Metagenome / Metatranscriptome Family F089324

Basic Information
Family ID	F089324
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	PASAPRKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD
Number of Associated Samples	102
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	89.91 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Most Common Taxonomy
Group	Bacteria (99.083 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (6.422 % of family members)
Environment Ontology (ENVO)	Unclassified (32.110 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (30.275 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.90% β-sheet: 0.00% Coil/Unstructured: 83.10%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07883	Cupin_2	60.55
PF09084	NMT1	7.34
PF16277	DUF4926	4.59
PF00848	Ring_hydroxyl_A	4.59
PF00355	Rieske	4.59
PF04255	DUF433	2.75
PF00582	Usp	1.83
PF02954	HTH_8	1.83
PF15919	HicB_lk_antitox	1.83
PF08241	Methyltransf_11	0.92
PF04607	RelA_SpoT	0.92
PF03721	UDPG_MGDP_dh_N	0.92
PF00211	Guanylate_cyc	0.92
PF01118	Semialdhyde_dh	0.92
PF12760	Zn_Tnp_IS1595	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	9.17
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	7.34
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	7.34
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	2.75
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.92
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.92
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.92
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.34 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.67 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.67 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.67 %
Caldilineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.67 %
Caldilineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.67 %
Caldilineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.67 %
Caldilinea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.67 %
Caldilinea aerophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila	0.92 %
Unclassified	root	N/A	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2267793	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300000550\|F24TB_14059833	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1043379	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300000787\|JGI11643J11755_11340217	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10113871	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300000953\|JGI11615J12901_10180084	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	875	Open in IMG/M
3300000955\|JGI1027J12803_102059936	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300003324\|soilH2_10011036	All Organisms → cellular organisms → Bacteria	15446	Open in IMG/M
3300003993\|Ga0055468_10302001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300004463\|Ga0063356_101795555	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	921	Open in IMG/M
3300004463\|Ga0063356_102457545	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300004633\|Ga0066395_10860535	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300005169\|Ga0066810_10123246	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005177\|Ga0066690_10447503	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300005289\|Ga0065704_10025015	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300005289\|Ga0065704_10199503	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300005332\|Ga0066388_102841814	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300005336\|Ga0070680_101240412	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300005340\|Ga0070689_100547739	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300005436\|Ga0070713_101391015	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300005614\|Ga0068856_102024226	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005764\|Ga0066903_104757339	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005764\|Ga0066903_107213955	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005829\|Ga0074479_10109207	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300005830\|Ga0074473_11241106	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300006032\|Ga0066696_10559734	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300006049\|Ga0075417_10745898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300006173\|Ga0070716_101064244	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300006845\|Ga0075421_101543293	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300006854\|Ga0075425_101399052	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300006865\|Ga0073934_10081814	All Organisms → cellular organisms → Bacteria	2556	Open in IMG/M
3300006871\|Ga0075434_101860464	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300006881\|Ga0068865_101105241	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300006894\|Ga0079215_10270034	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300009012\|Ga0066710_101494176	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300009081\|Ga0105098_10053337	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300009091\|Ga0102851_12217783	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300009094\|Ga0111539_11817175	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300009137\|Ga0066709_104484723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300009147\|Ga0114129_11690742	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300009156\|Ga0111538_11321628	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300009167\|Ga0113563_10834906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila	1047	Open in IMG/M
3300009551\|Ga0105238_11894617	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300009609\|Ga0105347_1257667	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300009814\|Ga0105082_1046455	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300009837\|Ga0105058_1001347	All Organisms → cellular organisms → Bacteria → Proteobacteria	3924	Open in IMG/M
3300010046\|Ga0126384_11240567	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300010048\|Ga0126373_12737852	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010304\|Ga0134088_10041041	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300010323\|Ga0134086_10037817	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1610	Open in IMG/M
3300010358\|Ga0126370_10161888	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300010359\|Ga0126376_12836642	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300010362\|Ga0126377_11819162	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300010375\|Ga0105239_10233754	All Organisms → cellular organisms → Bacteria	2063	Open in IMG/M
3300011436\|Ga0137458_1282605	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012096\|Ga0137389_10532935	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300012204\|Ga0137374_10940865	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300012231\|Ga0137465_1143123	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300012474\|Ga0157356_1024816	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300012512\|Ga0157327_1025472	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300012685\|Ga0137397_10282105	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300012685\|Ga0137397_10995341	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300012929\|Ga0137404_10571239	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300012929\|Ga0137404_10849433	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300012948\|Ga0126375_10482129	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300012948\|Ga0126375_10910328	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300012989\|Ga0164305_11447664	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300014259\|Ga0075311_1080420	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300014270\|Ga0075325_1078700	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300014296\|Ga0075344_1011220	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300014969\|Ga0157376_12439334	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300016357\|Ga0182032_10675186	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300018000\|Ga0184604_10358081	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300018052\|Ga0184638_1121787	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300018075\|Ga0184632_10028228	All Organisms → cellular organisms → Bacteria	2390	Open in IMG/M
3300018079\|Ga0184627_10036355	All Organisms → cellular organisms → Bacteria → Proteobacteria	2508	Open in IMG/M
3300018079\|Ga0184627_10419012	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300018081\|Ga0184625_10073187	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300018084\|Ga0184629_10105763	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300019879\|Ga0193723_1088539	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300021073\|Ga0210378_10039021	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300021081\|Ga0210379_10021640	All Organisms → cellular organisms → Bacteria	2440	Open in IMG/M
3300022195\|Ga0222625_1273851	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300022563\|Ga0212128_10809372	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300022694\|Ga0222623_10050055	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300025160\|Ga0209109_10147522	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300025310\|Ga0209172_10506300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	554	Open in IMG/M
3300025318\|Ga0209519_10583720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300025319\|Ga0209520_10257586	All Organisms → cellular organisms → Bacteria → Proteobacteria	1082	Open in IMG/M
3300025901\|Ga0207688_10790840	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300025921\|Ga0207652_11082926	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300025922\|Ga0207646_10493915	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300026051\|Ga0208911_1016914	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300026088\|Ga0207641_12305021	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300026095\|Ga0207676_10900599	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300026524\|Ga0209690_1002078	All Organisms → cellular organisms → Bacteria	11466	Open in IMG/M
3300027654\|Ga0209799_1006359	All Organisms → cellular organisms → Bacteria	2464	Open in IMG/M
3300027775\|Ga0209177_10397255	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300028807\|Ga0307305_10084102	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300031573\|Ga0310915_10626408	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300031716\|Ga0310813_10997556	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300031720\|Ga0307469_11290014	Not Available	693	Open in IMG/M
3300031858\|Ga0310892_10412493	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300031911\|Ga0307412_11355204	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300032059\|Ga0318533_11202011	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300032075\|Ga0310890_11784693	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300033434\|Ga0316613_10966626	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300033475\|Ga0310811_10141003	All Organisms → cellular organisms → Bacteria → Proteobacteria	3050	Open in IMG/M
3300034164\|Ga0364940_0217018	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.73%
Host-Associated	Host-Associated	19.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.63%
Aquatic	Environmental → Aquatic	21.10%
Plants	Host-Associated → Plants	19.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.72%
Sediment	Environmental → Aquatic → Sediment	11.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.17%
Freshwater	Environmental → Aquatic → Freshwater	5.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.75%
Marine	Environmental → Aquatic → Marine	0.92%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.93%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.34%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.83%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.83%
Sand	Environmental → Terrestrial → Soil → Sand	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.67%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.75%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.83%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.83%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.92%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012474	Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610	Environmental	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014270	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1	Environmental	Open in IMG/M
3300014296	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026051	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_22677933	3300000033	Soil	RRVDIGRDGPNHKKNLEACKLCKHALSDPDGVLLDLTD*
F24TB_140598331	3300000550	Soil	AAPASAHRKIAIGREGETRQKNLEGCKLCKHALSDPDGVLLDLTD*
AF_2010_repII_A01DRAFT_10433793	3300000580	Forest Soil	ASAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
JGI11643J11755_113402171	3300000787	Soil	IGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
AF_2010_repII_A001DRAFT_101138711	3300000793	Forest Soil	LAATAPASAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
JGI11615J12901_101800843	3300000953	Soil	RVDIGRDGPNHKKNLEACKLCKHALADPDGVLLDLTD*
JGI1027J12803_1020599361	3300000955	Soil	TIGREGEKRQKNLESCKLCRHALADPDGVLLDLTD*
soilH2_100110369	3300003324	Sugarcane Root And Bulk Soil	SSPRKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0055468_103020012	3300003993	Natural And Restored Wetlands	TAAPASAPRKIAIGRDGETRQKNLEGCKLCRQSLSDPDGVLLDLTD*
Ga0063356_1017955553	3300004463	Arabidopsis Thaliana Rhizosphere	GAGHPESAARRVDIGRDGPNHLKNLEACKLCKHALADPDGVLLDLTD*
Ga0063356_1024575451	3300004463	Arabidopsis Thaliana Rhizosphere	AEPKAGARKIAIGRDGEVREKNLQGCKLCKHAISDPDGVLLDLTD*
Ga0066395_108605351	3300004633	Tropical Forest Soil	TLAATTPASAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
Ga0066810_101232462	3300005169	Soil	LDALGAAHPESAARRVDIGRDGPNHMKNLEACKLCKHALSDPDGVLLDLTD*
Ga0066690_104475031	3300005177	Soil	SGARKIATGRDGERRQKNLENCKLCKQSLSDPDGVLLDLTD*
Ga0065704_100250153	3300005289	Switchgrass Rhizosphere	AKKDVENLPNTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0065704_101995031	3300005289	Switchgrass Rhizosphere	AAPASAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0066388_1028418143	3300005332	Tropical Forest Soil	NTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0070680_1012404122	3300005336	Corn Rhizosphere	ALSASNPESKPRKVAIGREGEKHKANLEGCRLCKQSLSDPDGVLLDLTD*
Ga0070689_1005477393	3300005340	Switchgrass Rhizosphere	SPASAPRKIAIGREGEKRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0070713_1013910151	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AAAAPASAPRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0068856_1020242261	3300005614	Corn Rhizosphere	LEALAAAAPASAARKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0066903_1047573393	3300005764	Tropical Forest Soil	RKVGVGREGERHRKNLEGCKLCKQGLSDPDGVLLDLTD*
Ga0066903_1072139551	3300005764	Tropical Forest Soil	IAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD*
Ga0074479_101092073	3300005829	Sediment (Intertidal)	ESAARRVDIGRDGPNHMKNLEDCKLCKHALSDPDGVLLDLTD*
Ga0074473_112411061	3300005830	Sediment (Intertidal)	PASAPRKIAIGREGEVRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0066696_105597341	3300006032	Soil	RKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0075417_107458982	3300006049	Populus Rhizosphere	LETLAAAEPKSGARKIAIGRDGEVRQKNLEGCKLCKHAISDPDGVLLDLTD*
Ga0070716_1010642441	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	EQTKKDLDALAAAAPGSAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0075421_1015432931	3300006845	Populus Rhizosphere	IAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0075425_1013990521	3300006854	Populus Rhizosphere	ATAPDSAPRKIAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD*
Ga0073934_100818144	3300006865	Hot Spring Sediment	GSAHRKIAIGRDGETRQKNLEGCKFCKLALSDPDGVLLDLTD*
Ga0075434_1018604642	3300006871	Populus Rhizosphere	LQQTKKDLDDLAATAPSSAHRKIAIGREGETRQKNLEGCKLCKHALSDPDGILLDLTD*
Ga0068865_1011052413	3300006881	Miscanthus Rhizosphere	IAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0079215_102700343	3300006894	Agricultural Soil	AIGRDGEVREKNLEGCKLCKHSLADPDGVLLDLTD*
Ga0066710_1014941761	3300009012	Grasslands Soil	NLEAAKKDIENLSNSAPGSGARKIAIGREGETRQKNLEACKLCRHALADPDGVLLDLTD
Ga0105098_100533371	3300009081	Freshwater Sediment	KDIENLSSTVPGSAARKIAIGRDGETRQKNLEACRLCRHPLADPDGVLLDLTD*
Ga0102851_122177831	3300009091	Freshwater Wetlands	DLDALRAAHPESAARRVDIGRDGPNHMKNLEACKLCKHALSDPDGVLLDLTD*
Ga0111539_118171753	3300009094	Populus Rhizosphere	PASAPRKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0066709_1044847231	3300009137	Grasslands Soil	LAGSAPTSGARKIAIGRDGERRQKNLEDCKLCKQSLSDPDGVLLDLTD*
Ga0114129_116907422	3300009147	Populus Rhizosphere	ETLAADEPKAGARKIAIGRDGEVREKNLEGCKLCKHAISDPDGVLLDLTD*
Ga0111538_113216283	3300009156	Populus Rhizosphere	RKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0113563_108349061	3300009167	Freshwater Wetlands	AARRVDIGRDGPNHQKNLEGCKLCKHALSDPDGVLLDLTD*
Ga0105238_118946173	3300009551	Corn Rhizosphere	RKIAIGRDGETRQKNLAGCGLCKHPLADPDGVLLDLTD*
Ga0105347_12576671	3300009609	Soil	VGREGERHRKNLESCKLCKQGLSDPDGVLLDLTD*
Ga0105082_10464552	3300009814	Groundwater Sand	SSPASASRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0105058_10013471	3300009837	Groundwater Sand	NLEAAKKDIENLPNTVPGSAARTIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0126384_112405671	3300010046	Tropical Forest Soil	IGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0126373_127378522	3300010048	Tropical Forest Soil	PASAPRKIAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD*
Ga0134088_100410411	3300010304	Grasslands Soil	AATAPASAHRKIAVGREGETRQKNFEGCKLCKHAISDPDGVLLDLTD*
Ga0134086_100378171	3300010323	Grasslands Soil	QTKKDLDVLAGSAPTSGARKIAIGRDGERRQKNLEDCKLCKQSLSDPDGVLLDLTD*
Ga0126370_101618881	3300010358	Tropical Forest Soil	AAKKDVENLPNTAPGSTARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0126376_128366422	3300010359	Tropical Forest Soil	PNTAPGSTARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0126377_118191621	3300010362	Tropical Forest Soil	ARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0105239_102337541	3300010375	Corn Rhizosphere	RKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0137458_12826052	3300011436	Soil	RVDIGRDGPNHRKNLEACKLCKHALSDPDGVLLDLTD*
Ga0137389_105329351	3300012096	Vadose Zone Soil	IENLTHTIPVSAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
Ga0137374_109408652	3300012204	Vadose Zone Soil	PNTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0137465_11431231	3300012231	Soil	SSPASAPRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0157356_10248162	3300012474	Unplanted Soil	PASAPRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0157327_10254721	3300012512	Arabidopsis Rhizosphere	APRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0137397_102821053	3300012685	Vadose Zone Soil	AIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0137397_109953411	3300012685	Vadose Zone Soil	AATPGSAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0137404_105712391	3300012929	Vadose Zone Soil	KDIENLPNTAPGSTSRKISIGRDGETRQKNLEGCKLCRYPLADPDGVLLDLTD*
Ga0137404_108494331	3300012929	Vadose Zone Soil	AKKDIENLPNTAPGSTSRKISIGRDGETRQKNLEGCKLCRYPLADPDGVLLDLTD*
Ga0126375_104821291	3300012948	Tropical Forest Soil	RKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
Ga0126375_109103281	3300012948	Tropical Forest Soil	RKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0164305_114476641	3300012989	Soil	TVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0075311_10804202	3300014259	Natural And Restored Wetlands	VENLSQTAPGSAARKIAIGRDGETRQKNLEACRLCKHPLADPDGVLLDLAD*
Ga0075325_10787003	3300014270	Natural And Restored Wetlands	RRVDVGRDGPKHKENLEGCKLCKQGLADPDGVLLDLTD*
Ga0075344_10112201	3300014296	Natural And Restored Wetlands	LATEFPASAPRNVDVGREGERHRKNLESCKLCKQGLSDPDGVLLDLTD*
Ga0157376_124393341	3300014969	Miscanthus Rhizosphere	PASAPRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0182032_106751861	3300016357	Soil	APRKIAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD
Ga0184604_103580811	3300018000	Groundwater Sediment	APRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD
Ga0184638_11217875	3300018052	Groundwater Sediment	PAAAARKIAIGRDGPQRQKNLEGCKLCKHPLADPDGVLLDLTD
Ga0184632_100282281	3300018075	Groundwater Sediment	QTKKDLEALAASTPASSARKIAIGREGETRQKNLEGCKLCKYPLADPDGVLLDLTD
Ga0184627_100363554	3300018079	Groundwater Sediment	AKKDIENLPNTAPGSSARTIAIGRDGETRQKNLEGCKLCKYSLADPDGVLLDLTD
Ga0184627_104190121	3300018079	Groundwater Sediment	RKIAVGREGEMRQKNFEGCKLCKHAISDPDGVLLDLTD
Ga0184625_100731871	3300018081	Groundwater Sediment	LEALAASTPASSARKIAIGREGETRQKNLEGCKLCKYPLADPDGVLLDLTD
Ga0184629_101057631	3300018084	Groundwater Sediment	KDLEALAATTPASSARKIAIGREGEKRQKNLEGCKLCKYPLADPDGVLLDLTD
Ga0193723_10885391	3300019879	Soil	LAAAAPGSAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD
Ga0210378_100390213	3300021073	Groundwater Sediment	PASAHRKIAVGREGETRQKNFEGCKLCKHAISDPDGVLLDLTD
Ga0210379_100216401	3300021081	Groundwater Sediment	NTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD
Ga0222625_12738513	3300022195	Groundwater Sediment	LDTLAATAPASAHRKIAVGREGETRQKNFEGCKLCKHAISDPDGVLLDLTD
Ga0212128_108093722	3300022563	Thermal Springs	PRKIAIGRDGETRRKNLEGCKLCRQSLSDPDGVLLDLTD
Ga0222623_100500553	3300022694	Groundwater Sediment	ASAHRKIAVGREGETRQKNFEGCKLCKHAISDPDGVLLDLTD
Ga0209109_101475221	3300025160	Soil	GSAARNIAIGRDGETRQKNLQGCKLCKHALADPDGVLLDLTD
Ga0209172_105063001	3300025310	Hot Spring Sediment	RKIAIGRDGETRQKNLEGCKFCKLALSDPDGVLLDLTD
Ga0209519_105837202	3300025318	Soil	PASAPRKIAIGRDGETRQKNLEGCKLCRQSLSDPDGVLLDLTD
Ga0209520_102575862	3300025319	Soil	RNIAIGRDGETRQKNLQGCKLCKHALADPDGVLLDLTD
Ga0207688_107908401	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	AARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD
Ga0207652_110829263	3300025921	Corn Rhizosphere	ESAPRKIAIGRDGETRQQNLEGCKLCKQSLADPDGVLLDLTD
Ga0207646_104939153	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	KDIENLAVNTPASAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD
Ga0208911_10169141	3300026051	Natural And Restored Wetlands	PRRVDVGRDGPKHKENLEGCKLCKQGLADPDGVLLDLTD
Ga0207641_123050211	3300026088	Switchgrass Rhizosphere	APRRVDIGRDGANHLKNLEACKLCKHALSDPDGVLLDLTD
Ga0207676_109005993	3300026095	Switchgrass Rhizosphere	DALGAAHPESAARRVDIGRDGPNHKKNLEACKLCKHALSDPDGVLLDLTD
Ga0209690_100207811	3300026524	Soil	SAPTSGARKIAIGRDGERRQKNLEDCKLCKQSLSDPDGVLLDLTD
Ga0209799_10063594	3300027654	Tropical Forest Soil	VENLPNTVPGSTARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD
Ga0209177_103972552	3300027775	Agricultural Soil	APASAPRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD
Ga0307305_100841023	3300028807	Soil	ALAAAAPGSAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD
Ga0310915_106264081	3300031573	Soil	AARRIAIGRDGEKRQKNLEACKLCRHALADPDGVLLDLTD
Ga0310813_109975563	3300031716	Soil	KIAIGRDGETRQKNLEGCGLCKHPLADPDGVLLDLTD
Ga0307469_112900141	3300031720	Hardwood Forest Soil	RKIDIGREGARRRQNLEACKLGGHATADPDGVLIDLSA
Ga0310892_104124933	3300031858	Soil	LAAAAPASAPRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD
Ga0307412_113552041	3300031911	Rhizosphere	KVAIGRDGEKHKENLEGCKLCKQSLADPDGVLLDLTD
Ga0318533_112020111	3300032059	Soil	IAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD
Ga0310890_117846931	3300032075	Soil	DTLGAAHPESAARRVDIGRDGPNHMKNLEACKLCKHALSDPDGVLLDLTD
Ga0316613_109666261	3300033434	Soil	GAAHPESAARRVDIGRDGPNHLKNLEGCKLCKHALSDPDGVLLDLTD
Ga0310811_101410034	3300033475	Soil	KDLEALATAAPASAARKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD
Ga0364940_0217018_2_127	3300034164	Sediment	SAARKIAIGRDGPQRQKNLEGCKLCKQPLADPDGVLLDLTD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089324

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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