Metagenome Family F089293

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089293
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	81 residues
Representative Sequence	MSKWTKTRRDPGRTYCDPEEAAKLRRDVQRVRELVKKGLDAEPEYVELINKLEPDMTAERRKELIRQFRDAVYEQQPDLPGR
Number of Associated Samples	93
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	41.67 %
% of genes near scaffold ends (potentially truncated)	30.28 %
% of genes from short scaffolds (< 2000 bps)	66.97 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.651 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment (14.679 % of family members)
Environment Ontology (ENVO)	Unclassified (22.936 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.27% β-sheet: 0.00% Coil/Unstructured: 52.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03065	Glyco_hydro_57	9.17
PF01212	Beta_elim_lyase	5.50
PF13632	Glyco_trans_2_3	4.59
PF01475	FUR	3.67
PF00886	Ribosomal_S16	3.67
PF13641	Glyco_tranf_2_3	3.67
PF08240	ADH_N	2.75
PF01850	PIN	2.75
PF02922	CBM_48	2.75
PF01746	tRNA_m1G_MT	1.83
PF00171	Aldedh	1.83
PF02895	H-kinase_dim	0.92
PF13378	MR_MLE_C	0.92
PF13442	Cytochrome_CBB3	0.92
PF13411	MerR_1	0.92
PF02518	HATPase_c	0.92
PF10137	TIR-like	0.92
PF01895	PhoU	0.92
PF01740	STAS	0.92
PF03739	LptF_LptG	0.92
PF01782	RimM	0.92
PF13620	CarboxypepD_reg	0.92
PF01738	DLH	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	11.01
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	5.50
COG4992	Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase	Amino acid transport and metabolism [E]	5.50
COG3033	Tryptophanase	Amino acid transport and metabolism [E]	5.50
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	5.50
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	5.50
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	5.50
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	5.50
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	5.50
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	5.50
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	5.50
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	5.50
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	5.50
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	5.50
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	5.50
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	5.50
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	5.50
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	3.67
COG0228	Ribosomal protein S16	Translation, ribosomal structure and biogenesis [J]	3.67
COG0643	Chemotaxis protein histidine kinase CheA	Signal transduction mechanisms [T]	1.83
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.83
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.83
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.83
COG0795	Lipopolysaccharide export LptBFGC system, permease protein LptF	Cell wall/membrane/envelope biogenesis [M]	0.92
COG0806	Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing	Translation, ribosomal structure and biogenesis [J]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.57 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.57 %
Unclassified	root	N/A	17.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.65 %
Unclassified	root	N/A	17.43 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	47.71 %
Unclassified	root	N/A	17.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	26.61 %
Unclassified	root	N/A	17.43 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.92 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.17 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.92 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Panarthropoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Arthropoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Mandibulata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Pancrustacea	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Crustacea	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Oligostraca	superclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Ostracoda	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Podocopa	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Podocopida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa → Podocopida	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Darwinulocopina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa → Podocopida → Darwinulocopina	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Darwinuloidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa → Podocopida → Darwinulocopina → Darwinuloidea	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Darwinulidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa → Podocopida → Darwinulocopina → Darwinuloidea → Darwinulidae	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Darwinula	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa → Podocopida → Darwinulocopina → Darwinuloidea → Darwinulidae → Darwinula	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.61 %
Unclassified	root	N/A	17.43 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Darwinula stevensoni	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa → Podocopida → Darwinulocopina → Darwinuloidea → Darwinulidae → Darwinula → Darwinula stevensoni	0.92 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001082\|JGI12664J13189_1001477	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2864	Open in IMG/M
3300001356\|JGI12269J14319_10045350	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300001593\|JGI12635J15846_10557753	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300004092\|Ga0062389_100823943	All Organisms → cellular organisms → Bacteria → Acidobacteria	1108	Open in IMG/M
3300004635\|Ga0062388_101613427	Not Available	659	Open in IMG/M
3300005541\|Ga0070733_10267755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1126	Open in IMG/M
3300005602\|Ga0070762_10003089	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7951	Open in IMG/M
3300005712\|Ga0070764_10045842	All Organisms → cellular organisms → Bacteria	2235	Open in IMG/M
3300005712\|Ga0070764_10092377	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300005995\|Ga0066790_10099778	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300006050\|Ga0075028_100030127	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2482	Open in IMG/M
3300006050\|Ga0075028_100405255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	780	Open in IMG/M
3300006052\|Ga0075029_100054234	All Organisms → cellular organisms → Bacteria	2327	Open in IMG/M
3300006059\|Ga0075017_101087886	Not Available	624	Open in IMG/M
3300006102\|Ga0075015_100829823	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300006174\|Ga0075014_100533028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300006176\|Ga0070765_100004281	All Organisms → cellular organisms → Bacteria	9271	Open in IMG/M
3300006354\|Ga0075021_10483609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300007982\|Ga0102924_1341014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300009522\|Ga0116218_1178025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300009698\|Ga0116216_10248425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1087	Open in IMG/M
3300010339\|Ga0074046_10037785	All Organisms → cellular organisms → Bacteria → Acidobacteria	3260	Open in IMG/M
3300010339\|Ga0074046_10695340	Not Available	597	Open in IMG/M
3300010343\|Ga0074044_10342094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300010379\|Ga0136449_100402311	Not Available	2429	Open in IMG/M
3300011120\|Ga0150983_14920415	Not Available	1013	Open in IMG/M
3300012205\|Ga0137362_10126221	All Organisms → cellular organisms → Bacteria	2173	Open in IMG/M
3300012923\|Ga0137359_10178976	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
3300014159\|Ga0181530_10149409	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300014168\|Ga0181534_10943531	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300014489\|Ga0182018_10036009	All Organisms → cellular organisms → Bacteria	3108	Open in IMG/M
3300014491\|Ga0182014_10011139	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8768	Open in IMG/M
3300014495\|Ga0182015_10001734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	28006	Open in IMG/M
3300014495\|Ga0182015_10010480	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8455	Open in IMG/M
3300014657\|Ga0181522_10005982	All Organisms → cellular organisms → Bacteria	6581	Open in IMG/M
3300017822\|Ga0187802_10011344	Not Available	2889	Open in IMG/M
3300017823\|Ga0187818_10062505	All Organisms → cellular organisms → Bacteria → Acidobacteria	1603	Open in IMG/M
3300017823\|Ga0187818_10068512	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300017823\|Ga0187818_10073606	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300017823\|Ga0187818_10189783	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300017933\|Ga0187801_10130339	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	970	Open in IMG/M
3300017934\|Ga0187803_10020377	All Organisms → cellular organisms → Bacteria	2641	Open in IMG/M
3300017934\|Ga0187803_10021623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2565	Open in IMG/M
3300017934\|Ga0187803_10027462	All Organisms → cellular organisms → Bacteria	2265	Open in IMG/M
3300017935\|Ga0187848_10228391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300017943\|Ga0187819_10035985	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa → Podocopida → Darwinulocopina → Darwinuloidea → Darwinulidae → Darwinula → Darwinula stevensoni	2926	Open in IMG/M
3300017943\|Ga0187819_10168290	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300017943\|Ga0187819_10320021	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300017948\|Ga0187847_10005691	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8900	Open in IMG/M
3300017955\|Ga0187817_10678133	Not Available	657	Open in IMG/M
3300017995\|Ga0187816_10193477	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300018006\|Ga0187804_10143735	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300018006\|Ga0187804_10412028	Not Available	599	Open in IMG/M
3300018034\|Ga0187863_10360820	Not Available	809	Open in IMG/M
3300018047\|Ga0187859_10171206	All Organisms → cellular organisms → Bacteria → Acidobacteria	1155	Open in IMG/M
3300018062\|Ga0187784_11133709	Not Available	621	Open in IMG/M
3300018086\|Ga0187769_10157885	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300018088\|Ga0187771_10598663	Not Available	934	Open in IMG/M
3300018090\|Ga0187770_10181025	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300020579\|Ga0210407_10218882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1481	Open in IMG/M
3300020580\|Ga0210403_10164505	All Organisms → cellular organisms → Bacteria → Acidobacteria	1817	Open in IMG/M
3300020581\|Ga0210399_10082891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2607	Open in IMG/M
3300021170\|Ga0210400_10524590	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	977	Open in IMG/M
3300021171\|Ga0210405_10000023	All Organisms → cellular organisms → Bacteria	195142	Open in IMG/M
3300021180\|Ga0210396_11658793	Not Available	521	Open in IMG/M
3300021401\|Ga0210393_10541279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	951	Open in IMG/M
3300021406\|Ga0210386_10509776	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1040	Open in IMG/M
3300021407\|Ga0210383_10011535	All Organisms → cellular organisms → Bacteria → Acidobacteria	7505	Open in IMG/M
3300021432\|Ga0210384_10035017	All Organisms → cellular organisms → Bacteria → Acidobacteria	4658	Open in IMG/M
3300021432\|Ga0210384_10223275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1695	Open in IMG/M
3300021433\|Ga0210391_10441615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300021433\|Ga0210391_10677591	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	808	Open in IMG/M
3300022557\|Ga0212123_10202933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1468	Open in IMG/M
3300022873\|Ga0224550_1018882	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300023101\|Ga0224557_1236163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300025134\|Ga0207416_1224240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300025404\|Ga0208936_1027948	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300027370\|Ga0209010_1000028	All Organisms → cellular organisms → Bacteria → Acidobacteria	80253	Open in IMG/M
3300027562\|Ga0209735_1108830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300027634\|Ga0209905_1075364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300027648\|Ga0209420_1013627	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2784	Open in IMG/M
3300027745\|Ga0209908_10008019	All Organisms → cellular organisms → Bacteria	1688	Open in IMG/M
3300027853\|Ga0209274_10102706	All Organisms → cellular organisms → Bacteria → Acidobacteria	1411	Open in IMG/M
3300027855\|Ga0209693_10209613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	958	Open in IMG/M
3300027894\|Ga0209068_10593719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300027896\|Ga0209777_10350995	Not Available	1124	Open in IMG/M
3300027905\|Ga0209415_10001600	All Organisms → cellular organisms → Bacteria	43237	Open in IMG/M
3300027905\|Ga0209415_10127608	All Organisms → cellular organisms → Bacteria	2655	Open in IMG/M
3300027911\|Ga0209698_10202188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1606	Open in IMG/M
3300028558\|Ga0265326_10070134	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300028560\|Ga0302144_10187342	Not Available	670	Open in IMG/M
3300028746\|Ga0302233_10134815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300028748\|Ga0302156_10473271	Not Available	537	Open in IMG/M
3300029883\|Ga0311327_10011316	All Organisms → cellular organisms → Bacteria	7774	Open in IMG/M
3300029914\|Ga0311359_10145502	All Organisms → cellular organisms → Bacteria → Acidobacteria	2186	Open in IMG/M
3300029917\|Ga0311326_10432592	Not Available	649	Open in IMG/M
3300029999\|Ga0311339_10021956	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9436	Open in IMG/M
3300030506\|Ga0302194_10201366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300030646\|Ga0302316_10323465	Not Available	622	Open in IMG/M
3300031715\|Ga0307476_10406342	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300031718\|Ga0307474_10997644	Not Available	663	Open in IMG/M
3300031754\|Ga0307475_10245502	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300032828\|Ga0335080_10003243	All Organisms → cellular organisms → Bacteria	16423	Open in IMG/M
3300032955\|Ga0335076_10410988	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300033402\|Ga0326728_10006077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	33044	Open in IMG/M
3300033402\|Ga0326728_10069030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4730	Open in IMG/M
3300033982\|Ga0371487_0336430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300034124\|Ga0370483_0021830	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.08%
Host-Associated	Host-Associated	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.30%
Aquatic	Environmental → Aquatic	35.78%
Plants	Host-Associated → Plants	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.46%
Freshwater	Environmental → Aquatic → Freshwater	24.77%
Peat	Environmental → Terrestrial → Peat	12.84%
Sediment	Environmental → Aquatic → Sediment	8.26%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	23.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.60%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.84%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.26%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.75%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	14.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.26%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.42%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.75%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	14.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.42%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.50%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.75%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.75%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.75%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	1.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025404	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027634	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1M	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028558	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG	Host-Associated	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12664J13189_10014772	3300001082	Forest Soil	VSKWTRSRRDPGRTYDDEAVRELRKDVIRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYERQRGQQTGQQRGLPRR*
JGI12269J14319_100453503	3300001356	Peatlands Soil	MSKWKSTRRDPGRTYQDEDEIKQLRRDVARVRELVEIGLEAEPEYVEVINRLEPGMTKERRKELIMQFRDAVYERQQRDLPRR*
JGI12635J15846_105577532	3300001593	Forest Soil	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVQELVKLGLDAEPQYVELINKLDPKMTREKRKELIKQFRDAVYDQQPDL
Ga0062389_1008239432	3300004092	Bog Forest Soil	MSKWTRTRRDPGRTYDDEAERELRKDVKSRLRELVEIGLEAESDYVELINTLEPGMTNERRKELIRQFRDGVYEQQQRGPRRH*
Ga0062388_1016134272	3300004635	Bog Forest Soil	MSKWTRTRRDPERTYCDPEEAKKLRRDVQRVKELVAKGLGAEPEYVEFINQLNPGMGPHERKKLIMQFRDAVYGQQPDLPRR*
Ga0070733_102677553	3300005541	Surface Soil	MSKWTRTRRDPGRNYDDEAVRELRKDVARVRELIEIGLEAESDYVDLINKLQPEMTKARRKELIKQFRDAVYEQQQRGLRRR*
Ga0070762_100030899	3300005602	Soil	MSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELVKQFRDAVYEHQQRGLRHR*
Ga0070764_100458423	3300005712	Soil	VSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYEHQQRDLPRR*
Ga0070764_100923771	3300005712	Soil	MTKWTKSRRDPGRTYCDPDEAARLRHDVQRVRELVEKGLDAEPEYVELINKLDPKMTREKRKELIRQFRDAVYAQQPDLPGR*
Ga0066790_100997782	3300005995	Soil	MTKWTRTRRDPGRAYCDPEEAAKLRRDVQRVQELIKKGLDAEPEYVELINKLDPKMTAERRKELIRQFRDAVYDQQPDLPGR*
Ga0075028_1000301273	3300006050	Watersheds	MTKWTKTRRDPGRTYCDPEEAMKLRHDVQRVRELVRKGLDAEPEYVELINNLEPEMTAERRRELTKQFRDAVYEQQPDLPGR*
Ga0075028_1004052551	3300006050	Watersheds	MTKWTKTRRDPGRTYCDPEEAKKLRRDVQRVRELVKRGLDAEPEYVELINKLEPGMTTERRKALIKQFRDAVYEQQPDLPGR*
Ga0075029_1000542342	3300006052	Watersheds	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVQELVRQGLDAEPEYVELINKLDPKMTSEKRKELIKQFRDAVYDQQPDLPGR*
Ga0075017_1010878862	3300006059	Watersheds	MTKWTKTRCDPGRTYCDPEEVAKLRRDVQRVQELVKQGLDAEPKYVELINKLDPKMKPERRKELIKQFRDAVYDRQPHLPGR*
Ga0075015_1008298232	3300006102	Watersheds	MTKWTKTRRDPGRTYCDPEEAKKLRRDVQRVRELVKQGLDAEPEYVELINKLEPGMTVERRKELIKQFRDAVYEQQPDLPTR*
Ga0075014_1005330281	3300006174	Watersheds	RETTNWKAAQVRAPEQLFDMTKWTRTRRDPGRTYCDPEEAKKLRRDVQRVRELVRQGLDAEPEYVELINKLEPGMTAERRKELIKQFRDAVYDQQPDLPGR*
Ga0070765_1000042816	3300006176	Soil	MSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELIEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYEQQQRDLRRH*
Ga0075021_104836092	3300006354	Watersheds	MTKWTKTRRDPGRTYCDPEEARKLRRDVQRVRELVKQGLDAEPEYVELINKLEPGMTAERRKELIKQFRDAVYEQ
Ga0102924_13410141	3300007982	Iron-Sulfur Acid Spring	EPKRTYAMAKWTRTRRDPGRSYDDEAVRELRKGVIRVRELVEIGLEAESDYVDLINKLEPEMTKERRKELIKQFRDAVYEQQQRDLRRR*
Ga0116218_11780251	3300009522	Peatlands Soil	MSKWKSTRRDPGRTYQDEDEIKQLRRDVARVRELVEIGLEAEPEYVEVINRLEPGMTKERRKELIMQFRDAV
Ga0116216_102484252	3300009698	Peatlands Soil	MSKWKSTRRDPGRTYQDEDEIKQLRRDVARVRELVEIGLEAEPEYVEVINRLEPGMTKERRKELIMQFRDAVYE
Ga0074046_100377854	3300010339	Bog Forest Soil	MNKRTRTRRDPGRTYQDEDEIKQLRRDVARVRELVEIGIEAEPEYVEVINRLEPEMTKARRKELIMQFRAAVYERQQRGLLRH*
Ga0074046_106953401	3300010339	Bog Forest Soil	KTPMTKWTKTRRDPGHTYCDPEEAAKLRRDVQRVQELVKKGLDAEPEYVELINKLEPKMTAERRKELIMQFRDAVYAQQPDLPGH*
Ga0074044_103420941	3300010343	Bog Forest Soil	MSKWTRTRRDPGRTYDDEAERELRKDVKSRLRELVEIGLEAEPAYVDLINTLEPGMTKARRKELIKQFRDAVYEQQRRGPRRR*
Ga0136449_1004023114	3300010379	Peatlands Soil	MSKWTRTRRDPGRTYDDEAERELRKDVKSRLRELIEIGLEAESAYVDLINTLEPEMTKVRRKELIKQFRDAVYEQQQRGLRHR*
Ga0150983_149204151	3300011120	Forest Soil	MSKWTRTRRDPGRNYDDEAVRELRKDVARVRELIEIGLEAEPDYVDLINKLEPEMTKARRKELIKQFRDAVYEHQQRGLRRH*
Ga0137362_101262212	3300012205	Vadose Zone Soil	MSKWMRTRRDRERTYCDPEEARKLRRDVQRVKELVAKGLDAESEYVELINELNPGMSTEQRKKLIKQFRDAVYDQQPDLPGR*
Ga0137359_101789761	3300012923	Vadose Zone Soil	ERTYCDSDEARKLRRDVRRVKELVEKGLDAEPEYVELINELNPGMSTEQRKKLIKQFRDAVYDQQPDLPGR*
Ga0181530_101494092	3300014159	Bog	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVQELVRKGLDAEPEYVELINKLEPDMTAERRKELIKQFRDAVYAQQPDLPGR*
Ga0181534_109435311	3300014168	Bog	MTRWTKPRRDPGRTYCDPEEAARLRRSVQRVRELVEKGLDAEPEYVELINKLDPKMTKERRKELIKQFRDAVYDQRPDLPGR*
Ga0182018_100360092	3300014489	Palsa	MGKWTRTRRDPERTYCDPEEAKKLRRDVQRVKELVAKGLDAEPEYVEFINQLNPRMNPKERKKLIMQFRDAVYDQQPDLPHR*
Ga0182014_100111392	3300014491	Bog	MSKWTRTRRDPGRTYDDEAERELRKDVKSRLGELIEIGLEAESAYVDLINTLEPEMTKARRKELIKQFRDAVYEQQRRGPRPH*
Ga0182015_1000173419	3300014495	Palsa	MSTQIASTVATQRTRRDPGRAYEDKAEQELRKDVKARVRELIEIGLEAEPAYVDLINKLEPGMTKERRKDLIKQFRDAVYENQQRGPQHH*
Ga0182015_100104803	3300014495	Palsa	MSKWTKTRRDPERTYCDPEEGRKLRRDVQRVKELVAKGLDAEPEYVAFINKLEPKMSAEKRKKLIMQFRDAVYAQQPDLPGR*
Ga0181522_100059822	3300014657	Bog	VTKWTKTRRDPGRSYCDPEEARKLRLDVKRVRELVEKGLEAEPEYVETINRLRPGLTTEQRTELIKQFRDAVYARQPDLPGR*
Ga0187802_100113443	3300017822	Freshwater Sediment	MSKWTRTRRDLGRTYDDEAERELRRDVKSRLRELIEIGLEAESNYIDLINTLEPGMTNARRKELIKQFRDAVYEQQQRGLRRR
Ga0187818_100625052	3300017823	Freshwater Sediment	MTKWTKTRRDPGRTYCDPEEAKKLRRDVQRVRELVKQGLDAEPEYVELINKLEPGMSAERRKELIKQFRDAVYEQQPDLPGR
Ga0187818_100685122	3300017823	Freshwater Sediment	MTKWTKTRRDPGRTYCDPDEAAKLRRDMQRVRELVELGLDAEPEYVELINKLEPGMTVERRKELIMRFRDAVYEQQRDLRDR
Ga0187818_100736062	3300017823	Freshwater Sediment	MTKWTKTRRDPERTYCDPEEAKKLRRDVQRVKELVAKGLDAEPEYVELINELHPGMSTEQRKKLIKQFRDAVYDQQPDLPGR
Ga0187818_101897832	3300017823	Freshwater Sediment	MTKWKTRRDPGRTYCDPEEAAKLRRDVQRVRELVEKGFDAGPEYVELINKLEPEMTAARRKELIRRFRDAVYERQPDLPGR
Ga0187801_101303392	3300017933	Freshwater Sediment	MSKWAKTRRDPGRTYCDPEEVKNLRRDVQRVRELVKQGLDAEPEYVELINKLEPRMTVERRKELIKQFRDAVYEQQPDLPGR
Ga0187803_100203774	3300017934	Freshwater Sediment	LHMSKWTQTRRDPGRTYCDPEEAAKLRRDVQRVRELVKQGLDAEPEYVELINKLEPDMTAERRKELIRQFRDAVYAEQPDLPGR
Ga0187803_100216232	3300017934	Freshwater Sediment	MSKWTRTRRDPGRTYQDEDEVKQLRRDVARVRELVEIGLEAEPEYVEVINRLEPGMTKERRKELIMQFRDAVYERQQRDLLRR
Ga0187803_100274625	3300017934	Freshwater Sediment	MSKWAKTRRDPGRTYCDPEEAKKLRRDVQRVRELVKQGLDAEPEYVELINKLEPRMTVERRKELIKQFRDAVYEQQPDLPGR
Ga0187848_102283912	3300017935	Peatland	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVQELVKRGLDAEPEYVELINKLDPKMTAERRRELIRQFRDAVYEQQPDLPGR
Ga0187819_100359854	3300017943	Freshwater Sediment	MTKWKTRRDPGRTYCDPGEAAKLRRDVQRVRELVEKGFDAESEYVELINKLEPEMTAARRKELIRRFRDAVYERQPDLPGR
Ga0187819_101682902	3300017943	Freshwater Sediment	MTRWKTRRDPGRTYCDPEEAAKLRRDVQRVRELVEKGFDAGPEYVELINKLEPEMTAARRKELIRQFRDERQPDLPGR
Ga0187819_103200211	3300017943	Freshwater Sediment	KWTKTRRDPERTYCDPEEAKKLRRDVQRVKELVAKGLDAEPEYVELINELHPGMSTEQRKKLIKQFRDAVYDQQPDLPGR
Ga0187847_100056913	3300017948	Peatland	MTRWTKPRRDPGRTYCDPEEAARLRRSVQRVRELVEKGLDAEPEYVELINKLDPKMTKERRKELIKQFRDAVYDQRPDLPGR
Ga0187817_106781331	3300017955	Freshwater Sediment	TKSRRDPGRTYCDPEEAAKLRRDIQRVQELVRKGLDAEPEYVELINKLDPKMTTERRKELIKQFRDAVYAQQPDLPGR
Ga0187816_101934772	3300017995	Freshwater Sediment	MTKWKTRRDPGRTYCDAEEAAKLRRDVQRVRELVEKGFDAESEYVELINKLEPEMTAARRKELIRRFRDAVYERQPDLPGR
Ga0187804_101437352	3300018006	Freshwater Sediment	MTKWKTRRDPGRTYCDPEEAAKLRRDVQRVRELVEKGFDAEPEYVELINKLEPEMTAARRKELIRQFRDAVY
Ga0187804_104120281	3300018006	Freshwater Sediment	MSKWTKTRRDPERTYCDPEEAKKLRRDVQRVKELVAKGLDAEPEYVELINELHPGMSTEQRKKLIKQFRDAVYDQQP
Ga0187863_103608202	3300018034	Peatland	TRRDPGRIYDNEAVRELRKDVSRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYERQGDQQRGPQTGQQRGLPRR
Ga0187859_101712062	3300018047	Peatland	MTKWTRTRRDPGRIYDNEAVRELRKDVSRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYERQGDQQRGPQTGQQRGLPRR
Ga0187784_111337091	3300018062	Tropical Peatland	MTKWKTRCDPGRTYCDPEEAAKLRRDVQRVRELVEKGFDAEPEYVELINKLEPEMTAARRKELIRQSRDAVYERQPDLPGR
Ga0187769_101578852	3300018086	Tropical Peatland	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVRELVEKGLDAEPEYVELINKLAPEMTAARRKELIRQFRDAVYERQPDLPGR
Ga0187771_105986633	3300018088	Tropical Peatland	MTKWKTRRDPGRTYCDPEEAAKLRRDVQRVRELVEKGFDAEPEYVELINKLEPEMTAARRKELIRQFRDAVYERQPDLPGR
Ga0187770_101810252	3300018090	Tropical Peatland	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVRELVEKGFDAEPEYVELINKLEPEMTAARRKELIRQFRDAVYERQPDLPGR
Ga0210407_102188823	3300020579	Soil	MSKWTKTRRDPGRTYDDEAVRELRKDVTRVRELIEIGLEAESDYVDLINKLEPEMTKARRKELIRHFRDAVYEQQQRGLRRH
Ga0210403_101645054	3300020580	Soil	MSKWTRTRRDPGRNYDDEAVRELRKDVARVRELIEIGLEAEPDYVDLINKLEPEMTKARRKELIKQFRDAVYEQQQRGLRRH
Ga0210399_100828911	3300020581	Soil	MSKWTRTRRDPGRNYDDEAVRELRKDVARVRELIEIGLEAESDYVDLINKLQPEMTKARRKELIKQFRDAVYEQQQRGLRRH
Ga0210400_105245903	3300021170	Soil	NYDDEAVRKLRKSATRARELVEIGLEAESDYVDLINKLEPGMTKDRRKELVKQFRDAVYEHQQRGLRHR
Ga0210405_1000002366	3300021171	Soil	MSKWTRTRRDPERTYCDPEETRKLRRDVQRVKELVAKGLEAEPEYVKLINELNPGMSPEQRKKLIRQFRDAVYAQQPDLPGR
Ga0210396_116587931	3300021180	Soil	PGRTYDDEAVRELRKSATRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELVKQFRDAVYEHQQRGLRRR
Ga0210393_105412792	3300021401	Soil	MSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELVKQFRDAVYEHQQRGLRHR
Ga0210386_105097763	3300021406	Soil	WTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELVKQFRDAVYEHQQRGLRRR
Ga0210383_1001153511	3300021407	Soil	MSKWTRTRRDPGRNYDDEAVRELRKDVARVRELIEIGLEAESDYVDLINKLQPEMTKARRKELIKQFRDAVYEQQQRGLRRR
Ga0210384_100350176	3300021432	Soil	MSKWTRTRRDPGRNYDDEAVRELRKDVARVRELIEIGLEAEPDYVDLINKLEPEMTKARRKELIKQFRDAVYEHQQRGLRRH
Ga0210384_102232753	3300021432	Soil	MSKWTRTRRDPERTYCDPEEAKKLRHDVQRVRELLAKGLEAEPEYVEFINTLDPDMTPEKRKKLIMQFRDAVSGQQPDLPGR
Ga0210391_104416152	3300021433	Soil	VSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAETDYVDLINKLEPGMTKDRRKELIKQFRDAVYEHQQHGLRRR
Ga0210391_106775912	3300021433	Soil	MSKWTRTRRDPGRNYDDEAVRELRKDVARVRELIEIGLEAESDYVDLINKLQPEMTKARRKELIKQFRDAVYEQQQRGL
Ga0212123_102029334	3300022557	Iron-Sulfur Acid Spring	MAKWTRTRRDPGRSYDDEAVRELRKGVIRVRELVEIGLEAESDYVDLINKLEPEMTKERRKELIKQFRDAVYEQQQRDLRRR
Ga0224550_10188823	3300022873	Soil	YCDPEEAKKLRRDVQRVKELVAKGLDAEPEYVEFINQLNPRMNPKERKKLIMQFRDAVYDQQPDLPHR
Ga0224557_12361631	3300023101	Soil	MSKWTRTRRDPGRTYDDEAERELRKDVKSRLGELIEIGLEAESAYVDLINTLEPEMTKARRKELIKQFRD
Ga0207416_12242401	3300025134	Iron-Sulfur Acid Spring	RTYAMAKWTRTRRDPGRSYDDEAVRELRKGVIRVRELVEIGLEAESDYVDLINKLEPEMTKERRKELIKQFRDAVYEQQQRDLRRR
Ga0208936_10279482	3300025404	Peatland	IPMTRWTKPRRDPGRTYCDPEEAARLRRSVQRVRELVEKGLDAEPEYVELINKLDPKMTKERRKELIKQFRDAVYDQRPDLPGR
Ga0209010_100002849	3300027370	Forest Soil	VSKWTRSRRDPGRTYDDEAVRELRKDVIRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYERQRGQQTGQQRGLPRR
Ga0209735_11088301	3300027562	Forest Soil	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVQELVKLGLDAEPQYVELINKLDPKMTREKRKELIKQF
Ga0209905_10753641	3300027634	Thawing Permafrost	MSKWTRTRRDPGRTYDDEAERELRKDVKSRLGELIEIGLEAESAYVDLINTLEPEMTKARRKELIKQFRDAVYAVSYTHLVRLHSAHSR
Ga0209420_10136274	3300027648	Forest Soil	VSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAETDYVDLINKLEPGMTKDRRKELIKQFRDAVYEHQQHGLPRR
Ga0209333_11974001	3300027676	Forest Soil	KDVIRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYERQRGQQTGQQRGLPRR
Ga0209908_100080192	3300027745	Thawing Permafrost	MGKWTRTRRDPERTYCDPEEAKKLRRDVQRVKELVAKGLDAEPEYVEFINQLNPRMNPKERKKLIMQFRDAVYDQQPDLPHR
Ga0209274_101027062	3300027853	Soil	VSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELIKQFRDAVYEHQQRDLPRR
Ga0209693_102096133	3300027855	Soil	VSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAETDYVDLINKLEPGMTKDRRKELVKQFRDAVYEHQQHGLRRR
Ga0209068_105937191	3300027894	Watersheds	MTKWTKTRRDPGRTYCDPEEAKKLRRDVQRVRELVKRGLDAEPEYVELINKLEPGMTTERRKALIKQFRDAVYEQQPDLPGR
Ga0209777_103509951	3300027896	Freshwater Lake Sediment	MTKWTKTRRDPGRTYCDQEEAAKLRRDVQRVQELVMKGLDAEPEFVELINKLDPDLTAERRKELIKQFRDAVYAQQPDLPGR
Ga0209415_1000160019	3300027905	Peatlands Soil	MSKWKSTRRDPGRTYQDEDEIKQLRRDVARVRELVEIGLEAEPEYVEVINRLEPGMTKERRKELIMQFRDAVYERQQRDLPRR
Ga0209415_101276082	3300027905	Peatlands Soil	MSKWTKTRRDPGRTYCDPEEAAKLRRDVQRVRELVKKGLDAEPEYVELINKLEPDMTAERRKELIRQFRDAVYEQQPDLPGR
Ga0209698_102021883	3300027911	Watersheds	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVQELVRQGLDAEPEYVELINKLDPKMTSEKRKELIKQFRDAVYDQQPDLPGR
Ga0265326_100701342	3300028558	Rhizosphere	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVQELVKQGLDAEPEYVELINRLDPKMTVERRKELIMQFRDAVYAQQPDLPGR
Ga0302144_101873422	3300028560	Bog	VTKWTKTRRDPDRTYCDREEARKLRLDVKRVRELVEKGLEAEPEYVEMINRLRPGLTTEQRKELIKQFRDAVYARQPDLPGR
Ga0302233_101348151	3300028746	Palsa	MSKWTRTRRDPDRTYCDPEEGRKLRRDVQRVKELVAKGLDAEDEYVELINELEPGMSPEKRKALIMQFRDAVYAQQPDLPRR
Ga0302156_104732711	3300028748	Bog	VTKWTKTRRDPDRTYCDREEARKLRLDVKRVRELVEKGLEAEPEYVEMINRLRPGLTTEQRKELIKQFRDAVYAR
Ga0311327_100113164	3300029883	Bog	MSKRTRTRRDPERTYCDPDEAEKLRRDVKRVKELVAKGLDAKPEYVELINRLNPGMSTERRKTLIKQFRDAVSAQQPDLPGR
Ga0311359_101455022	3300029914	Bog	SQRPMSKRTRTRRDPERTYCDPDEAEKLRRDVKRVKELVAKGLDAKPEYVELINRLNPGMSTERRKTLIKQFRDAVSAQQPDLPGR
Ga0311326_104325921	3300029917	Bog	GSAASQRPMSKRTRTRRDPERTYCDPDEAEKLRRDVKRVKELVAKGLDAKPEYVELINRLNPGMSTERRKTLIKQFRDAVSAQQPDLPGR
Ga0311339_100219564	3300029999	Palsa	MGKWTRTRRDPERTYCDPEEAKKLRRDVQRVKELVAKGLDAEPEYVEFINQLNPRMDPKERKKLIMQFRDAVYDQQPDLPHR
Ga0302194_102013661	3300030506	Bog	MSKRTRTRRDPERTYCDPDEAEKLRRDVKRVKELVAKGLDAKPEYVELINRLNPGMSTERRKTLIKQFRDAVS
Ga0302316_103234651	3300030646	Palsa	PLNCSSAQSMSKWTRTRRDPDRTYCDPEEGRKLRRDVQRVKELVAKGLDAEDEYVELINELEPGMSPEKRKALIMQFRDAVYAQQPDLPRR
Ga0307476_104063421	3300031715	Hardwood Forest Soil	AILLRKVSSQWPQCHAMSKWTRTRRDPGRTYDDEAVRELRKDVTRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELVKRFRDAVYEHQQRGLRRR
Ga0307474_109976441	3300031718	Hardwood Forest Soil	PGRTYDDEAVRELQKDVTRVRELVEIGLEAESDYVDLINKLEPGMTKDRRKELVKQFRDAVYEHQQRGLRRR
Ga0307475_102455021	3300031754	Hardwood Forest Soil	YCDPEEAKKLRRDVKRVQELVAKGLDAESEYVEFINKLRPEMSPEERKKLIRQFRDAVYDQQPDLPSR
Ga0335080_100032437	3300032828	Soil	MGKRIKTRRDPGRTYQDEDEIRQLRRDVARVRELIDIGLEAEGDYVEIINRLEPEITKERRKELIKQFRDAVYERQQRGLPHR
Ga0335076_104109883	3300032955	Soil	MTKWTKSRRDPGQTYCDPEEAAKLRRDVQRVKELVEKGLDAEPEYVELINKLDPKMTVEKRKELIKQFRDAVYAQQPDLPGR
Ga0326728_1000607721	3300033402	Peat Soil	MTKWTRTRRDPGRTYCDPEEAAKLRRDVQRVQELVKLGLDVEPEYVEIINRLDPDMTVERRKELIKQFRDAVYARQPDLPGR
Ga0326728_100690303	3300033402	Peat Soil	MTKWTKTRRDPGRTYCDPEEAAKLRRDVQRVQELVKKGFDAEPEYVELINKLEPDMTAARRKELIMQFRDAVYEQQPDLPGR
Ga0371487_0336430_3_209	3300033982	Peat Soil	MTKWTRTRRDPGRTYCDPEEAAKLRRDVQRVQELVKLGLDVEPEYVEIINRLDPDMTVERRKELIKQFR
Ga0370483_0021830_292_531	3300034124	Untreated Peat Soil	VDETRRDPGRTYCDPDEAAKLRRDVQRVQELVKKGLDAEPEYVELINKLDPKMTAERRKELIRQFRDAVYDQQPDLLGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089293

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences