Metagenome / Metatranscriptome Family F089454

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089454
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	96 residues
Representative Sequence	ATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.42 %
% of genes near scaffold ends (potentially truncated)	90.83 %
% of genes from short scaffolds (< 2000 bps)	94.50 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.248 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil (11.927 % of family members)
Environment Ontology (ENVO)	Unclassified (31.193 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.532 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.98% β-sheet: 17.20% Coil/Unstructured: 68.82%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13564	DoxX_2	19.27
PF10129	OpgC_C	7.34
PF13676	TIR_2	3.67
PF01717	Meth_synt_2	2.75
PF03401	TctC	1.83
PF05995	CDO_I	1.83
PF10604	Polyketide_cyc2	1.83
PF05299	Peptidase_M61	1.83
PF09832	DUF2059	1.83
PF01381	HTH_3	0.92
PF14340	DUF4395	0.92
PF12681	Glyoxalase_2	0.92
PF00355	Rieske	0.92
PF07087	DUF1353	0.92
PF00753	Lactamase_B	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	2.75
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	1.83
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.83
COG3975	Predicted metalloprotease, contains C-terminal PDZ domain	General function prediction only [R]	1.83
COG5553	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	General function prediction only [R]	1.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	85.32 %
Unclassified	root	N/A	2.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	81.65 %
Unclassified	root	N/A	2.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	81.65 %
Unclassified	root	N/A	2.75 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	81.65 %
Unclassified	root	N/A	2.75 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	81.65 %
Unclassified	root	N/A	2.75 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	81.65 %
Unclassified	root	N/A	2.75 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004061\|Ga0055487_10021765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	892	Open in IMG/M
3300004157\|Ga0062590_101375504	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	700	Open in IMG/M
3300004463\|Ga0063356_101112487	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300004643\|Ga0062591_100707443	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300004778\|Ga0062383_10087323	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300004782\|Ga0062382_10339931	Not Available	694	Open in IMG/M
3300005289\|Ga0065704_10558227	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	630	Open in IMG/M
3300005332\|Ga0066388_101532267	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1168	Open in IMG/M
3300005335\|Ga0070666_11063993	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	601	Open in IMG/M
3300005444\|Ga0070694_101917701	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	506	Open in IMG/M
3300005536\|Ga0070697_100188739	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1749	Open in IMG/M
3300005536\|Ga0070697_100432528	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1145	Open in IMG/M
3300005546\|Ga0070696_101197575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	642	Open in IMG/M
3300005713\|Ga0066905_101579353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	600	Open in IMG/M
3300005830\|Ga0074473_10958057	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005843\|Ga0068860_101085829	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	819	Open in IMG/M
3300005844\|Ga0068862_101491031	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	681	Open in IMG/M
3300006049\|Ga0075417_10316942	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	759	Open in IMG/M
3300006163\|Ga0070715_10503288	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	694	Open in IMG/M
3300006358\|Ga0068871_101136012	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	731	Open in IMG/M
3300006580\|Ga0074049_11057976	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300006904\|Ga0075424_102073385	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	600	Open in IMG/M
3300006914\|Ga0075436_100286532	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1178	Open in IMG/M
3300006969\|Ga0075419_10445686	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	893	Open in IMG/M
3300009094\|Ga0111539_12047625	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	664	Open in IMG/M
3300009147\|Ga0114129_11678573	Not Available	776	Open in IMG/M
3300009162\|Ga0075423_11147848	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	828	Open in IMG/M
3300009610\|Ga0105340_1043140	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300010046\|Ga0126384_11317460	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	670	Open in IMG/M
3300010304\|Ga0134088_10175064	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1025	Open in IMG/M
3300010360\|Ga0126372_12581012	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	559	Open in IMG/M
3300010360\|Ga0126372_12868945	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300010362\|Ga0126377_10680175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1080	Open in IMG/M
3300010366\|Ga0126379_10494059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1294	Open in IMG/M
3300010366\|Ga0126379_13016056	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300010398\|Ga0126383_12508879	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	600	Open in IMG/M
3300010403\|Ga0134123_12202976	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	613	Open in IMG/M
3300011398\|Ga0137348_1081583	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	558	Open in IMG/M
3300011427\|Ga0137448_1152720	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	641	Open in IMG/M
3300011444\|Ga0137463_1133763	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	933	Open in IMG/M
3300012041\|Ga0137430_1061389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1029	Open in IMG/M
3300012179\|Ga0137334_1077684	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	732	Open in IMG/M
3300012198\|Ga0137364_11243396	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	556	Open in IMG/M
3300012205\|Ga0137362_10833881	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	789	Open in IMG/M
3300012205\|Ga0137362_10967133	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	726	Open in IMG/M
3300012208\|Ga0137376_10746389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	844	Open in IMG/M
3300012228\|Ga0137459_1175708	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	630	Open in IMG/M
3300012349\|Ga0137387_11321017	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	503	Open in IMG/M
3300012350\|Ga0137372_10053526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3553	Open in IMG/M
3300012350\|Ga0137372_10237660	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1439	Open in IMG/M
3300012353\|Ga0137367_10239260	Not Available	1307	Open in IMG/M
3300012479\|Ga0157348_1025272	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300012512\|Ga0157327_1010165	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	882	Open in IMG/M
3300012685\|Ga0137397_10720883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	741	Open in IMG/M
3300012923\|Ga0137359_11678105	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523	Open in IMG/M
3300012929\|Ga0137404_10263842	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1482	Open in IMG/M
3300012972\|Ga0134077_10307652	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	667	Open in IMG/M
3300012986\|Ga0164304_10433886	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	942	Open in IMG/M
3300015255\|Ga0180077_1089295	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	645	Open in IMG/M
3300015372\|Ga0132256_103552244	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300016319\|Ga0182033_10417892	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1137	Open in IMG/M
3300016357\|Ga0182032_10886076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	758	Open in IMG/M
3300018053\|Ga0184626_10038229	All Organisms → cellular organisms → Bacteria → Proteobacteria	1990	Open in IMG/M
3300018067\|Ga0184611_1057895	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1302	Open in IMG/M
3300018067\|Ga0184611_1075168	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300018072\|Ga0184635_10256623	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	691	Open in IMG/M
3300018075\|Ga0184632_10197533	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	886	Open in IMG/M
3300018084\|Ga0184629_10347852	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	780	Open in IMG/M
3300018422\|Ga0190265_10184335	All Organisms → cellular organisms → Bacteria	2081	Open in IMG/M
3300018422\|Ga0190265_12487273	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	617	Open in IMG/M
3300018429\|Ga0190272_10330901	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300018465\|Ga0190269_11657497	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	537	Open in IMG/M
3300019238\|Ga0180112_1264479	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M
3300019998\|Ga0193710_1025588	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M
3300020583\|Ga0210401_10902367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	743	Open in IMG/M
3300021081\|Ga0210379_10218372	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	824	Open in IMG/M
3300021406\|Ga0210386_10889784	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	763	Open in IMG/M
3300021411\|Ga0193709_1097889	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	633	Open in IMG/M
3300022309\|Ga0224510_10616431	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	637	Open in IMG/M
3300022756\|Ga0222622_11034381	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	604	Open in IMG/M
3300025922\|Ga0207646_11394595	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	610	Open in IMG/M
3300025922\|Ga0207646_11676158	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	547	Open in IMG/M
3300025930\|Ga0207701_10081373	All Organisms → cellular organisms → Bacteria	2928	Open in IMG/M
3300025933\|Ga0207706_11038022	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	687	Open in IMG/M
3300026118\|Ga0207675_101455138	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300027843\|Ga0209798_10388402	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	654	Open in IMG/M
3300028381\|Ga0268264_12457881	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	526	Open in IMG/M
3300031562\|Ga0310886_10593783	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	679	Open in IMG/M
3300031720\|Ga0307469_10089455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2119	Open in IMG/M
3300031720\|Ga0307469_11908480	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	575	Open in IMG/M
3300031740\|Ga0307468_100333481	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1121	Open in IMG/M
3300031754\|Ga0307475_10301285	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1287	Open in IMG/M
3300031820\|Ga0307473_10380357	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	918	Open in IMG/M
3300031820\|Ga0307473_11546922	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	504	Open in IMG/M
3300031852\|Ga0307410_11193588	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300031941\|Ga0310912_10244848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1379	Open in IMG/M
3300031962\|Ga0307479_10199305	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1971	Open in IMG/M
3300032174\|Ga0307470_10651796	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	795	Open in IMG/M
3300032174\|Ga0307470_11299622	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	596	Open in IMG/M
3300032180\|Ga0307471_100140166	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2301	Open in IMG/M
3300032180\|Ga0307471_100930127	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1037	Open in IMG/M
3300032205\|Ga0307472_100061771	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2397	Open in IMG/M
3300032205\|Ga0307472_100969978	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	793	Open in IMG/M
3300033414\|Ga0316619_10713291	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	848	Open in IMG/M
3300033485\|Ga0316626_10990619	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300034150\|Ga0364933_025936	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300034151\|Ga0364935_0235688	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	595	Open in IMG/M
3300034354\|Ga0364943_0198611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	737	Open in IMG/M
3300034417\|Ga0364941_160741	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	569	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.57%
Host-Associated	Host-Associated	17.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.47%
Aquatic	Environmental → Aquatic	21.10%
Plants	Host-Associated → Plants	17.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.80%
Sediment	Environmental → Aquatic → Sediment	14.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.42%
Freshwater	Environmental → Aquatic → Freshwater	4.59%
Floodplain	Environmental → Terrestrial → Floodplain	3.67%
Marine	Environmental → Aquatic → Marine	1.83%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.68%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.50%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%
Sediment	Environmental → Aquatic → Marine → Sediment	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.09%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.50%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.92%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004061	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011398	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012479	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610	Environmental	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015255	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT466_16_10D	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019998	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055487_100217652	3300004061	Natural And Restored Wetlands	LGFELLSRGRHAESNRNQATMRMASGQYLILSEAPFGPKGYPMSRKIPGPHLGFYVAPDQWRAALVQLDRLGIANGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYITEGMQ*
Ga0062590_1013755041	3300004157	Soil	MSMASGQFLILTEAPFGPKGYPMSRKIPGPHLGFYVAPQQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYITEGMQ*
Ga0063356_1011124873	3300004463	Arabidopsis Thaliana Rhizosphere	HDAKSSRNQAVLRMASGQNLFLTEAPFGPKGYPMSRKIPGPHLGFYVAPHQWREALAQLDSLGIPHGDRGEEAKGRHAGGNTGTYMDDPAGYVIQYISEGMQ*
Ga0062591_1007074431	3300004643	Soil	PFGPKGYPMSRKIPGPHLGFYVAPQQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYNTEGMQ*
Ga0062383_100873233	3300004778	Wetland Sediment	QASMCMASGQYLILTEAPFGPKGYPMSRKIPGPHLGFYVAPQQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGNVIQYITEGMS*
Ga0062382_103399311	3300004782	Wetland Sediment	FGPKGYPMSRKIPGPHLGFYVAPQQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGNVIQYITEGMS*
Ga0065704_105582271	3300005289	Switchgrass Rhizosphere	DAQSNKTQASMRMESGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAHWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0066388_1015322671	3300005332	Tropical Forest Soil	ATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0070666_110639932	3300005335	Switchgrass Rhizosphere	VMRMGGGQYLILTETPFGPKGYPMSRKIPGPHLGFYVAPGDWKQALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0070694_1019177011	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GFKVLERGRDTQSNHPQATLRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0070697_1001887391	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	QYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALDQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0070697_1004325281	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PFGPKGYPMSRLIPGPHLGFYVAPTQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0070696_1011975751	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	TPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0066905_1015793531	3300005713	Tropical Forest Soil	SNKAQASMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPQDWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0074473_109580573	3300005830	Sediment (Intertidal)	IKFYEAVLGFELLNRGQDAKTNRNQAAMRMASGQYLLLTESSFGPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYITEGML*
Ga0068860_1010858292	3300005843	Switchgrass Rhizosphere	NKTQATMRMASGQVLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0068862_1014910311	3300005844	Switchgrass Rhizosphere	KTQATMRMASGQVLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0075417_103169421	3300006049	Populus Rhizosphere	NKPQATMRMATGQFLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0070715_105032881	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPARWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0068871_1011360121	3300006358	Miscanthus Rhizosphere	LGFNLIERKRDGQSNKTQAVMRMGGGQYLILTETPFGPKGYPMSRKIPGPHLGFYVAPGDWKQALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0074049_110579761	3300006580	Soil	FYEAVLGFELLSRGQDAKSKSNQAAMRMASGQHLILTEAPFGPKGYPMSRKIPGPHLGFYVAPQQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYITEGMQ*
Ga0075424_1020733851	3300006904	Populus Rhizosphere	MRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPTQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0075436_1002865322	3300006914	Populus Rhizosphere	TQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0075419_104456861	3300006969	Populus Rhizosphere	NKTQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAHWKEALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0111539_120476251	3300009094	Populus Rhizosphere	AQSNKPQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0114129_116785731	3300009147	Populus Rhizosphere	EFYEQVLGFKVLERGRDAQSHKTQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWEDALVQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0075423_111478481	3300009162	Populus Rhizosphere	EPGRDAQSNKTQATMRMASGQYLILTEMPFGPKGYPMSRLIPGPHLGFYVAPAQWEDALVQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0105340_10431405	3300009610	Soil	QYLILTESAFRPKGYPMSRKIPGPHLGFYVAPAQWLDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ*
Ga0126384_113174602	3300010046	Tropical Forest Soil	NKAQASMRMTSGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPQDWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0134088_101750642	3300010304	Grasslands Soil	LILTETPFGPKGYPMSRLIPGPHLGFYVAPASWKEALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0126372_125810122	3300010360	Tropical Forest Soil	SGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0126372_128689451	3300010360	Tropical Forest Soil	FKLLERGHDAQSNKAQASMRMTSGQYLILTETPFGSKGYPMSRLIPGPHLGFYVAPQDWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0126377_106801751	3300010362	Tropical Forest Soil	SGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAPWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0126379_104940591	3300010366	Tropical Forest Soil	FGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0126379_130160561	3300010366	Tropical Forest Soil	NKTQATMRMGSGQYLILTETPFGPKGYPMSRRIPGPHLGFYVAPADWHEALARLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0126383_125088791	3300010398	Tropical Forest Soil	NKTQATMRMGSGQYLILTETPFGPKGYPMSRRIPGPHLGFYVAPADWHEVLARLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0134123_122029761	3300010403	Terrestrial Soil	MSMASGQFLILTEAPFGPKGYPMSRKIPGPHLGFYVAPQQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYITEGMD*
Ga0137348_10815831	3300011398	Soil	ILTESAFRPKGYPMSRKIPGPHLGFYVAPAQWLDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ*
Ga0137448_11527202	3300011427	Soil	AMRMASGQYLILTESDFRPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ*
Ga0137463_11337631	3300011444	Soil	GVGYLELEAPNLDGSIKFYEQVLGFNLLGRGRDTRTDQAQATLRMASGQYLLLTETGFGPKGFPMSRLIPGPHLGFYVAPQQWREALAQLDRLKIPNGDRGAEAKGRTPGGTAGTYMDDPAGYVIQYITEGME*
Ga0137430_10613891	3300012041	Soil	ASGSRTTMQMASGQCLVLTKTPFSPKGLPMSRTIPGPHLGFYVPHGQWSEALALLDRLGIANGDRGVEAKDRHTDGTAGTYMDDPAGYVIQYITDGMQ*
Ga0137334_10776841	3300012179	Soil	TMQMASGQCLMLTKTPFSPKGLPMSRTIPGPHLGFYVPHRQWSEALALLDRLGIANGDRGVEAKDRHTDGTAGTYMDDPAGYVIQYITDGMQ*
Ga0137364_112433961	3300012198	Vadose Zone Soil	EQVLGFKLLDRGRDEQSNNPQATMRMASGQFLVLTEMPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGTQGTYMDDPAGYVIQYITEGMQ*
Ga0137362_108338811	3300012205	Vadose Zone Soil	PFGPKGYPMSRLIPGPHLGFYVAPAQWKDALTQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0137362_109671332	3300012205	Vadose Zone Soil	PFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0137376_107463892	3300012208	Vadose Zone Soil	PQATMRMASGQFLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWNDALAQLDRLGIPNGDRGEEAKGRAPGGTQGTYMDDPAGYVIQYITEGMQ*
Ga0137459_11757082	3300012228	Soil	LILTESAFRPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ*
Ga0137387_113210171	3300012349	Vadose Zone Soil	VGYLDLEAPKLDASIKFYEQVLSFKLLERGRDAQSNKTQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAHWKDALAQLDRLGIPNGDRGEEAKGRTPGGTQGTYMDDPAGYVIQYITEGMQ*
Ga0137372_100535265	3300012350	Vadose Zone Soil	YLILTETLFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLNRLGIPNGDRGQAAKGRTPDGTQGTYMDDPAGYVIQYITEGMQ*
Ga0137372_102376602	3300012350	Vadose Zone Soil	YLILTETLFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEAAKGRTPDGTQGTYMDDPAGYVIQYITEGMQ*
Ga0137367_102392602	3300012353	Vadose Zone Soil	FYEQVLGFKVLERGRDAQSNKTQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAHWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0157348_10252721	3300012479	Unplanted Soil	ILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0157327_10101652	3300012512	Arabidopsis Rhizosphere	FGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0137397_107208832	3300012685	Vadose Zone Soil	DRGRDAQSNKTQATMRMASGQYLILTETLFGPKGYPMSRLIPGPHLGFYVAPANWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYIPEGMQ*
Ga0137359_116781051	3300012923	Vadose Zone Soil	PFGPKGYPMSRLIPGPHLGFYVAAAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0137404_102638422	3300012929	Vadose Zone Soil	PQATMRMASGQFLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0134077_103076521	3300012972	Grasslands Soil	ILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0164304_104338861	3300012986	Soil	DAQSNKTQATLRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0180077_10892951	3300015255	Soil	LDIKTNRNQAAMRMASGQYLILTESAFRPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ*
Ga0132256_1035522441	3300015372	Arabidopsis Rhizosphere	GFKVLERGRDAQSHKTQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ*
Ga0182033_104178921	3300016319	Soil	MRMASGQYLILMETPFGPKGYPMSRLIPGPHLGFYVAPVNWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0182032_108860761	3300016357	Soil	HGRDAQSNKIQATMWMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPVNWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0184626_100382291	3300018053	Groundwater Sediment	ASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0184611_10578952	3300018067	Groundwater Sediment	GRDAQSNKTQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVTPANWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0184611_10751682	3300018067	Groundwater Sediment	GPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0184635_102566231	3300018072	Groundwater Sediment	TETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0184632_101975331	3300018075	Groundwater Sediment	AQSNKTQASMRMASGQYLILTETPFGPKGYPMSRLIAGPHLGFYVAPAQWKDALAQLERLAIPNGDRGEEAKGRTPGGTQGTYMDDPAGYVIQYITEGMQ
Ga0184629_103478522	3300018084	Groundwater Sediment	VLGFNLLGRGRETRTGQAQATMRMASGQYLVLTETGFGPKGFPMSRLIPGPHLGFYIAPQQWGEALAQLDRLGIPNGDRGAEAKGRTPGGTAGTYMDDPAGYVIQYITEGME
Ga0190265_101843355	3300018422	Soil	QATMRMASGQYLILTEASFSPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIANGDRGEEAKGRHPGGTSGTYMDDPAGYVIQYITEGMQ
Ga0190265_124872731	3300018422	Soil	IKFYEQVLGFKVLERGHDAQSNKTQASMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVASAHWKDALAQLDRLGIPNGDRGEEAKGRAPGGSQGTYMDDPAGYVIQYITEGMQ
Ga0190272_103309011	3300018429	Soil	AAMRMASGQYLILTESDFRPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ
Ga0190269_116574971	3300018465	Soil	KFYQSVLGFELVNRGREVKSDRNQATMRMASGQYLILTEASFGPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIANGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYITEGMQ
Ga0180112_12644792	3300019238	Groundwater Sediment	ESIKFYQAVLGFELLNRGLDIKTARYQATMRMASGQYLILTESAFRPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ
Ga0193710_10255881	3300019998	Soil	LTGTPFGPKGYHTSRLIPGPHLGFYVAPAQWKDALAQLDRLDIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0210401_109023672	3300020583	Soil	VLGFKLLEQGRDAQSNKAQATMRMASGQYLILTETPFGPKGYPMSRLTPGPHLGFYVAPTQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0210379_102183722	3300021081	Groundwater Sediment	FYQAVLGFELLNRGLEIKTNRNQAAMRMASGQYLILTESDFRPKGYPMSRKIPGPHLGFYVAPAQWRAALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ
Ga0210386_108897842	3300021406	Soil	GRDAQSNKAQATMRMASGQYLILTETPFGPKGYPMSRLTPGPHLGFYVAPTQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0193709_10978891	3300021411	Soil	YLILTETPFGPKGYPMSRLIPGPHLGFYVAPGQWKDALAQLDRLDIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0224510_106164312	3300022309	Sediment	LGFELLGCGEDSKSHRRQASMRMVSGQYLILTETSFGPKGYPMSRKIPGPHLGFYVAPQQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGNVIQYITEGMS
Ga0222622_110343811	3300022756	Groundwater Sediment	NKPQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPGQWKDALAQLDRLDIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0207646_113945951	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	FGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGSQGTYMDDPAGHVIQYITEGMQ
Ga0207646_116761581	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0207701_100813734	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	ERGRDAQSNKTQATMRMASGQVLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0207706_110380221	3300025933	Corn Rhizosphere	ETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0207675_1014551382	3300026118	Switchgrass Rhizosphere	PKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGTQGTYMDDPAGYVIQYITEGMQ
Ga0209798_103884022	3300027843	Wetland Sediment	DDSIKFYQAVLGFELLNRGQDAKSGRNQASMCMASGQYLILTEAPFGPKGYPMSRKIPGPHLGFYVAPQQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGNVIQYITEGM
Ga0268264_124578811	3300028381	Switchgrass Rhizosphere	NKTQATMRMASGQVLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0310886_105937831	3300031562	Soil	ASIRFYEQVLGFNVLERGRDAQSNKTQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307469_100894551	3300031720	Hardwood Forest Soil	LGFKLLERGRDAQSNKMQATMRMASGQYLILTEKPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGSQGTYMDDPAGHVIDRR
Ga0307469_119084801	3300031720	Hardwood Forest Soil	QVLSLMETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307468_1003334811	3300031740	Hardwood Forest Soil	ETLFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307475_103012852	3300031754	Hardwood Forest Soil	MRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAAAQWKDALDQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307473_103803571	3300031820	Hardwood Forest Soil	MRMASGQYLILTEKPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGSQGTYMDDPAGHVIQYITEGMQ
Ga0307473_115469221	3300031820	Hardwood Forest Soil	LERGRDAQSNKTQAIMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307410_111935882	3300031852	Rhizosphere	NLFLTEAPFGPKGYPMSRKIPGPHLGFYVAPHQWREALAQLDSLGIPHGDRGEEAKGRHAGGNTGTYMDDPAGYVIQYISEGMQ
Ga0310912_102448481	3300031941	Soil	QATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPVNWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307479_101993051	3300031962	Hardwood Forest Soil	EQVLGFKLLERGRDAQSNKTQATMRMASGQYLILTEKPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGSQGTYMDDPAGHVIQYITEGMQ
Ga0307470_106517962	3300032174	Hardwood Forest Soil	SNKPQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLERLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307470_112996221	3300032174	Hardwood Forest Soil	TMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPARWKDALDQLDRLGIPNGGRGEEAKGRTPGGTQGTYMDDPAGYVIQYITEGMQ
Ga0307471_1001401661	3300032180	Hardwood Forest Soil	LGFKLLERGRDAQSNKMQATMRMASGQYLILTEKPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGSQGTYMDDPAGHVIQYITEGMQ
Ga0307471_1009301272	3300032180	Hardwood Forest Soil	TPFGPKGYPMSRLIPGPHLGFYVAPTQWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307472_1000617712	3300032205	Hardwood Forest Soil	QYLILTETPFGPKGYPMSRLIPGPHLGFYVAPEQWKDALDQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0307472_1009699782	3300032205	Hardwood Forest Soil	RGRDAQSNKTQATMRMASGQYLILTEKPFGPKGYPMSRLIPGPHLGFYVAPAQWKDALAQLDRLGIPNGDRGEEAKGRTPGGSQGTYMDDPAGHVIQYITEGMQ
Ga0316619_107132912	3300033414	Soil	RMASGQNLILSEAPFGPKGYPMSRNIPGPHLGFYVAPKQWRDALAQLDRLGIPNGDRGEEAKGRHPGGAAGTYMDDPSGYVIQYITDGMQ
Ga0316626_109906192	3300033485	Soil	QDAKSNRNQAAMRMAKGQFLILTEAPFGPKGYPMSRKIPGPHLGFYVAPEQWRGALAQLDRLGIPNGDRGEEAKLRHPGATAGTYMDDPAGYVIQYITEGMQ
Ga0364933_025936_49_324	3300034150	Sediment	MRMASGQYLILTESAFRPKGYPMSRKIPGPHLGFYVVPAQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ
Ga0364935_0235688_9_284	3300034151	Sediment	MRMASGQYLILTESAFRPKGYPMSRKIPGPHLGFYVAPAPWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ
Ga0364943_0198611_11_349	3300034354	Sediment	VLGFKLLDRGRDAQSNKTQATMRMASGQYLILTETPFGPKGYPMSRLIPGPHLGFYVAPAYWKDALAQLDRLGIPNGDRGEEAKGRTPGGNQGTYMDDPAGYVIQYITEGMQ
Ga0364941_160741_260_535	3300034417	Sediment	MRMASGQYLILTESAFRPKGYPMSRKIPGPHLGFYVAPAQWRDALAQLDRLGIPNGDRGEEAKGRHPGGTAGTYMDDPAGYVIQYISEGMQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089454

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences