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQAASFPAGQAPCAGR*
Ga0066709_10451891513300009137Grasslands SoilADLVGYAWTGAVADRHWMVLDPSPVGPAPGLHGHFAQGMAAPFPAGQAPCAIPP*
Ga0116214_113165433300009520Peatlands SoilWATGLAGANGRADLVGYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS*
Ga0116222_126213923300009521Peatlands SoilLAGANGRADLVGYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS*
Ga0126373_1153659123300010048Tropical Forest SoilIWATGLTDASGGARLRGYAWTGAVADEYWLALSPSPVYGSPGLRGRFARGSAAPFPAGKPPCAPSP*
Ga0126378_1100166423300010361Tropical Forest SoilPLGNHVWATGFTSATGSADLVGYSWTGAVTDLYWLTLDPSPVSRPPGLHGRFAAGQAAAFPSGQAPCALPS*
Ga0134128_1082631133300010373Terrestrial SoilGNDCSDVSPLPDKVWATGLAGPDGTADLTGYAWTGAVADRYWMTLDPAPDHPPGLHGRFAQGQAAPFPAGQGPCADR*
Ga0126381_10248968813300010376Tropical Forest SoilYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQATAFRSGQAPCALPS*
Ga0126369_1067542013300012971Tropical Forest SoilWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFASGQAPCALSS*
Ga0164309_1096795223300012984SoilDVSPLPDKVWAAGMAGADGKADLTGYAWTGPVADRYWITLDPSPGHPPGLHGRFAQGQATSFPAGQAPCADR*
Ga0157373_1097199223300013100Corn RhizosphereWASGLSGANGRADLTGYAWTGAVADRYWMTLDPAPGHPPGLHGRFARGQAASFPAGQGPCAD*
Ga0182036_1160180913300016270SoilGTADLVGYAWTGAVADRYWLVLDPSPDNPPPGLHGQFVQGRAAPFPASQAPCVPSP
Ga0182037_1076760113300016404SoilLTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAEGQATQFPAGQAPCAASP
Ga0187812_105807513300017821Freshwater SedimentRAELVGYAWTGAVADRYWLVLDPSQVNPPPGLRGQFAEGLAAPFPAGQAPCVPSA
Ga0187812_112977133300017821Freshwater SedimentADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGEFVQGRAAPFPASQAPCVPSP
Ga0187818_1020990513300017823Freshwater SedimentYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS
Ga0187807_100825753300017926Freshwater SedimentGYAWTGAVADRYWLVLDPSQVNPPPGLSGTFAEGRAAPFPAGQAPCVPSP
Ga0187807_103731113300017926Freshwater SedimentSWTGAVADRYWLVLDPSPASLPPGLHGQFAAGEATPFPAGQAPCASP
Ga0187807_105583913300017926Freshwater SedimentGRADLVGYAWTGAVADRYWLVLDPSQVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS
Ga0187806_123984713300017928Freshwater SedimentGRADLVGYAWTGAVADRYWLVLDPSQVNPPPGLRGQFAEGRAAPFPAGQAPCVPSA
Ga0187814_1000756563300017932Freshwater SedimentGLASANGRADLVGYAWTGAVADRYWLVLDPSQVNPPPGLSGTFAEGRAAPFPAGQAPCVPSP
Ga0187814_1022477633300017932Freshwater SedimentANGRADLVGYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS
Ga0187819_1030543933300017943Freshwater SedimentWATGLASANGTADLVGYAWTGAVADRYWLVLDPSPVNPPPGLHGEFVQGRAAPFPASQAPCVPSP
Ga0187779_1061492813300017959Tropical PeatlandGYAWTGAVADVYWLTLDPLPVARPPGLRGQFAAGRAAPFPAGQAPCAPSPP
Ga0187780_1013578813300017973Tropical PeatlandSPLGDHVWATGIADPLGAADLVGYAWTGAVADVYWLALDPLPVARPPGLRGQFAAGRAAPFPAGQAPCAPSPP
Ga0187816_1052097423300017995Freshwater SedimentADLVGYAWTGAVADFYWLALDPLPVERPPGLHGQFAEGRAAPYLAGQAPCAASP
Ga0187815_1009018413300018001Freshwater SedimentAWTGAVADRYWLVLDPSQVNPPPGLSGTFAEGRAAPFPAGQAPCVPSP
Ga0187768_103719713300020150Tropical PeatlandELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAEGLATPFPAGQPPCTSSPDR
Ga0210401_1155341213300020583SoilDPPPDDVWATGLAGADGTADLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS
Ga0210405_1074243813300021171SoilAGAAGVADLVGYAWTGATADRYWLTLDPSPVNPPPGLRGQFAQGQVAPFPVGQAPCAG
Ga0210408_1027867813300021178SoilAGVADLVGYAWTGAAADRYWLALDPSPVNPPPGLRGQFAQGQVAPFPAGQAPCAPSPAG
Ga0210393_1054073423300021401SoilSAVGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLRGQFAQGQVTPFPAGQAPCAPSE
Ga0210385_1100593623300021402SoilADLVGYAWTSAAADRYWLALDPSPVNPPPGLRGQFAQGQVTPFPAGQAPCAPSE
Ga0210387_1047196813300021405SoilWTGAAADRYWLALDPSPVNPPPGLRGQFAQGQVAPFPAGQAPCAPSPAG
Ga0210386_1023802313300021406SoilVWATGVTSAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGEATPFPAGQAPCAPSPAG
Ga0210390_1024219413300021474SoilAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGEATPFPAGQAPCAPSPAG
Ga0187846_1014780113300021476BiofilmDRYWLVLDPSPAAHPPGLDGQFAMGQATTFATGQAPCAT
Ga0210398_1064288413300021477SoilWATGVTSAAGVADLVGYAWTGAAADRYWLALDPSPVNPPPGLRGQFAQGQVAPFPAGQAPCAPSPAG
Ga0210398_1096309913300021477SoilGTADLTGYVWTGVVVDQYWLVLDPSPVNPPPGLRGQFIEGSAAPFPPSQAPCPTSP
Ga0210398_1119931823300021477SoilADPPPDDVWATGLAGADGTADLAGYTWTGAVADTYWLSLDPSPASAPPGLHGRFGQGQATPFPAGQAPCATAS
Ga0210410_1037352033300021479SoilTGVTSAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGEATPFPAGQAPCAPSPAG
Ga0212123_1055009623300022557Iron-Sulfur Acid SpringPLPDHVWATGVTSAAGVADLVGYAWTGAAADYYWLTLDPSPVNPPPGLHGQFTQGQLTPFLAGQAPCAPSPGG
Ga0222756_101894823300022709SoilVTSAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGEATPFPAGQAPCAPSPAG
Ga0207685_1041367823300025905Corn, Switchgrass And Miscanthus RhizosphereDVSPLPDKVWATGLAGADGRADLTGYAWTGAVADRYWMTLDPSPGHPPGLHGRFAQGQATSFPAGQAPCADR
Ga0207641_1108779113300026088Switchgrass RhizosphereGNDCSDVSPLPDKVWATGLAGPDGTADLTGYAWTGAVADRYWMTLDPAPDHPPGLHGRFAQGQAAPFPAGQGPCADR
Ga0257154_102662413300026467SoilTGVTSAAGVADLVGYAWTSAAADRYWLALDPSPVNPPPGLHGQFAQGQVTPFPAGQAPCAPSPAG
Ga0209648_1041935733300026551Grasslands SoilGVTSAAGAADLVGYAWTGAAADRYWLTLDPSPVNPPPGLRGQFGQGLVAPFPAGQAPCTPSAAG
Ga0208099_101102023300027096Forest SoilGSDCSTADPPPDDVWATGLAGADGTADLAGYTWTGAVADSYWLSLDPSPAGAPPGLHGRFGQGQATPFPAGQAPCATAS
Ga0209656_1037800323300027812Bog Forest SoilTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSP
Ga0209275_1076270413300027884SoilSTTAALPDHVWATGVAGAAGVADLVGYAWTGATADRYWLTLDPSPVNPPPGLRGQFAQGQVAPFPVGQAPCAG
Ga0308309_1044533323300028906SoilPDHVWATGVAGAAGVADLVGYAWTGATADRYWLTLDPSPVNPPPGLRGQFAQGQVAPFPVGQAPCAG
Ga0310037_1038497313300030494Peatlands SoilAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS
Ga0310038_1012236513300030707Peatlands SoilGNDCSTADPLPDDVWATGLAGANGRADLVGYAWTGAVADRYWLVLDPSPVNPPPGLSGPFAEGRAAPFPAGQAPCVPSS
Ga0307482_108902313300030730Hardwood Forest SoilTAPLPDHVWATGVTGAAGVADLVGYAWTGAAADRYWLTLDPSPVNPPPGLRGQFAQGQAAPFPAGQAPCAG
Ga0318538_1062474713300031546SoilSSPMPELTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP
Ga0318515_1012914713300031572SoilGGRPPAASAVSSPMPELTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP
Ga0318515_1034287423300031572SoilLGNHVWATGFTSATGSADLVGYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFPSGQAPCALSS
Ga0318555_1065676723300031640SoilSWTGAITDRYWLTLDPSPVSAPPGLRGQFAEGVADPFPPGQAPCAPST
Ga0318542_1013963323300031668SoilAAGSGDLTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP
Ga0310686_10646013213300031708SoilPDDVWASGLTGANGAADLVGYAWTGAVADSYWLVLDPQSVNRPPGLHGQFAEGRAAPYPAGQSPCPN
Ga0307474_1023693533300031718Hardwood Forest SoilTSAAGVADLVGYAWTGAAADRYWLTLDPSPVNPPPGLRGQFAQGKVAPFPAGQAPCAPSPAG
Ga0306917_1042680723300031719SoilGDLTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP
Ga0318502_1063017113300031747SoilPELTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP
Ga0307475_1025157743300031754Hardwood Forest SoilTDHVWATGVTGADGTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSP
Ga0318509_1079106813300031768SoilLGNHVWATGFTNPAGTAELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAAGQATQFPAGQAPCAASP
Ga0318498_1008074733300031778SoilGLASANGTADLVGYAWTGAVADRYWLVLDPSPVNPPPGLQGQFVQGRAAPFPASQAPCVPSP
Ga0318547_1014288013300031781SoilNPAGTAELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAAGQATPFPAGQAPCAASP
Ga0318547_1073677313300031781SoilPDDVWATGLASANGTADLVGYAWTGAVADRYWLVLDPSPVNPPPGLHGQFVQGRAAPFPASQAPCVPSP
Ga0318523_1019302523300031798SoilCSGGGPLGNHVWATGFTSATGSADLVGYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFPSGQAPCALSS
Ga0318565_1042183113300031799SoilADGTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPLP
Ga0318497_1068885423300031805SoilTADLVGYAWTGAVADRYWLVLDPSPVNPPPGLQGQFVQGRAAPFPASQAPCVPSP
Ga0318497_1078975513300031805SoilVTGADGTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPL
Ga0318567_1022920913300031821SoilGNHVWATGFTSAAGSADLVGYAWTGAVTDSYWLTLDPSPVSRPPGVHGRFAAGQATAFPSGQAPCALSS
Ga0307478_1018890543300031823Hardwood Forest SoilGVADLVGYAWTGAAADRYWLALDPSPVNPPPGLRGQFAQGRATPFPAGQAPCAPSPAG
Ga0307478_1048520933300031823Hardwood Forest SoilTGVTSAAGVADLVGYAWTGAAADRYWLTLDPSPVNPPPGLRGQFARGQVAPFPAGQAPCAPSPAG
Ga0318564_1021945923300031831SoilTSTAGSADLVGYSWTGAVTDSYWLTLDPSPLSRPPGLHGRFAAGQAAAFASGQAPCALPS
Ga0318495_1016537623300031860SoilAELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAAGQATPFPAGQAPCAASP
Ga0318551_1020262213300031896SoilRPPAASAVSSPMPELTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP
Ga0318551_1085380313300031896SoilTGADGTADLVGYAWTGALADQYWLTLDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPLP
Ga0308174_1092334213300031939SoilGLAGADGRADLTGYAWTGAVADRYWMTLDPAPRHPPGLHGRFARGQATSFPAGQGPCAGR
Ga0307479_1146370213300031962Hardwood Forest SoilATGVTGAAGVADLVGYAWTGAAADRYWLALDPSPVNPPPGLHGQFAEGRAAPFPAGQAPCAPSPAG
Ga0306922_1126215213300032001SoilGNHVWATGFTSATGSADLVGYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFPSGQAPCALSS
Ga0318570_1051578913300032054SoilDLVGYAWTGAVTDSYWLTLDPSPVSRPPGLHGRFAAGQAAAFASGQAPCALPS
Ga0318575_1011767123300032055SoilTAELTGYSWTGAVGDRYWLTLDPSPASRPPGLHGQFAAGQATQFPAGQAPCAASP
Ga0318514_1004162633300032066SoilAWTGAVTDSYWLTLDPSPVSRPPGVHGRFAAGQATAFPSGQAPCALSS
Ga0318553_1043482923300032068SoilDLVGYAWTGAVADRYWLVLDPSPVNPPPGLQGQFVQGRAAPFPASQAPCVPSP
Ga0308173_1151940723300032074SoilDLTGYAWTGAVADRYWMTLDPAPRHPPGLHGRFARGQATSFPAGKAPCADR
Ga0306924_1134724423300032076SoilPLGNHVWATGLAGPRGTADLTGYSWTGAVADLYWLTLDPSPAARPPGLYGQFAKGRAAPFAAGQAPCPSSP
Ga0318518_1033384913300032090SoilGFTSAAGSGDLTGYSWTGAVTDYYWLALDPSPVGRPPGLHGQFADGQAAPFPAGQAPCAPSP
Ga0335072_1139922613300032898SoilADLVGYAWTGAVADRYWLVLDPSPVNPPPGLRGLFVEGSGAPFPASQSPCATSP
Ga0335073_1124445823300033134SoilVWASGHTGANGTADLVGYPWTGAVADSYWLVLDPQSVNRPPGLHGQFAQGRAAPYPVGQSPCPG
Ga0318519_1053335113300033290SoilHVWATGLAGPRGTADLVGYAWTGAVADLYWLTLDPSPTERPPGLHGQFAEGRAAPFPAGQPPCPPSP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.