Metagenome / Metatranscriptome Family F089362

Basic Information
Family ID	F089362
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	46 residues
Representative Sequence	FGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Number of Associated Samples	103
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Most Common Taxonomy
Group	Bacteria (96.330 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (22.018 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.128 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.33% β-sheet: 0.00% Coil/Unstructured: 78.67%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01906	YbjQ_1	96.33
PF00557	Peptidase_M24	1.83
PF13622	4HBT_3	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	96.33

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.25 %
Unclassified	root	N/A	2.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.33 %
Unclassified	root	N/A	2.75 %
Viruses	superkingdom	All Organisms → Viruses	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.33 %
Unclassified	root	N/A	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.95 %
Unclassified	root	N/A	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.77 %
Unclassified	root	N/A	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21.10 %
Unclassified	root	N/A	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	9.17 %
Unclassified	root	N/A	2.75 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.83 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	8.26 %
Unclassified	root	N/A	2.75 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.83 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	8.26 %
Unclassified	root	N/A	2.75 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.83 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Catenulispora acidiphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	8.26 %
Unclassified	root	N/A	2.75 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.83 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.92 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Catenulispora acidiphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	8.26 %
Unclassified	root	N/A	2.75 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.83 %
Streptomyces sp. DvalAA-14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. DvalAA-14	0.92 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101409095	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300003296\|Ga0006840J48914_120940	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300004620\|Ga0068957_1007770	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1009	Open in IMG/M
3300004629\|Ga0008092_11324596	Not Available	865	Open in IMG/M
3300005338\|Ga0068868_101880743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300005364\|Ga0070673_101773207	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300005444\|Ga0070694_100395609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1081	Open in IMG/M
3300005529\|Ga0070741_11247264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	625	Open in IMG/M
3300005566\|Ga0066693_10145310	All Organisms → cellular organisms → Bacteria → Terrabacteria group	888	Open in IMG/M
3300005574\|Ga0066694_10616466	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005586\|Ga0066691_10215307	All Organisms → Viruses → Predicted Viral	1122	Open in IMG/M
3300006052\|Ga0075029_100261484	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1095	Open in IMG/M
3300006172\|Ga0075018_10718522	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300006579\|Ga0074054_12176915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	912	Open in IMG/M
3300006606\|Ga0074062_12965587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1013	Open in IMG/M
3300006860\|Ga0063829_1484514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2132	Open in IMG/M
3300006904\|Ga0075424_100929909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	927	Open in IMG/M
3300006904\|Ga0075424_102099683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300009090\|Ga0099827_11349480	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300009137\|Ga0066709_104275873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	521	Open in IMG/M
3300009683\|Ga0116224_10104511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	1372	Open in IMG/M
3300010047\|Ga0126382_11254988	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300010358\|Ga0126370_11740684	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300010359\|Ga0126376_12722267	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300010361\|Ga0126378_11698977	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300010861\|Ga0126349_1042656	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300010937\|Ga0137776_1156190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1489	Open in IMG/M
3300011060\|Ga0138583_1110029	All Organisms → cellular organisms → Bacteria → Terrabacteria group	995	Open in IMG/M
3300011067\|Ga0138594_1019216	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1016	Open in IMG/M
3300011073\|Ga0138584_1057802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2011	Open in IMG/M
3300011076\|Ga0138574_1106241	All Organisms → cellular organisms → Bacteria	3148	Open in IMG/M
3300011119\|Ga0105246_10707962	All Organisms → cellular organisms → Bacteria → Terrabacteria group	883	Open in IMG/M
3300011120\|Ga0150983_11438970	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1003	Open in IMG/M
3300011120\|Ga0150983_12007866	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300012285\|Ga0137370_10864885	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012357\|Ga0137384_10098476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2440	Open in IMG/M
3300012357\|Ga0137384_10876981	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300012361\|Ga0137360_11388850	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300012362\|Ga0137361_11709091	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300012489\|Ga0157349_1006260	All Organisms → cellular organisms → Bacteria → Terrabacteria group	857	Open in IMG/M
3300012493\|Ga0157355_1001551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1198	Open in IMG/M
3300012957\|Ga0164303_10170652	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1174	Open in IMG/M
3300013104\|Ga0157370_12119413	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300015373\|Ga0132257_104228053	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300017937\|Ga0187809_10417716	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300017966\|Ga0187776_11240966	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300018029\|Ga0187787_10318250	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300018058\|Ga0187766_11029617	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300018062\|Ga0187784_10648598	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300020004\|Ga0193755_1097180	All Organisms → cellular organisms → Bacteria → Terrabacteria group	934	Open in IMG/M
3300020078\|Ga0206352_10199668	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300020170\|Ga0179594_10359663	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300020582\|Ga0210395_11296071	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300021361\|Ga0213872_10360691	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300021432\|Ga0210384_10466083	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1137	Open in IMG/M
3300021433\|Ga0210391_10612985	Not Available	854	Open in IMG/M
3300021445\|Ga0182009_10681892	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300021478\|Ga0210402_10294569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1501	Open in IMG/M
3300021478\|Ga0210402_10990258	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300021479\|Ga0210410_11269868	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300022525\|Ga0242656_1033789	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300022533\|Ga0242662_10191233	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300022709\|Ga0222756_1056614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. DvalAA-14	598	Open in IMG/M
3300024279\|Ga0247692_1021576	All Organisms → cellular organisms → Bacteria → Terrabacteria group	982	Open in IMG/M
3300024290\|Ga0247667_1025058	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1145	Open in IMG/M
3300024325\|Ga0247678_1049107	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300025527\|Ga0208714_1062080	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300025907\|Ga0207645_10289345	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1089	Open in IMG/M
3300025910\|Ga0207684_10051250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	3502	Open in IMG/M
3300025913\|Ga0207695_11434975	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300027090\|Ga0208604_1000957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2862	Open in IMG/M
3300027307\|Ga0209327_1008146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1268	Open in IMG/M
3300027401\|Ga0208637_1003463	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1363	Open in IMG/M
3300027692\|Ga0209530_1034521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1503	Open in IMG/M
3300027725\|Ga0209178_1233869	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300027826\|Ga0209060_10019101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3645	Open in IMG/M
3300027853\|Ga0209274_10438838	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300027882\|Ga0209590_10364220	All Organisms → cellular organisms → Bacteria → Terrabacteria group	932	Open in IMG/M
3300027911\|Ga0209698_11437420	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300028146\|Ga0247682_1025373	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1045	Open in IMG/M
3300028787\|Ga0307323_10019199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2327	Open in IMG/M
3300028787\|Ga0307323_10127894	All Organisms → cellular organisms → Bacteria → Terrabacteria group	915	Open in IMG/M
3300028789\|Ga0302232_10151410	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1169	Open in IMG/M
3300028801\|Ga0302226_10462735	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300028807\|Ga0307305_10093440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1389	Open in IMG/M
3300028881\|Ga0307277_10526927	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300028906\|Ga0308309_11773317	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300029636\|Ga0222749_10394464	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300029951\|Ga0311371_12385753	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300030007\|Ga0311338_10885129	Not Available	879	Open in IMG/M
3300030503\|Ga0311370_10892547	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1008	Open in IMG/M
3300030529\|Ga0210284_1067268	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300030602\|Ga0210254_10644648	All Organisms → cellular organisms → Bacteria → Terrabacteria group	988	Open in IMG/M
3300030617\|Ga0311356_10691897	All Organisms → cellular organisms → Bacteria → Terrabacteria group	977	Open in IMG/M
3300030904\|Ga0308198_1006338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1312	Open in IMG/M
3300031040\|Ga0265754_1008641	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300031474\|Ga0170818_114818581	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300031572\|Ga0318515_10608761	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300031640\|Ga0318555_10385414	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300031796\|Ga0318576_10431526	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300031799\|Ga0318565_10545568	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300031846\|Ga0318512_10700554	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300031894\|Ga0318522_10047956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1502	Open in IMG/M
3300032008\|Ga0318562_10450589	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300032008\|Ga0318562_10641228	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300032054\|Ga0318570_10017135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2683	Open in IMG/M
3300032805\|Ga0335078_12443173	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300032828\|Ga0335080_11265586	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300032955\|Ga0335076_10252753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	1656	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.83%
Host-Associated	Host-Associated	9.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.24%
Plants	Host-Associated → Plants	9.17%
Aquatic	Environmental → Aquatic	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.34%
Peat	Environmental → Terrestrial → Peat	5.50%
Sediment	Environmental → Aquatic → Sediment	2.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.14%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.34%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.34%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.50%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003296	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004620	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006860	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011060	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011067	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011073	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011076	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012493	Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027307	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030529	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE013SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030602	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1014090952	3300002245	Forest Soil	RFERGEFGVASAEARISMPGTPGHQRYRPGVRGLRDRVARLLDAVSGPTDS*
Ga0006840J48914_1209402	3300003296	Peatlands Soil	FGVASADARIPQPGMTGYQRYRPGMRGLRDRVARLLDAVSGPTGS*
Ga0068957_10077701	3300004620	Peatlands Soil	ERFERGEFGVASADARIPQPGMTGYQRYRPGMRGLRDRVARLLDAVSGPTGS*
Ga0008092_113245961	3300004629	Tropical Rainforest Soil	VASDQARVPQPGTVGYQRYRPGVRGLKDRVARLLDAVTGPTG*
Ga0068868_1018807432	3300005338	Miscanthus Rhizosphere	GEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP*
Ga0070673_1017732072	3300005364	Switchgrass Rhizosphere	GEIGAAERFERGEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0070694_1003956091	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	ERFERGEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP*
Ga0070741_112472641	3300005529	Surface Soil	GAAENPGGGEFGVASAAGRTPPVEIPAYQRYRSGVRGLRDRVARLLDAVSGPNP*
Ga0066693_101453101	3300005566	Soil	PQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPAG*
Ga0066694_106164662	3300005574	Soil	DTRVPQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPNG*
Ga0066691_102153071	3300005586	Soil	RGEFGVVSADRRMAQSGVAEYPRYRPGVRGLRDRVARLLDVVSGPTP*
Ga0075029_1002614842	3300006052	Watersheds	EIGAAERFERGEFGVASADARIPQPGTAGYQRYRPGMRGLRDRVARLLDVVSGPTGS*
Ga0075018_107185222	3300006172	Watersheds	IPIPGTPGYQRYRPGVRGLRDRVARLLDAVSGPTDS*
Ga0074054_121769152	3300006579	Soil	VPQPGTAGYQRYRPGMRGLRDRVARLLDAVSGPTGLGP*
Ga0074062_129655871	3300006606	Soil	AAWIVPQPGTAGYQRYRPGMRGLRDRVARLLDAVSGPTGLGP*
Ga0063829_14845144	3300006860	Peatlands Soil	FERGEFGVASADARIPQPGMTGYQRYRPGMRGLRDRVARLLDAVSGPTGS*
Ga0075424_1009299091	3300006904	Populus Rhizosphere	VASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP*
Ga0075424_1020996831	3300006904	Populus Rhizosphere	FGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP*
Ga0099827_113494802	3300009090	Vadose Zone Soil	AGYQRYRPGVRGLRDRVARLLDVVSGPTGLGPRQP*
Ga0066709_1042758732	3300009137	Grasslands Soil	GAAERFERGERGEFGVASADTRVPQPGMVGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0116224_101045111	3300009683	Peatlands Soil	AERFERGEFGVASADARIPQPGMTGYQRYRPGMRGLRDRVARLLDAVSGPTGS*
Ga0126382_112549882	3300010047	Tropical Forest Soil	RGEFGVASEQPREPQPGMVGYQRYRPGVRGLRDRVARLLDAVSGPTGLGPP*
Ga0126370_117406842	3300010358	Tropical Forest Soil	FERGEFGVAGADARVLQPGMAGYQRYRPGVRGLRDRVARLLDVVSGPTGLGP*
Ga0126376_127222672	3300010359	Tropical Forest Soil	SSVGEIGAAERFERGEFGVASADARAPQPGTAGSQRYRPGVRGLRDRVARLLDAVSGPAG
Ga0126378_116989772	3300010361	Tropical Forest Soil	VASADARVPQPGTAGSQRYRPGVRGLRDRVARLLDAVSGPTG*
Ga0126349_10426562	3300010861	Boreal Forest Soil	GAAERFERGEFGVASADTRVPQPGTAGYQRYRPGMRGLRDRVARLLDAVSGPTGLGP*
Ga0137776_11561903	3300010937	Sediment	EFGVASADARVPQPGMAGYQRHRTGMRGLRDRVARLLDAVSGPTG*
Ga0138583_11100291	3300011060	Peatlands Soil	IPQPGMTGYQRYRPGMRGLRDRVARLLDAVSGPTGS*
Ga0138594_10192161	3300011067	Peatlands Soil	RFERGEFGVASADARIPQPGMTGYQRYRPGMRGLRDRVARLLDAVSGPTGS*
Ga0138584_10578023	3300011073	Peatlands Soil	VGEIGAAERFERGEFGVASADARIPQPGMTGYQRYRPGMRGLRDRVARLLDAVSGPTGS*
Ga0138574_11062411	3300011076	Peatlands Soil	GEFGVASADARIPQPGMTRYQRYRPGMRGLRDRVARLLDAVSGPTGS*
Ga0105246_107079621	3300011119	Miscanthus Rhizosphere	QPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP*
Ga0150983_114389702	3300011120	Forest Soil	DGEFGLASAVGRGPQPGVTGYQRNRRPGVRGLRERVARLLDAVSGPTG*
Ga0150983_120078662	3300011120	Forest Soil	ASADSRVPQPGRGGYQRYRPGMRGLRDRVARLLDAVSGPTGLGP*
Ga0137370_108648852	3300012285	Vadose Zone Soil	ERFERGEFGVASTDTRVPQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPNG*
Ga0137384_100984765	3300012357	Vadose Zone Soil	AAERFERGEFGVASTDTRVPQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPNG*
Ga0137384_108769812	3300012357	Vadose Zone Soil	GVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLDP*
Ga0137360_113888501	3300012361	Vadose Zone Soil	TDTRVPQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPNG*
Ga0137361_117090912	3300012362	Vadose Zone Soil	RVPQPGMVGYPRYRPGVRGLRDRVARLLDVVSGPNG*
Ga0157349_10062601	3300012489	Unplanted Soil	ARVPQPGMPGDQRHRTGVRGLRDRVARLLDAVSGPTGLGP*
Ga0157355_10015511	3300012493	Unplanted Soil	ERFERGEFGVASADTRMPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPIGLGP*
Ga0164303_101706521	3300012957	Soil	VGEIGAAERFERGEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDVVSGPTG*
Ga0157370_121194132	3300013104	Corn Rhizosphere	PQPGMVGHQRYRPGVRGLRDRVARLLDAVSGPTGLGS*
Ga0132257_1042280532	3300015373	Arabidopsis Rhizosphere	VPQPGMPGDQRHRTGVRGLRDRVARLLDAVSGPTGLGP*
Ga0187809_104177161	3300017937	Freshwater Sediment	VGEIGAAERFERGEFGVASADARILQPGMIGYQRYRPGVRGLRDRVARLLDVVSGPTGS
Ga0187776_112409662	3300017966	Tropical Peatland	RFERGEFGVASADARMPQPGMVGQQRYRPGMRGLRDRVARLLDAVSGPTGSGP
Ga0187787_103182502	3300018029	Tropical Peatland	GEFGVASDQARVPQPGLVGYQRYRPGVRGLKDRVARLLDVVSGPTA
Ga0187766_110296171	3300018058	Tropical Peatland	ARGPQPGMPGQQRYRPGVRGLRDRVARLLDAVSGPTG
Ga0187784_106485981	3300018062	Tropical Peatland	GRDAEFGVASADSRARRPGTSGYRRYRPGVRGLKDRVARLLDVVSGPNS
Ga0193755_10971801	3300020004	Soil	GVASADTRVPQPGTAGYQRYRPGMRGLRDRVARLLDAVSGPTGLGP
Ga0206352_101996681	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	RGEFGVASTDARVPQPGMAGYQRYRPGMRGLRDRVARLLDVVSGPAG
Ga0179594_103596631	3300020170	Vadose Zone Soil	VASADTRVPQPGMVGYQRYRPGVRGLRDRVARLLDAVSGPTGLGL
Ga0210395_112960712	3300020582	Soil	RFERGEFGVASAEARISMPGTPGHQRYRPGVRGLRDRVARLLDAVSGPTDS
Ga0213872_103606911	3300021361	Rhizosphere	ASADARAARAGTTGHRRYRPGVRGLRDRLARLLDTVSGPAGQG
Ga0210384_104660831	3300021432	Soil	FGVASADTRVPQPGTVGYQRYRPGVRGLRDRVARLLDVVSGPAG
Ga0210391_106129852	3300021433	Soil	RGEFGVASAARQAATGTPAYQRYRPGVRGLRDRVARLLDVVSGPVP
Ga0182009_106818921	3300021445	Soil	AETRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0210402_102945693	3300021478	Soil	GEFGVASAEARISMPGTPGYQRYRPGVRGLRDRVARLLDAVSGPTDS
Ga0210402_109902582	3300021478	Soil	TRVPQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPNG
Ga0210410_112698682	3300021479	Soil	GEIGAAERFERGEFGVASTDTRVPQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPNG
Ga0242656_10337892	3300022525	Soil	EFGVASADSRVPQPGRVGYQRYRPGMRGLRDRVARLLDAVSGPAA
Ga0242662_101912332	3300022533	Soil	DTRVPQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPNG
Ga0222756_10566142	3300022709	Soil	GVASTDTRVPQPGMVGYQRYRPGMRGLRDRVARLLDVVSGPNG
Ga0247692_10215761	3300024279	Soil	AAERFERGEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDVVSGPTGLGP
Ga0247667_10250581	3300024290	Soil	RGEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0247678_10491072	3300024325	Soil	PQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0208714_10620802	3300025527	Arctic Peat Soil	EFGVASADARTPHPRVAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0207645_102893451	3300025907	Miscanthus Rhizosphere	EIGAAERFERGEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0207684_100512501	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	RYERREFGVASADTRVPQPGTVGYQRYRPGVRGLRDRVARLLDVVSGPTG
Ga0207695_114349751	3300025913	Corn Rhizosphere	TRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0208604_10009575	3300027090	Forest Soil	GGERRGAEEEFGVASPDSRVERPGTPGYQRYRPGVRGLRDRVAHLLDVVSGPNP
Ga0209327_10081463	3300027307	Forest Soil	QPGTPGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0208637_10034633	3300027401	Soil	GAAERFERGEFGVASADTRVPQPGTAGYQRYRPGMRGLRDRVARLLDAVSGPTGLGP
Ga0209530_10345213	3300027692	Forest Soil	DRPEGFGNAEFGVASAYGRTPPPGSQGYQRYRPGVRGLRDRVARLLDTVSGPNP
Ga0209178_12338691	3300027725	Agricultural Soil	VASTDARVPQPGMVGYQRYRPGVRGLRDRVARLLDAVSGPNG
Ga0209060_100191011	3300027826	Surface Soil	DGPRRDQEFGVAAGRVPPPADYQRHRTGVRSLRDRVARLLDAVSGPSA
Ga0209274_104388382	3300027853	Soil	LDRNEEFGVASGDGRVERLGTTGYQRYRPGVRGLRDRVAHLLDVVSGPPS
Ga0209590_103642201	3300027882	Vadose Zone Soil	AGYQRYRPGVRGLRDRVARLLDVVSGPTGLGPRQP
Ga0209698_114374202	3300027911	Watersheds	VPQPGMAGYQRYRPGVRGLRDRVARLLDAVSGPTGLDP
Ga0247682_10253732	3300028146	Soil	VGEIGAAERFERGEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLG
Ga0307323_100191994	3300028787	Soil	GEFGVASADTRVPQPGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0307323_101278942	3300028787	Soil	VASADTRVPQPGMVGHQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0302232_101514101	3300028789	Palsa	SGDSVSRHQGMPGYQRYRPGVRGLRDRVARLLDAVSGPTA
Ga0302226_104627352	3300028801	Palsa	GPQPGVPGYQRYRRPGVRGLRERVARLLDAVSGPTG
Ga0307305_100934401	3300028807	Soil	PGTAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0307277_105269271	3300028881	Soil	FERGEFGVASADTRVPQPGMVGHQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0308309_117733172	3300028906	Soil	LGRDGEFGVASADGRAGRERTQPGTPGYQRYRPGVRGLKDRVAHLLDVVSGPSA
Ga0222749_103944642	3300029636	Soil	FERGEFGVASADSRVPQPGRVGYQRYRPGMRGLRDRVARLLDAVSGPTGLAP
Ga0311371_123857532	3300029951	Palsa	ASGDGVIRHPGMPGYQRYRPGVRGLRDRVARLLDAVSGPTA
Ga0311338_108851292	3300030007	Palsa	DGVIRHPGMPGYQRYRPGVRGLRDRVARLLDAVSGPTA
Ga0311370_108925472	3300030503	Palsa	EFGVASGDGVIRHQGMPGYQRYRPGVRGLRDRVARLLDAVSGPTA
Ga0210284_10672682	3300030529	Soil	FERGEFGVASADARVPQPGRAGYQRYRPGVRGLRDRVARLLDAVSGPTGLDP
Ga0210254_106446481	3300030602	Soil	GEFGLASAVGRGPQPGVTGYQRNRRPGVRGLRERVARLLDAVSGPSG
Ga0311356_106918971	3300030617	Palsa	GVASGDSVSRHQGMPGYQRYRPGVRGLRDRVARLLDAVSGPTA
Ga0308198_10063381	3300030904	Soil	PGMVGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0265754_10086411	3300031040	Soil	RVPQPGMAGYQRYRPGVRGLRDRVARLLDAVSGPTGLGP
Ga0170818_1148185811	3300031474	Forest Soil	ERGDFGVASTDARVPQPGMVGYHRYRPGVRGLRDRVARLLDVVSGPTGLGP
Ga0318515_106087611	3300031572	Soil	TDARVPQPGTAGYPRNRTGVRGLRDRVARLLDAVSGPAG
Ga0318555_103854141	3300031640	Soil	ASTDARMPQPGTAGSPHNRTGVRGLRDRVARLLDAVSGPAG
Ga0318576_104315261	3300031796	Soil	FERGEFGVASADARVPQPGTTGYQRRRTGVRGLRDRVARLLDAVSGPAGLGS
Ga0318565_105455682	3300031799	Soil	ELGEFGVASADARAAQPGTPGHQRYRPGVRGLRDRVARLLDVVSGPTGSLPGPEDLRS
Ga0318512_107005541	3300031846	Soil	ASADARVPQPGAAGYQRYRSGVRGLRDRVARLLDAVSGPAG
Ga0318522_100479561	3300031894	Soil	ASADARVPQPGTAGYQRHRSGMRGLRDRVARLLDAVSGPAGLGS
Ga0318562_104505892	3300032008	Soil	ARVPQPGTTGYQRRRTGVRGLRDRVARLLDAVSGPAGLGS
Ga0318562_106412282	3300032008	Soil	VASADARVPQPGAVGYQRYRSGVRGLRDRVARLLDAVSGPAG
Ga0318570_100171355	3300032054	Soil	FERGEFGVASADARVPQPGAAGSQRYRPGVRGLRDRVARLLDAVSGPTG
Ga0335078_124431732	3300032805	Soil	LGEFGVASPDARAPQTGTPGYQRYRPGVRGLRDRVARLLDAVSGPTGS
Ga0335080_112655862	3300032828	Soil	GEFGVASADTRVPQPGTVGYQRYRTGVRGLRDRVARLLDAVSGPAG
Ga0335076_102527533	3300032955	Soil	ARVPQPGMPGDQRHRTGVRGLRDRVARLLDAVSGPAGLGP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089362

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign