Metagenome / Metatranscriptome Family F089334

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089334
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	70 residues
Representative Sequence	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPERTK
Number of Associated Samples	88
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.32 %
% of genes near scaffold ends (potentially truncated)	22.02 %
% of genes from short scaffolds (< 2000 bps)	83.49 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.734 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (26.606 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.450 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 67.61% β-sheet: 0.00% Coil/Unstructured: 32.39%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13502	AsmA_2	6.42
PF12900	Pyridox_ox_2	2.75
PF00227	Proteasome	1.83
PF09594	GT87	0.92
PF13545	HTH_Crp_2	0.92
PF00294	PfkB	0.92
PF08922	DUF1905	0.92
PF00239	Resolvase	0.92
PF04226	Transgly_assoc	0.92
PF03631	Virul_fac_BrkB	0.92
PF00882	Zn_dep_PLPC	0.92
PF13429	TPR_15	0.92
PF04185	Phosphoesterase	0.92
PF07676	PD40	0.92
PF07228	SpoIIE	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0638	20S proteasome, alpha and beta subunits	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG3484	Predicted proteasome-type protease	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG5405	ATP-dependent protease HslVU (ClpYQ), peptidase subunit	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.92
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.92
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.92
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.92
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.73 %
Unclassified	root	N/A	19.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.73 %
Unclassified	root	N/A	19.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.73 %
Unclassified	root	N/A	19.27 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	70.64 %
Unclassified	root	N/A	19.27 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	63.30 %
Unclassified	root	N/A	19.27 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.30 %
Unclassified	root	N/A	19.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.30 %
Unclassified	root	N/A	19.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.83 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.30 %
Unclassified	root	N/A	19.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.83 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.30 %
Unclassified	root	N/A	19.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.83 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.30 %
Unclassified	root	N/A	19.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.83 %
Deinococcus frigens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus frigens	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908044\|A5_c1_ConsensusfromContig63319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300001545\|JGI12630J15595_10020357	Not Available	1404	Open in IMG/M
3300001661\|JGI12053J15887_10520315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300004156\|Ga0062589_100941989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300004479\|Ga0062595_100731874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300004479\|Ga0062595_102464100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus frigens	518	Open in IMG/M
3300004631\|Ga0058899_12155802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300004643\|Ga0062591_101744992	Not Available	633	Open in IMG/M
3300005293\|Ga0065715_10228102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1244	Open in IMG/M
3300005329\|Ga0070683_101565059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300005335\|Ga0070666_10197238	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1416	Open in IMG/M
3300005344\|Ga0070661_100297232	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1256	Open in IMG/M
3300005468\|Ga0070707_101832643	Not Available	574	Open in IMG/M
3300005546\|Ga0070696_100110179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1982	Open in IMG/M
3300005546\|Ga0070696_100804966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300005577\|Ga0068857_100127651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2292	Open in IMG/M
3300005610\|Ga0070763_10729107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300005615\|Ga0070702_101363080	Not Available	578	Open in IMG/M
3300005719\|Ga0068861_100581180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1025	Open in IMG/M
3300005952\|Ga0080026_10082780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300005994\|Ga0066789_10053186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1771	Open in IMG/M
3300005995\|Ga0066790_10018509	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3051	Open in IMG/M
3300005995\|Ga0066790_10061459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1620	Open in IMG/M
3300006041\|Ga0075023_100163018	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300006050\|Ga0075028_100003463	All Organisms → cellular organisms → Bacteria → Acidobacteria	5922	Open in IMG/M
3300006050\|Ga0075028_100003539	All Organisms → cellular organisms → Bacteria	5869	Open in IMG/M
3300006050\|Ga0075028_100184146	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300006050\|Ga0075028_100413117	Not Available	774	Open in IMG/M
3300006052\|Ga0075029_100679328	Not Available	693	Open in IMG/M
3300006057\|Ga0075026_100507017	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300006057\|Ga0075026_100512981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300006059\|Ga0075017_100028615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3661	Open in IMG/M
3300006173\|Ga0070716_100736199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300006176\|Ga0070765_101681708	Not Available	596	Open in IMG/M
3300006893\|Ga0073928_10261766	Not Available	1317	Open in IMG/M
3300006904\|Ga0075424_100498659	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300009038\|Ga0099829_10003744	All Organisms → cellular organisms → Bacteria → Acidobacteria	8959	Open in IMG/M
3300009088\|Ga0099830_10048164	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2994	Open in IMG/M
3300009148\|Ga0105243_10605721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1055	Open in IMG/M
3300009148\|Ga0105243_13084105	Not Available	505	Open in IMG/M
3300009545\|Ga0105237_12768312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300010371\|Ga0134125_10952126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	942	Open in IMG/M
3300010373\|Ga0134128_10352338	All Organisms → cellular organisms → Bacteria → Acidobacteria	1645	Open in IMG/M
3300010373\|Ga0134128_11741847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300010375\|Ga0105239_13047568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300010375\|Ga0105239_13059184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300010396\|Ga0134126_10470844	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1451	Open in IMG/M
3300011003\|Ga0138514_100098410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300011120\|Ga0150983_15058715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1747	Open in IMG/M
3300011120\|Ga0150983_16673691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300011270\|Ga0137391_10963806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300012189\|Ga0137388_10575925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1047	Open in IMG/M
3300012958\|Ga0164299_11093150	Not Available	595	Open in IMG/M
3300012960\|Ga0164301_10077401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1827	Open in IMG/M
3300012989\|Ga0164305_10702591	Not Available	827	Open in IMG/M
3300013306\|Ga0163162_13472609	Not Available	502	Open in IMG/M
3300013503\|Ga0120127_10036737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	937	Open in IMG/M
3300014325\|Ga0163163_10276632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1730	Open in IMG/M
3300018028\|Ga0184608_10126921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1086	Open in IMG/M
3300019877\|Ga0193722_1050234	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1058	Open in IMG/M
3300019881\|Ga0193707_1009468	All Organisms → cellular organisms → Bacteria	3318	Open in IMG/M
3300019887\|Ga0193729_1061227	All Organisms → cellular organisms → Bacteria → Acidobacteria	1505	Open in IMG/M
3300020579\|Ga0210407_11446875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300020580\|Ga0210403_11484497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300021432\|Ga0210384_10031394	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4961	Open in IMG/M
3300021432\|Ga0210384_10852690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300021479\|Ga0210410_11661309	Not Available	532	Open in IMG/M
3300021559\|Ga0210409_10557357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1012	Open in IMG/M
3300021559\|Ga0210409_11140616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300022557\|Ga0212123_10623351	Not Available	677	Open in IMG/M
3300022880\|Ga0247792_1105807	Not Available	581	Open in IMG/M
3300025899\|Ga0207642_10572776	Not Available	700	Open in IMG/M
3300025912\|Ga0207707_10716201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	839	Open in IMG/M
3300025933\|Ga0207706_10012841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7624	Open in IMG/M
3300025934\|Ga0207686_11084884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300025936\|Ga0207670_11149406	Not Available	656	Open in IMG/M
3300025939\|Ga0207665_10020715	All Organisms → cellular organisms → Bacteria	4323	Open in IMG/M
3300025939\|Ga0207665_10744333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	772	Open in IMG/M
3300026088\|Ga0207641_12581052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300026116\|Ga0207674_10157818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2224	Open in IMG/M
3300026118\|Ga0207675_100378710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1391	Open in IMG/M
3300026142\|Ga0207698_12354231	Not Available	544	Open in IMG/M
3300026294\|Ga0209839_10031519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2006	Open in IMG/M
3300026354\|Ga0257180_1024173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300026446\|Ga0257178_1019723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300027535\|Ga0209734_1065253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300027565\|Ga0209219_1049473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300027587\|Ga0209220_1101072	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300027645\|Ga0209117_1063805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1062	Open in IMG/M
3300027727\|Ga0209328_10130233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	767	Open in IMG/M
3300027846\|Ga0209180_10033254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2786	Open in IMG/M
3300027862\|Ga0209701_10140589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1480	Open in IMG/M
3300027894\|Ga0209068_10001521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11511	Open in IMG/M
3300027894\|Ga0209068_10124886	All Organisms → cellular organisms → Bacteria → Acidobacteria	1376	Open in IMG/M
3300027894\|Ga0209068_10368745	Not Available	815	Open in IMG/M
3300027903\|Ga0209488_11204740	Not Available	510	Open in IMG/M
3300027910\|Ga0209583_10014855	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2370	Open in IMG/M
3300027910\|Ga0209583_10162617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300027911\|Ga0209698_10245198	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300027911\|Ga0209698_10728020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300027915\|Ga0209069_10088591	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1483	Open in IMG/M
3300028047\|Ga0209526_10000121	All Organisms → cellular organisms → Bacteria → Acidobacteria	44313	Open in IMG/M
3300028047\|Ga0209526_10124420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1811	Open in IMG/M
3300028047\|Ga0209526_10884708	Not Available	545	Open in IMG/M
3300031754\|Ga0307475_10426640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1066	Open in IMG/M
3300031962\|Ga0307479_10984179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300032180\|Ga0307471_100024592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4505	Open in IMG/M
3300032180\|Ga0307471_102241181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300033475\|Ga0310811_11223832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.65%
Host-Associated	Host-Associated	18.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.30%
Aquatic	Environmental → Aquatic	18.35%
Plants	Host-Associated → Plants	18.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.39%
Sediment	Environmental → Aquatic → Sediment	16.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.26%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.83%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.86%
Loam	Environmental → Terrestrial → Soil → Loam	22.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	16.51%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	16.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	15.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	3.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.75%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.92%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A5_c1_00464630	2124908044	Soil	MKRIGVLVLIYVVGGISGAVYHSMTTGAVDRARIAALDSTLKERNEKLEKCTTALIEGLHPTVTLPPDKSK
JGI12630J15595_100203571	3300001545	Forest Soil	MKRIGVLVLIFVVGVVSGAVYHSMTTGAADRARIAALDSQLRERNEKLDKCTTALIEGLHSTPQPERTK*
JGI12053J15887_105203152	3300001661	Forest Soil	MKRIGILMLMYVVGGISGVVYHSMTTGAADRARIAVLDDALKERNEKLDKCTTALIEGLHPTVTVPPERSK*
Ga0062589_1009419891	3300004156	Soil	MKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPT
Ga0062595_1007318741	3300004479	Soil	LVLIYVVGGISGAVYHSMTTGALDRARIAALDGTLRERNEKLEKCTTALIEGLHPTVSAPPDKTK*
Ga0062595_1024641001	3300004479	Soil	MKRIGILLLMYAVGGISGVVYHSMTTGAVDRARIASLDGELKARNEKLEKCTTALIEGLHPTVTAPPETTK*
Ga0058899_121558021	3300004631	Forest Soil	VGGISGVVYRSTTTGAVDRARIAALDGALKERNEKLEKCTTALIEGLHPTVTVPPERTK*
Ga0062591_1017449921	3300004643	Soil	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK*
Ga0065715_102281021	3300005293	Miscanthus Rhizosphere	MKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPERTK*
Ga0070683_1015650592	3300005329	Corn Rhizosphere	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVT
Ga0070666_101972382	3300005335	Switchgrass Rhizosphere	MKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK*
Ga0070661_1002972323	3300005344	Corn Rhizosphere	KKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK*
Ga0070707_1018326431	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	KKMGILVLIYVVGGISGAVYHSKTTGAVDRARIVALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK*
Ga0070696_1001101792	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIGILVLIYVVGGISGAVYHSMTTGALDRARIAALDGTLRERNEKLEKCTTALIEGLHPTVSAPPDKTK*
Ga0070696_1008049662	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRVRIAALEGTLTERNEKLEKCTTALIEGLPQGSPKSGQ*
Ga0068857_1001276512	3300005577	Corn Rhizosphere	MKKMGILVLICMVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK*
Ga0070763_107291072	3300005610	Soil	MKKMGILVLIYVAGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTALPDKTK*
Ga0070702_1013630801	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIGILLLMYAVGGISGVVYHSMTTGAVDRARIASLDGELKARNEKLEKCTTALIEGLHPTATAPPERTK*
Ga0068861_1005811801	3300005719	Switchgrass Rhizosphere	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPETTK*
Ga0080026_100827801	3300005952	Permafrost Soil	MMRIGILVLIYIVGGISGAVYHSMTTGAVDRARIAALDGTLKERNEKLEKCTTALIEGLHPTVIPTGNTRKERRGMRGT*
Ga0066789_100531863	3300005994	Soil	MKRIGVLVLIYVVGGISGAVYHSMTTGAVDRARIAALDSTLKERNEKLEKCTTALIEGLHPTVTLPPDKSK*
Ga0066790_100185092	3300005995	Soil	MKRIGILVLMYVVGGVSGVVYHSMTTGAADRARIAVLDGALRERNEKLDKCTTALIEGLHPTVTAPPERSK*
Ga0066790_100614592	3300005995	Soil	MKRIGILVLIYVVGGISGAVYDLMTTGAVDRALIVALDGMLKERNEKLEKCTTALIEGLHPAVTALPDKTK*
Ga0075023_1001630182	3300006041	Watersheds	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGVLKERNEKLEKCTTALIEGLHPTVTVPPDKTKW*
Ga0075028_1000034635	3300006050	Watersheds	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGVLEERNEKLEKCTTALIEGLHPTVTVPPDKTKW*
Ga0075028_1000035397	3300006050	Watersheds	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGALKERNEKLEKCTTALIDGLHPTVTVPPDKTK*
Ga0075028_1001841462	3300006050	Watersheds	MKRIGILVLMYIVGGVSGVVYHSMTSGAADRARIALLDDALKERNEKLEKCTTALIEGLHPTVTAAPERTK*
Ga0075028_1004131171	3300006050	Watersheds	RSQIMKRIGILVLMYIVGGVSGVVYDSMTTGAADRARIAALDGALKERNEKLDKCTSALIEGLHPTVTATPERTK*
Ga0075029_1006793281	3300006052	Watersheds	MKRIGVLVLIYVVGMISGAVYHSATTGAADRARIAALDGALKERNEKLDKCTSALIEGLHPTVTATPERTK*
Ga0075026_1005070172	3300006057	Watersheds	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGVLKERNEKLEKCTTALIEGLHPTVTVPPDKTK*
Ga0075026_1005129812	3300006057	Watersheds	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTALPDKTK*
Ga0075017_1000286155	3300006059	Watersheds	MKKMGILVLIYVVGGISGAVYHSMTTGAVERARIAALDGMLKERNEKLEKCTTALIEGLHPTVTALPDKT
Ga0070716_1007361991	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIGILVLIYVVGGISGAVYHSMATGALDRARIAALDGTLRERNEKLEKCTTALIEVLHPTVSAPPDKTK*
Ga0070765_1016817082	3300006176	Soil	MKKMGILVLIYVAGGISGAVYHSMTTGAVDRARIAALDNTLKERNEKLEKCTTALIDGLHPTATAPPEKTK*
Ga0073928_102617664	3300006893	Iron-Sulfur Acid Spring	MKRIGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGTLKERNEKLEKCTTALIEELHPTVTAQPDKTK*
Ga0075424_1004986592	3300006904	Populus Rhizosphere	MLVGGISGAVYHSMTTGAGDRARTAALDGMLKERNEKLEKCTTALIEGLHPTVTALPDKAK*
Ga0099829_100037447	3300009038	Vadose Zone Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIATLDGALRERNEKLEKCTTALIEGLHPTVAVPPERTK*
Ga0099830_100481642	3300009088	Vadose Zone Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIATLDGALKERNEKLEKCTTALIEGLHPTVTVPPERTK*
Ga0105243_106057211	3300009148	Miscanthus Rhizosphere	MKKMGILVLIYMVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK*
Ga0105243_130841052	3300009148	Miscanthus Rhizosphere	MKRIGILVLIYGVGVISGAVYHSMTTGAVDRVRIAALEGTLTERNEKLEKCTTALIEGLHPTVTAQPDKTK*
Ga0105237_127683121	3300009545	Corn Rhizosphere	MKRIGVLVLIYVVGGISGAVYHSMTTGALDRARIAALDGTLRERNEKLEKCTTALIEGLHPTVSAPPDKTK*
Ga0134125_109521262	3300010371	Terrestrial Soil	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPERTK*
Ga0134128_103523383	3300010373	Terrestrial Soil	MKRIGILLLMYAVGGISGVVYHSMTTGAVDRARIASLDGELKARNEKLEKCTTALIEGLHPT
Ga0134128_117418472	3300010373	Terrestrial Soil	MKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTALPDKTK*
Ga0105239_130475682	3300010375	Corn Rhizosphere	MKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLH
Ga0105239_130591842	3300010375	Corn Rhizosphere	MKKMGILVLICMVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLH
Ga0134126_104708441	3300010396	Terrestrial Soil	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPDKTK*
Ga0138514_1000984101	3300011003	Soil	MKRIGILVLIYLVGVVSGAVYHSMTTGAADRARIATLDGQLRERNEKLDKCTTALIEGLHSPVTR*
Ga0150983_150587153	3300011120	Forest Soil	MKRIGILVLMYIVGGVSGVVYDSMTTGAADRARIALLDGALKERNEKLEKCTTALIEGLHPTVTAAPERTK*
Ga0150983_166736912	3300011120	Forest Soil	MKRIGILVLMYVVGGISGVVYRSTTTGAVDRARIAVLDGALKERNEKLEKCTTALIEGLHPTVTAPPERTK*
Ga0137391_109638062	3300011270	Vadose Zone Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIATLDGALKERNEKLEKCTTALIEGLHPTVAVPPERTK*
Ga0137388_105759251	3300012189	Vadose Zone Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIATLDGALKERNEKLEKCTTALIEGLHPTVAVPSERTK*
Ga0164299_110931501	3300012958	Soil	MKRIGILVLVYVVGGISGVVYHSMTTGAVDRARIASLDGELKARNEKLEKCTTALIEGLHPTVTAPPETTK*
Ga0164301_100774014	3300012960	Soil	MKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAP
Ga0164305_107025911	3300012989	Soil	MKRIGILVLMYVVGGISGVVYHSMTTGAVDRARIASLDGELKARNEKLEKCTTALIEGLHPTVTAPPERTK*
Ga0163162_134726091	3300013306	Switchgrass Rhizosphere	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEG
Ga0120127_100367373	3300013503	Permafrost	MKRIGVLVLIYVLGGISGAVYHSMTTGAVDRARIAALDSTLKERNEKLEKCTTALIEGLHPTVTLPPDKSK*
Ga0163163_102766321	3300014325	Switchgrass Rhizosphere	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPT
Ga0184608_101269212	3300018028	Groundwater Sediment	MKKMGILVLIYLVGGISGAVYHSMTTGAVDRARIAALDSTLKERNEKLEKCTTALIEGLHPTVTALPDKTK
Ga0193722_10502342	3300019877	Soil	MKRIGILVLMYIAGGVSGVVYHSMTTGAADRARIALLDGALKERNEKLEKCTTALIEGLHPTVTAAPERTK
Ga0193707_10094683	3300019881	Soil	MKRIAILVLMYVVGGISGVVYHSMTTGAVDRVRIAALDGALKERNEKLEKCTTALIEGLHPTVTAPPERSK
Ga0193729_10612271	3300019887	Soil	KQQAGVIMKRIGILVLIYLVGVVSGAVYHSMTTGAADRARIATLDGQLRERNEKLDKCTTALIEGLHSPVTR
Ga0210407_114468752	3300020579	Soil	MKRIAILVLMYVVGGISGVVYHSRTTGAVDRARIVALDGALNERNEKLEKCTTALIEGLHPTVTVPPETTK
Ga0210403_114844971	3300020580	Soil	MKRIAILVLMYVVGGISGVVYHSRTTGAVDRARIVALDGALNERNEKLEKCTTALIEGLHPTVTVPPERTK
Ga0210384_100313947	3300021432	Soil	MKRIGILVLMYIVGGVSGVVYHSMTTGAADRARIALLDGALKERNEKLEKCTTALIEGLHPTVTAAPERTK
Ga0210384_108526902	3300021432	Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIAALDGALKERNEKLEKCTTALIEGLHPTVTVPPETTK
Ga0210410_116613091	3300021479	Soil	MKRIGILVLMYIVGGVSGVVYDSMTTGAADRARIALLDGALKERNEKLEKCTTALIEGLHPTVTAAPERTK
Ga0210409_105573571	3300021559	Soil	MKKMGILVLIYVLGGISGAVYHSMTTGAVDRARIAALDGVLKERNEKLEKCTTALIEGLHPTVNALPEKTK
Ga0210409_111406161	3300021559	Soil	MKKMGILVLIYLLGGISGAVYHSMTTGAADRARIAALDGTLKERNEKLEKCTTALIEGLHPTVTALPEKTK
Ga0212123_106233511	3300022557	Iron-Sulfur Acid Spring	MKRIGILALIYVVGGVSGVVYHSMTTGAADRARIAVLDGALKERNEKLEKCTTALIEGLHPTVTAPPERSK
Ga0247792_11058071	3300022880	Soil	MKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK
Ga0207642_105727761	3300025899	Miscanthus Rhizosphere	WCSATGSYVMKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK
Ga0207707_107162012	3300025912	Corn Rhizosphere	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK
Ga0207706_100128416	3300025933	Corn Rhizosphere	MKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPERTK
Ga0207686_110848841	3300025934	Miscanthus Rhizosphere	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPERTK
Ga0207670_111494062	3300025936	Switchgrass Rhizosphere	IMKKMGILVLIYVVGGISGAAYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK
Ga0207665_100207155	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMGILVLIYVVGGISGVVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPETTK
Ga0207665_107443332	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIGILVLIYVVGGISGAVYHSMATGALDRARIAALDGTLRERNEKLEKCTTALIEVLHPTVSAPPDKTK
Ga0207641_125810521	3300026088	Switchgrass Rhizosphere	MKRIGILLLMYAVGGISGVVYHSMTTGAVDRARIASLDGELKARNEKLEKCTTALIEGLHPTV
Ga0207674_101578183	3300026116	Corn Rhizosphere	MKKMGILVLICMVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPERTK
Ga0207675_1003787102	3300026118	Switchgrass Rhizosphere	MKKMGILVLIYMVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPETTK
Ga0207698_123542312	3300026142	Corn Rhizosphere	MKKMGILVLIYMVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTATAPPERTK
Ga0209839_100315193	3300026294	Soil	MKRIGILVLMYVVGGVSGVVYHSMTTGAADRARIAVLDGALRERNEKLDKCTTALIEGLHPTVTAPPERSK
Ga0257180_10241731	3300026354	Soil	MKRIGILVLVYVLGGISGVVYRSTTTGAVDRARIATLDGALKERNEKLEKCTTALIEGLHPTVAVPPERTK
Ga0257178_10197231	3300026446	Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIATLDGALKERNEKLEKCTTALIEGLHPTVTVPP
Ga0209734_10652532	3300027535	Forest Soil	MKKMGILVLIYLLGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTALPEKTK
Ga0209219_10494732	3300027565	Forest Soil	MKRIGILVLIYLVGIVSGAVYHSMTTGAADRARIAALDGQLRERNEKLDKCTTALIEGLHSPATR
Ga0209220_11010721	3300027587	Forest Soil	MKRIGILVLMYVVGGISGVVYHSMTSGAADRARIAALDGTLKERNEKLDKCTTALIEGLHPTVTAPP
Ga0209117_10638051	3300027645	Forest Soil	MKRIGILVIIYIVGGISGAVYHSMTTGAVDRARIAALDGTLKERNEKLEKCTTALIEGLHPTVTAPPERSK
Ga0209328_101302331	3300027727	Forest Soil	MKKIGILVLIYLLGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPEKTK
Ga0209180_100332542	3300027846	Vadose Zone Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIATLDGALRERNEKLEKCTTALIEGLHPTVAVPPERTK
Ga0209701_101405892	3300027862	Vadose Zone Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIATLDGALKERNEKLEKCTTALIEGLHPTVTVPPERTK
Ga0209068_100015216	3300027894	Watersheds	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGALKERNEKLEKCTTALIDGLHPTVTVPPDKTK
Ga0209068_101248861	3300027894	Watersheds	IMKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGVLKERNEKLEKCTTALIEGLHPTVTVPPDKTKW
Ga0209068_103687452	3300027894	Watersheds	MKRIGILVLMYIVGGVSGVVYHSMTSGAADRARIALLDDALKERNEKLEKCTTALIEGLHPTVTAAPERTK
Ga0209488_112047401	3300027903	Vadose Zone Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIATLDGALKERNEKLEKCTTALIEGLHPTVAVPPERTK
Ga0209583_100148552	3300027910	Watersheds	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGVLKERNEKLEKCTTALIEGLHPTVTVPPDKTKW
Ga0209583_101626171	3300027910	Watersheds	MYVVGGISGVVYHSTTTGAVDRARIAALDGALKERNEKLEKCTTALIDGLHPTVTVPPDKTK
Ga0209698_102451982	3300027911	Watersheds	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGVLEERNEKLEKCTTALIEGLHPTVTVPPDKTKW
Ga0209698_107280201	3300027911	Watersheds	MKKMGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTALPDKTK
Ga0209069_100885913	3300027915	Watersheds	MKRIGILVLMYVVGGISGVVYHSTTTGAVDRARIAALDGVLKERNEKLENCTTALIEGLHPTVTVP
Ga0209526_1000012137	3300028047	Forest Soil	MKRIGVLVLIFVVGVVSGAVYHSMTTGAADRARIAALDSQLRERNEKLDKCTTALIEGLHSTPQPERTK
Ga0209526_101244202	3300028047	Forest Soil	MKRIGILVLIYIVGGVSGVVYHSMTTGAADRARIVLLDGALKERNEKLEKCTTALIEGLHPTVTAAPERTK
Ga0209526_108847081	3300028047	Forest Soil	MKRIGILVLIYVVGGISGAVYHSMTTGAVDRARIAALDGVLKERNEKLEKCTTALIEGLHPTATAPPEKTK
Ga0307475_104266402	3300031754	Hardwood Forest Soil	MKRIGILVLVYVVGGISGVVYRSTTTGAVDRARIAALDGALKERNEKLEKCTTALIEGLHPTVTVPPERTK
Ga0307479_109841791	3300031962	Hardwood Forest Soil	MKRIGILVFVYVVGVISGVVYRSTTTGAVDRARIATLDGALKERNEKLEKCTTALIEGLHPTVTVPPERTK
Ga0307471_1000245926	3300032180	Hardwood Forest Soil	MRRIGILVLMYVVGGVSGVAYHSMTTGAADRARIAVLDDALKERNEKLDKCTTALIEGLHPTVTVPPERSK
Ga0307471_1022411812	3300032180	Hardwood Forest Soil	MKRIGILVLIYVVGGISGAVYHSMTTGALDRARIAALDGTLRERNEKLEKCTTALIEGLHPTVSAPPDKTK
Ga0310811_112238322	3300033475	Soil	MKKMGILVLIYMVGGISGAVYHSMTTGAVDRARIAALDGMLKERNEKLEKCTTALIEGLHPTVTAPPERTK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089334

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences