Metagenome Family F089426

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089426
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	38 residues
Representative Sequence	MLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSCIF
Number of Associated Samples	60
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.57 %
% of genes near scaffold ends (potentially truncated)	20.18 %
% of genes from short scaffolds (< 2000 bps)	79.82 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.220 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (41.284 % of family members)
Environment Ontology (ENVO)	Unclassified (91.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (85.321 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.62% β-sheet: 0.00% Coil/Unstructured: 55.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00476	DNA_pol_A	63.30
PF01612	DNA_pol_A_exo1	7.34
PF13361	UvrD_C	1.83
PF11753	DUF3310	0.92
PF01597	GCV_H	0.92
PF01636	APH	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	63.30
COG0509	Glycine cleavage system protein H (lipoate-binding)	Amino acid transport and metabolism [E]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
All Organisms	root	All Organisms	35.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
Viruses	superkingdom	All Organisms → Viruses	29.36 %
cellular organisms	root	All Organisms → cellular organisms	6.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	20.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.42 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	20.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.59 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	20.18 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.83 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	20.18 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.83 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	20.18 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.83 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	20.18 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.92 %
Autographiviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	0.92 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.22 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	20.18 %
Fussvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Fussvirus	0.92 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.92 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000148\|SI47jul10_100mDRAFT_c1026121	All Organisms → Viruses → environmental samples → uncultured virus	908	Open in IMG/M
3300001450\|JGI24006J15134_10033088	All Organisms → Viruses → environmental samples → uncultured virus	2248	Open in IMG/M
3300001450\|JGI24006J15134_10097405	Not Available	1063	Open in IMG/M
3300001683\|GBIDBA_10100220	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1484	Open in IMG/M
3300001743\|JGI24515J20084_1005385	All Organisms → cellular organisms → Bacteria → Proteobacteria	1167	Open in IMG/M
3300006083\|Ga0081762_1085097	All Organisms → Viruses → environmental samples → uncultured virus	545	Open in IMG/M
3300006164\|Ga0075441_10073858	Not Available	1326	Open in IMG/M
3300006164\|Ga0075441_10104822	Not Available	1083	Open in IMG/M
3300006190\|Ga0075446_10092993	Not Available	890	Open in IMG/M
3300006304\|Ga0068504_1343918	Not Available	641	Open in IMG/M
3300006308\|Ga0068470_1149408	All Organisms → Viruses → environmental samples → uncultured virus	1332	Open in IMG/M
3300006308\|Ga0068470_1149409	Not Available	609	Open in IMG/M
3300006310\|Ga0068471_1103868	Not Available	5435	Open in IMG/M
3300006310\|Ga0068471_1232934	All Organisms → cellular organisms → Bacteria → Proteobacteria	2980	Open in IMG/M
3300006310\|Ga0068471_1417664	Not Available	2008	Open in IMG/M
3300006310\|Ga0068471_1427911	Not Available	1858	Open in IMG/M
3300006310\|Ga0068471_1504939	Not Available	1658	Open in IMG/M
3300006310\|Ga0068471_1645806	Not Available	2229	Open in IMG/M
3300006324\|Ga0068476_1185367	Not Available	825	Open in IMG/M
3300006336\|Ga0068502_1314936	All Organisms → Viruses → environmental samples → uncultured virus	1947	Open in IMG/M
3300006336\|Ga0068502_1424104	Not Available	933	Open in IMG/M
3300006336\|Ga0068502_1490573	All Organisms → Viruses → environmental samples → uncultured virus	1182	Open in IMG/M
3300006338\|Ga0068482_1259803	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	3027	Open in IMG/M
3300006340\|Ga0068503_10242306	Not Available	8166	Open in IMG/M
3300006340\|Ga0068503_10248234	All Organisms → cellular organisms → Bacteria → Proteobacteria	3820	Open in IMG/M
3300006340\|Ga0068503_10274813	Not Available	1455	Open in IMG/M
3300006340\|Ga0068503_10282560	Not Available	5657	Open in IMG/M
3300006340\|Ga0068503_10321056	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300006340\|Ga0068503_10432226	Not Available	1594	Open in IMG/M
3300006340\|Ga0068503_10432227	All Organisms → cellular organisms → Bacteria → Proteobacteria	3989	Open in IMG/M
3300006340\|Ga0068503_10444528	All Organisms → Viruses → environmental samples → uncultured virus	1005	Open in IMG/M
3300006340\|Ga0068503_10444529	Not Available	703	Open in IMG/M
3300006340\|Ga0068503_10444591	Not Available	1072	Open in IMG/M
3300006340\|Ga0068503_10480986	Not Available	2652	Open in IMG/M
3300006340\|Ga0068503_10498322	All Organisms → Viruses → environmental samples → uncultured virus	1580	Open in IMG/M
3300006340\|Ga0068503_10553166	All Organisms → Viruses	2485	Open in IMG/M
3300006340\|Ga0068503_10561405	All Organisms → Viruses → environmental samples → uncultured virus	532	Open in IMG/M
3300006340\|Ga0068503_10563667	Not Available	640	Open in IMG/M
3300006340\|Ga0068503_10588638	Not Available	795	Open in IMG/M
3300006340\|Ga0068503_10594759	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300006340\|Ga0068503_10749652	Not Available	1253	Open in IMG/M
3300006340\|Ga0068503_10818114	Not Available	796	Open in IMG/M
3300006340\|Ga0068503_10851824	Not Available	630	Open in IMG/M
3300006753\|Ga0098039_1122140	Not Available	894	Open in IMG/M
3300006754\|Ga0098044_1208947	All Organisms → Viruses → environmental samples → uncultured virus	765	Open in IMG/M
3300006902\|Ga0066372_10408885	Not Available	786	Open in IMG/M
3300006947\|Ga0075444_10151188	Not Available	973	Open in IMG/M
3300006947\|Ga0075444_10202513	Not Available	801	Open in IMG/M
3300006947\|Ga0075444_10282889	All Organisms → Viruses → environmental samples → uncultured virus	644	Open in IMG/M
3300008221\|Ga0114916_1122445	Not Available	607	Open in IMG/M
3300008470\|Ga0115371_11023259	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Fussvirus	632	Open in IMG/M
3300009149\|Ga0114918_10104877	All Organisms → Viruses → environmental samples → uncultured virus	1750	Open in IMG/M
3300009149\|Ga0114918_10133556	Not Available	1499	Open in IMG/M
3300009173\|Ga0114996_10787433	Not Available	689	Open in IMG/M
3300009173\|Ga0114996_11286220	Not Available	509	Open in IMG/M
3300009173\|Ga0114996_11292959	Not Available	507	Open in IMG/M
3300009409\|Ga0114993_10526251	All Organisms → Viruses → environmental samples → uncultured virus	876	Open in IMG/M
3300009409\|Ga0114993_11062950	Not Available	574	Open in IMG/M
3300009409\|Ga0114993_11121657	Not Available	556	Open in IMG/M
3300009420\|Ga0114994_10386028	All Organisms → Viruses → environmental samples → uncultured virus	928	Open in IMG/M
3300009420\|Ga0114994_10988418	Not Available	544	Open in IMG/M
3300009425\|Ga0114997_10005669	Not Available	9472	Open in IMG/M
3300009425\|Ga0114997_10320309	Not Available	853	Open in IMG/M
3300009425\|Ga0114997_10425581	All Organisms → Viruses → environmental samples → uncultured virus	715	Open in IMG/M
3300009432\|Ga0115005_11697290	Not Available	519	Open in IMG/M
3300009595\|Ga0105214_103750	All Organisms → Viruses → environmental samples → uncultured virus	869	Open in IMG/M
3300009622\|Ga0105173_1044070	Not Available	739	Open in IMG/M
3300009705\|Ga0115000_10166108	Not Available	1466	Open in IMG/M
3300009705\|Ga0115000_10715667	Not Available	618	Open in IMG/M
3300009706\|Ga0115002_11227318	Not Available	506	Open in IMG/M
3300009786\|Ga0114999_10596392	Not Available	839	Open in IMG/M
3300009786\|Ga0114999_11191436	Not Available	543	Open in IMG/M
3300010883\|Ga0133547_10550971	Not Available	2317	Open in IMG/M
3300010883\|Ga0133547_11679697	All Organisms → Viruses → environmental samples → uncultured virus	1181	Open in IMG/M
3300017775\|Ga0181432_1302568	Not Available	507	Open in IMG/M
3300020303\|Ga0211692_1019205	Not Available	913	Open in IMG/M
(restricted) 3300022902\|Ga0233429_1044500	All Organisms → Viruses	2131	Open in IMG/M
3300024262\|Ga0210003_1110501	All Organisms → Viruses	1234	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10114447	All Organisms → Viruses → environmental samples → uncultured virus	1384	Open in IMG/M
3300025039\|Ga0207878_110727	Not Available	1097	Open in IMG/M
3300025039\|Ga0207878_114190	Not Available	914	Open in IMG/M
3300025045\|Ga0207901_1031403	Not Available	720	Open in IMG/M
3300025050\|Ga0207892_1010917	Not Available	957	Open in IMG/M
3300025050\|Ga0207892_1027753	Not Available	646	Open in IMG/M
3300025052\|Ga0207906_1053455	Not Available	538	Open in IMG/M
3300025078\|Ga0208668_1004583	Not Available	3275	Open in IMG/M
3300025114\|Ga0208433_1017664	Not Available	2050	Open in IMG/M
3300025168\|Ga0209337_1009552	All Organisms → Viruses	6217	Open in IMG/M
3300025168\|Ga0209337_1043384	Not Available	2387	Open in IMG/M
3300025168\|Ga0209337_1139814	All Organisms → Viruses → environmental samples → uncultured virus	1064	Open in IMG/M
3300025168\|Ga0209337_1332903	Not Available	530	Open in IMG/M
3300025237\|Ga0208031_1040719	Not Available	597	Open in IMG/M
3300025897\|Ga0209425_10043912	Not Available	3063	Open in IMG/M
3300027687\|Ga0209710_1124719	Not Available	973	Open in IMG/M
3300027714\|Ga0209815_1225966	Not Available	570	Open in IMG/M
3300027779\|Ga0209709_10028262	All Organisms → Viruses	3528	Open in IMG/M
3300027801\|Ga0209091_10033948	Not Available	3093	Open in IMG/M
3300027813\|Ga0209090_10507736	All Organisms → Viruses → environmental samples → uncultured virus	560	Open in IMG/M
3300027839\|Ga0209403_10394877	All Organisms → Viruses → environmental samples → uncultured virus	729	Open in IMG/M
3300027839\|Ga0209403_10641147	Not Available	507	Open in IMG/M
3300027844\|Ga0209501_10523802	All Organisms → Viruses	675	Open in IMG/M
3300031601\|Ga0307992_1065470	All Organisms → Viruses	1529	Open in IMG/M
3300031627\|Ga0302118_10323915	Not Available	707	Open in IMG/M
3300031658\|Ga0307984_1067769	Not Available	1082	Open in IMG/M
3300031659\|Ga0307986_10451781	Not Available	502	Open in IMG/M
3300031801\|Ga0310121_10178977	All Organisms → Viruses	1304	Open in IMG/M
3300031801\|Ga0310121_10336621	Not Available	874	Open in IMG/M
3300032360\|Ga0315334_11670623	Not Available	543	Open in IMG/M
3300034629\|Ga0326756_027471	All Organisms → Viruses → environmental samples → uncultured virus	678	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.08%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	80.73%
Unclassified	Environmental → Aquatic → Marine → Unclassified	11.01%
Inlet	Environmental → Aquatic → Marine → Inlet	1.83%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.83%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	1.83%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.92%
Strait	Environmental → Aquatic → Marine → Strait	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	46.79%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	31.19%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	11.01%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	2.75%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.92%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.92%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	41.28%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	31.19%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	7.34%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	2.75%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.75%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.83%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	1.83%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.83%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.92%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.92%
Filtered Seawater	Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater	0.92%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.92%
Diffuse Hydrothermal Flow Volcanic Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent	0.92%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	0.92%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.92%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000148	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100m	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001683	Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly	Environmental	Open in IMG/M
3300001743	Marine viral communities from the Pacific Ocean - LP-38	Environmental	Open in IMG/M
3300006083	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_Marker33_DNA	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006190	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA	Environmental	Open in IMG/M
3300006304	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m	Environmental	Open in IMG/M
3300006308	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006324	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500m	Environmental	Open in IMG/M
3300006336	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m	Environmental	Open in IMG/M
3300006338	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental	Open in IMG/M
3300008221	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66	Environmental	Open in IMG/M
3300008470	Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009432	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome	Environmental	Open in IMG/M
3300009595	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500	Environmental	Open in IMG/M
3300009622	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300020303	Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124)	Environmental	Open in IMG/M
3300022902 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MG	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300024520 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1	Environmental	Open in IMG/M
3300025039	Marine viral communities from the Pacific Ocean - LP-41 (SPAdes)	Environmental	Open in IMG/M
3300025045	Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)	Environmental	Open in IMG/M
3300025050	Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)	Environmental	Open in IMG/M
3300025052	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)	Environmental	Open in IMG/M
3300025078	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)	Environmental	Open in IMG/M
3300025114	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025237	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300027687	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)	Environmental	Open in IMG/M
3300027714	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)	Environmental	Open in IMG/M
3300027779	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)	Environmental	Open in IMG/M
3300027801	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)	Environmental	Open in IMG/M
3300027813	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)	Environmental	Open in IMG/M
3300027839	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)	Environmental	Open in IMG/M
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental	Open in IMG/M
3300031601	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133	Environmental	Open in IMG/M
3300031627	Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1	Environmental	Open in IMG/M
3300031658	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78	Environmental	Open in IMG/M
3300031659	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82	Environmental	Open in IMG/M
3300031801	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M
3300034629	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SI47jul10_100mDRAFT_10261212	3300000148	Marine	MLIYGKTPKDYLELAKAHKKATAIAVIIVIAVLYCIF*
JGI24006J15134_100330883	3300001450	Marine	MLIYGKTPNDYLELAKAHKKETAIAAIIVIAVLYCIF*
JGI24006J15134_100974052	3300001450	Marine	MLIYGKTPNDYLKVAKAHKKQTAIAAIIVIAVLYCIF*
GBIDBA_101002205	3300001683	Hydrothermal Vent Plume	MLIYGKTPNDYLKLAKAHKKKVAIGLIIVVVVLSWIF*
JGI24515J20084_10053854	3300001743	Marine	IYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSWIF*
Ga0081762_10850972	3300006083	Diffuse Hydrothermal Flow Volcanic Vent	MLIYGKTPNDYLKLAKAHKKKVAVGLIIVIAVLSWIF*
Ga0075441_100738583	3300006164	Marine	MLIYGKTPKDYLELAKAHKKGTAVAAIIVIAILYCIS*
Ga0075441_101048221	3300006164	Marine	GVIMLIYGKTPQDYLELAKAHKKETAIAAIIVIAVLYCIF*
Ga0075446_100929933	3300006190	Marine	MLIYGKTPNDYLKLAKAHKKKVAIGLIIVVAVLSWIF*
Ga0068504_13439181	3300006304	Marine	MLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSFIF*
Ga0068470_11494083	3300006308	Marine	MLIYGKTLNDYLKLAKAHKKKVAVGLIIVVVVLSWIF*
Ga0068470_11494093	3300006308	Marine	MLIYGKTLNDYLKLAKAHKRKVAVGLIIVVAVLYSIF*
Ga0068471_110386813	3300006310	Marine	MLIYGKTLNDYLKLAKAHKRKVAVGLIIVIAVLSWIF*
Ga0068471_12329341	3300006310	Marine	MLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSFI
Ga0068471_14176642	3300006310	Marine	MLIYGKTLNNYLKLAKAHKKKIAVGLIIVVAVLYCIF*
Ga0068471_14279114	3300006310	Marine	MLIYGKTLNDYLKLAKANKKKVAIGLIIVVAVLSWIF*
Ga0068471_15049393	3300006310	Marine	MLIYGKTPNDYLKLAKAHKRKVAVGLIIVVAVLYSIF*
Ga0068471_16458062	3300006310	Marine	MLIYGKTLNDYLKLAKAHKKKVAVGLIIVVAVLSWIF*
Ga0068476_11853672	3300006324	Marine	MLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSCIF*
Ga0068502_13149362	3300006336	Marine	MLIYGKTLNDYLKLAKAHKRKVAVGLIIVVAVLSCIF*
Ga0068502_14241042	3300006336	Marine	MLIYGKTPNEYLKLAKAHKKKVAVGLIIVVVVLSWIF*
Ga0068502_14905733	3300006336	Marine	MLIYGKTPNDYLKLAKAHKKKVAIGLIIVIAVLSWIF*
Ga0068482_12598033	3300006338	Marine	MLIYGKTPNDYLKLAKAHQRKIAVGLIIVVAVLYCIF*
Ga0068503_1024230610	3300006340	Marine	MLIYGKTLNDYLELAKAHKKKVAVGLIVVAVLYCIF*
Ga0068503_102482343	3300006340	Marine	MLIYGKTLNDYLKLVKANKKKVAIGLIIVVAVLSWIF*
Ga0068503_102748132	3300006340	Marine	MLIYGRTLNDYLKLAKAHKKKVAVGLIIVVAVLSFIF*
Ga0068503_102825603	3300006340	Marine	MLIYGKTPNDYLKLAKAHKKKVVVGLIIVVAVLSFIF*
Ga0068503_103210563	3300006340	Marine	MLIYGKTLNDYLKLAKAHKRKVAVGLIIVVAVLSWIF*
Ga0068503_104322262	3300006340	Marine	MLIYGKTPNEYLKLAKAHKKKVAVGLIIVVAVLSWIF*
Ga0068503_104322275	3300006340	Marine	MLIYGKTLNDYLKLAKAHKRKVAIGLIIVVAVLSWIF*
Ga0068503_104445282	3300006340	Marine	MLIYGRTPNDYLKLAKAHKKKVAVGLIIVIAVLSWIF*
Ga0068503_104445292	3300006340	Marine	MLIYGKTLNDYLKLAKAHKKKVVIGLIIVVAVLSWIF*
Ga0068503_104445912	3300006340	Marine	MLIYGKTPNDYLKLAKAHKKKVVIGLIIVVAVLSFIF*
Ga0068503_104809865	3300006340	Marine	MLIYGKTPNDYLKLAKAHKKKVAVGLIKVVAVLSWIF*
Ga0068503_104983221	3300006340	Marine	MLIYGKTPNDYLKLAKAHKKKVAIGLIIVVAVISFIF*
Ga0068503_105531665	3300006340	Marine	MLIYGKTPNDYLKLAKAHQKKVAVGLIIVIAVLYCIF*
Ga0068503_105614052	3300006340	Marine	MLIYGRTPNDYLKLAKAHKKKVAIGLIIVIAVLYCIF*
Ga0068503_105636671	3300006340	Marine	MLIYGKTPNDYLKLAKAHKKKVAIGLIIVVAVLSFIF*
Ga0068503_105886381	3300006340	Marine	YGRTPNDYLKLAKAHKRKVAIGLIIVVVVLYCIF*
Ga0068503_105947593	3300006340	Marine	MLIYGKTPNDYLKLAKAHKRKVAVGLIIVVAVLYWIF*
Ga0068503_107496521	3300006340	Marine	MLIYGKTPNDYLKLAKAHKKKVAVGLKIVVAVLSWIF*
Ga0068503_108181141	3300006340	Marine	MLIYGKTLDDYLKLAKAHKRKVAVGLIIVVAVLYSIF*
Ga0068503_108518242	3300006340	Marine	MLIYGRTPNDYLKLAKAHKKKVAVGLIIVIAVLYCIF*
Ga0098039_11221402	3300006753	Marine	MLIYGKTPNDYLKLAKAHKRKVAVGLIIVVAVLSWIF*
Ga0098044_12089472	3300006754	Marine	MLIYGKTLNDYLKLAKAHKRKVAAGIIIVIVVLYSIF*
Ga0066372_104088851	3300006902	Marine	MLIYGKTLNDYLKLAKAHKRKVAIGLIIVVAVLYSIF*
Ga0075444_101511882	3300006947	Marine	MLIYGKTPNDYLKLAKAHQKKVAIGLIIVIAVLYCIF*
Ga0075444_102025132	3300006947	Marine	MLIYGKTPNDYLELAKAHKKQTAIAVIIVIAVLYCIF*
Ga0075444_102828892	3300006947	Marine	MLIYGKTPNDYLKLAKAHKKEVAIGLIIVVAVLSWIF*
Ga0114916_11224453	3300008221	Deep Ocean	IILRIKIGVIMLIYGKTPNDYLKVAKAHKKETAIAAIIVIAVLYCIF*
Ga0115371_110232591	3300008470	Sediment	ILEIKLALIMLIYGKTTNDYLLLAKSHKTQTAIAVIIVIAVLYCIF*
Ga0114918_101048773	3300009149	Deep Subsurface	MLIYGKTPNDYLKLAKAHKKETAVIAIIVIAVLYCIF*
Ga0114918_101335563	3300009149	Deep Subsurface	MLIYGKTPNDYLELAKAHKKATAIAAIIVIAVLYCIF*
Ga0114996_107874331	3300009173	Marine	MLIYGKTPKDYLNVAKAHKKETAIAAIIVIAVLYCIF*
Ga0114996_112862201	3300009173	Marine	MLLYNTQIKIGVIMLIYGKTPKDYLELAKAHKKGTAVAAIIVIAILYCIS*
Ga0114996_112929592	3300009173	Marine	IYGKTPKDYLELAKAHKKGTAVAAIIVIAILYCIS*
Ga0114993_105262512	3300009409	Marine	MLIYGKELKDYLELAKVHKKETAIAAIIVIAVLYCIF*
Ga0114993_110629502	3300009409	Marine	MLIYGKTPNDYLKVAKAHKKQTAIAAIIEIAILYCIF*
Ga0114993_111216572	3300009409	Marine	MLIYGKTLKDYLKVVKEHKKETAIVAIIVIAILYCIS*
Ga0114994_103860282	3300009420	Marine	MLIYGKKLKDYLELAKVHKKETAIAAIIVIAVLYCIF*
Ga0114994_109884181	3300009420	Marine	MLIYGKTPNDYLKVAKAHKKETAIAAIIVIAILYCIF*
Ga0114997_1000566916	3300009425	Marine	MLIYGKTPNDYVKIAKAHKKETAIAVIIVIAVLYCIF*
Ga0114997_103203091	3300009425	Marine	MLIYGKTPNDYLKVAKAHKKQTAIAVIVVIAVLYCIF*
Ga0114997_104255811	3300009425	Marine	MLIYGKTPNDYLELAKAHKKATAIAAIIVIAVLYC
Ga0115005_116972901	3300009432	Marine	MLIYGKTPNDYLELAKAHKKATVIAAIIVIAILYCIF*
Ga0105214_1037501	3300009595	Marine Oceanic	MLIYGKTPNDYLKLAKAHKKKVAIGLIIVIAVLSFIF*
Ga0105173_10440701	3300009622	Marine Oceanic	MLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSWIF*
Ga0115000_101661081	3300009705	Marine	IYGKTPNDYLELAKAHKKETAIAAIIVIAILYCIF*
Ga0115000_107156673	3300009705	Marine	MLIYGKTLNDYLKLAKAHKKQTAIAVIIVIADLYCIF*
Ga0115002_112273182	3300009706	Marine	MLIYGKTPKDYLELAKAHKKGTAVAVIIVIAILYCIS*
Ga0114999_105963922	3300009786	Marine	MLIYGKTPNDYLKLAKAHQKKVAVGLIIVVAVLSWIF*
Ga0114999_111914362	3300009786	Marine	MLIYGKTPNDYLKVAKAHKKETAIAAIIVIAVLYCIF*
Ga0133547_105509712	3300010883	Marine	MLIYGKTPNDYLELAKAHKKATAVAAIIVIAVLYCIF*
Ga0133547_116796973	3300010883	Marine	MLIYGKTLNDYLKLAKAHKKQTAIAVIIVIAVLYCIF*
Ga0181432_13025682	3300017775	Seawater	MLIYGKTPNDYLKLAKSHKKEVAIGLIVVIAILYCIF
Ga0211692_10192052	3300020303	Marine	MLIYGKTPNDYLKLAKAHKKKVVVGLIIVVAVLSFIF
(restricted) Ga0233429_10445004	3300022902	Seawater	MLIYGKTPKDYLELAKAHKKATAIAVIIVIAVLYCIF
Ga0210003_11105013	3300024262	Deep Subsurface	MLIYGKTPNDYLKLAKAHKKETAVIAIIVIAVLYCIF
(restricted) Ga0255047_101144471	3300024520	Seawater	MLIYGKTPKDYLELAKAHKKATAIAAIAVIIVIAVLYCIF
Ga0207878_1107274	3300025039	Marine	MLIYGKTLNDYLELAKAHKKKVAVGLIVVAVLYCIF
Ga0207878_1141901	3300025039	Marine	MLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSFIF
Ga0207901_10314033	3300025045	Marine	INKIGVIMLIYGRTPNDYLKLAKAHKKKVAVGLIIVIAVLSWIF
Ga0207892_10109171	3300025050	Marine	MLIYGRTPNDYLKLAKAHKKKVAVGLIIVIAVLSWIF
Ga0207892_10277531	3300025050	Marine	IILTTKIGIIMLIYGKTLNDYLELAKAHKKKVAVGLIVVAVLYCIF
Ga0207906_10534552	3300025052	Marine	MLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSWI
Ga0208668_10045834	3300025078	Marine	MLIYGKTLNNYLKLAKAHKKKIAVGLIIVVAVLYCIF
Ga0208433_10176642	3300025114	Marine	MLIYGKTLNDYLKLAKAHKRKVAVGLIIVVAVLSWIF
Ga0209337_10095526	3300025168	Marine	MLIYGKTPNDYLKVAKAHKKQTAIAAIIVIAVLYCIF
Ga0209337_10433842	3300025168	Marine	MLIYGKTPNDYVKIAKAHKKETAIAVIIVIAVLYCIF
Ga0209337_11398142	3300025168	Marine	MLIYGKTPKDYLNVAKAHKKETAIAAIIVIAVLYCIF
Ga0209337_13329031	3300025168	Marine	TILQIKIGVIMLIYGKTPNDYLELAKAHKKQTAIAVIIVIAVLYCIF
Ga0208031_10407192	3300025237	Deep Ocean	MLIYGKTPNDYLELAKAHKKQTAIAVIIVIAVLYCIF
Ga0209425_100439121	3300025897	Pelagic Marine	MLIYGKTPKDYLELAKAHKKATAIAVIIVIAVLYC
Ga0209710_11247196	3300027687	Marine	MLIYGKTPNDYLELAKAHKKATAIAAIIVIAVLYCIF
Ga0209815_12259662	3300027714	Marine	MLIYGKTPKDYLELAKAHKKGTAVAAIIVIAILYCIS
Ga0209709_100282622	3300027779	Marine	MLIYGKTPNDYLELAKAHKKETAIAAIIVIAVLYCIF
Ga0209091_100339487	3300027801	Marine	MLIYGKTPNDYLKVAKAHKKQTAIAVIVVIAVLYCIF
Ga0209090_105077362	3300027813	Marine	MLIYGKTPNDYLELAKAHKKETAIAAIIVIAVLYC
Ga0209403_103948772	3300027839	Marine	MLIYGKTPKDYLELAKAHKKGTAVAAIIVIAILYC
Ga0209403_106411472	3300027839	Marine	IYGKTPKDYLELAKAHKKGTAVAAIIVIAILYCIS
Ga0209501_105238021	3300027844	Marine	LQIKIGVIMLIYGKTPNDYLKVAKAHKKQTAIAAIIVIAVLYCIF
Ga0307992_10654702	3300031601	Marine	MLIYGKTPKDYLELAKAHKKETAIAAIIVIAVLYCIF
Ga0302118_103239151	3300031627	Marine	MLIYGKTPNDYLELVKEHKKATAIAAIIVIAVLYCIF
Ga0307984_10677692	3300031658	Marine	MLIYGKTPRDYLELAKAHKKETAIAAIIVLAVLYCIF
Ga0307986_104517811	3300031659	Marine	GVIMLIYGKTPNDYLELAKAHKKATAIAAIIVIAVLYCIF
Ga0310121_101789775	3300031801	Marine	CINKIGVIMLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSWIF
Ga0310121_103366211	3300031801	Marine	MLIYGKTLNDYLKLVKANKKKVAIGLIIVIAVLSWIF
Ga0315334_116706233	3300032360	Seawater	IMLIYGKTPNDYLKLAKAHKKKVAVGLIIVVAVLSWIF
Ga0326756_027471_268_381	3300034629	Filtered Seawater	MLIYGKTLNDYLKLAKANKKKVAVGLIIVVAVLSWIF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters