Metagenome / Metatranscriptome Family F089287

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089287
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	78 residues
Representative Sequence	MSLLSVAIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKD
Number of Associated Samples	73
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	38.53 %
% of genes near scaffold ends (potentially truncated)	26.61 %
% of genes from short scaffolds (< 2000 bps)	76.15 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.633 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.018 % of family members)
Environment Ontology (ENVO)	Unclassified (47.706 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (78.899 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.38% β-sheet: 0.00% Coil/Unstructured: 39.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02653	BPD_transp_2	5.50
PF06826	Asp-Al_Ex	5.50
PF01471	PG_binding_1	2.75
PF03364	Polyketide_cyc	1.83
PF12161	HsdM_N	1.83
PF13245	AAA_19	1.83
PF07963	N_methyl	1.83
PF05685	Uma2	0.92
PF08501	Shikimate_dh_N	0.92
PF13340	DUF4096	0.92
PF01548	DEDD_Tnp_IS110	0.92
PF07589	PEP-CTERM	0.92
PF12951	PATR	0.92
PF09848	DUF2075	0.92
PF01381	HTH_3	0.92
PF16499	Melibiase_2	0.92
PF01850	PIN	0.92
PF06742	DUF1214	0.92
PF13195	DUF4011	0.92
PF02384	N6_Mtase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2985	Uncharacterized membrane protein YbjL, putative transporter	General function prediction only [R]	5.50
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	0.92
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.92
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.92
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.92
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
All Organisms	root	All Organisms	40.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
cellular organisms	root	All Organisms → cellular organisms	40.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.50 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.50 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.34 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.59 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.34 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.75 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.34 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.34 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.83 %
Marinilabiliales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales	0.92 %
Kozakia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Kozakia	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.34 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.83 %
Marinilabiliaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae	0.92 %
Kozakia baliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Kozakia → Kozakia baliensis	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.34 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.83 %
Labilibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Labilibacter	0.92 %
Kozakia baliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Kozakia → Kozakia baliensis	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.34 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.83 %
Labilibacter sediminis	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Labilibacter → Labilibacter sediminis	0.92 %
Kozakia baliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Kozakia → Kozakia baliensis	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101798455	Not Available	1011	Open in IMG/M
3300000789\|JGI1027J11758_12340169	Not Available	536	Open in IMG/M
3300002245\|JGIcombinedJ26739_100153084	Not Available	2179	Open in IMG/M
3300002245\|JGIcombinedJ26739_100671068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300003219\|JGI26341J46601_10001703	All Organisms → cellular organisms → Bacteria	7176	Open in IMG/M
3300003219\|JGI26341J46601_10030389	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300003368\|JGI26340J50214_10001868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6922	Open in IMG/M
3300003368\|JGI26340J50214_10035219	Not Available	1460	Open in IMG/M
3300003368\|JGI26340J50214_10171835	Not Available	539	Open in IMG/M
3300004080\|Ga0062385_10906597	Not Available	585	Open in IMG/M
3300004152\|Ga0062386_100499138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	988	Open in IMG/M
3300004152\|Ga0062386_100588247	Not Available	909	Open in IMG/M
3300004152\|Ga0062386_100960961	Not Available	707	Open in IMG/M
3300004631\|Ga0058899_12093740	Not Available	953	Open in IMG/M
3300005610\|Ga0070763_10173845	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300005764\|Ga0066903_108971820	Not Available	506	Open in IMG/M
3300005921\|Ga0070766_10809273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	639	Open in IMG/M
3300005994\|Ga0066789_10063233	Not Available	1609	Open in IMG/M
3300006174\|Ga0075014_100937445	Not Available	521	Open in IMG/M
3300006176\|Ga0070765_100215216	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1750	Open in IMG/M
3300006176\|Ga0070765_101989088	Not Available	544	Open in IMG/M
3300006893\|Ga0073928_10038631	All Organisms → cellular organisms → Bacteria	4457	Open in IMG/M
3300006893\|Ga0073928_10186976	Not Available	1634	Open in IMG/M
3300006893\|Ga0073928_10283990	Not Available	1250	Open in IMG/M
3300006893\|Ga0073928_11217165	Not Available	507	Open in IMG/M
3300009824\|Ga0116219_10220972	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300010046\|Ga0126384_11752865	Not Available	588	Open in IMG/M
3300010048\|Ga0126373_10303623	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300010343\|Ga0074044_10019510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	4929	Open in IMG/M
3300010343\|Ga0074044_10036472	All Organisms → cellular organisms → Bacteria	3431	Open in IMG/M
3300010379\|Ga0136449_100372840	Not Available	2550	Open in IMG/M
3300010379\|Ga0136449_101297287	Not Available	1135	Open in IMG/M
3300010857\|Ga0126354_1030458	Not Available	604	Open in IMG/M
3300011120\|Ga0150983_12148759	Not Available	1020	Open in IMG/M
3300011120\|Ga0150983_12267650	Not Available	1105	Open in IMG/M
3300012177\|Ga0153943_1085036	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300012205\|Ga0137362_11261606	Not Available	624	Open in IMG/M
3300012951\|Ga0164300_10774458	Not Available	591	Open in IMG/M
3300012955\|Ga0164298_10469024	Not Available	833	Open in IMG/M
3300012961\|Ga0164302_10314317	Not Available	1030	Open in IMG/M
3300012987\|Ga0164307_10043329	Not Available	2535	Open in IMG/M
3300016357\|Ga0182032_11447523	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300020579\|Ga0210407_10058304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2889	Open in IMG/M
3300020579\|Ga0210407_10084678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Kozakia → Kozakia baliensis	2393	Open in IMG/M
3300020580\|Ga0210403_10522161	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300020580\|Ga0210403_10649369	Not Available	849	Open in IMG/M
3300020581\|Ga0210399_11532668	Not Available	516	Open in IMG/M
3300020582\|Ga0210395_10901383	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300020583\|Ga0210401_11100017	Not Available	653	Open in IMG/M
3300021046\|Ga0215015_11072893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2432	Open in IMG/M
3300021171\|Ga0210405_10204132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1567	Open in IMG/M
3300021171\|Ga0210405_10281586	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300021171\|Ga0210405_11330679	Not Available	526	Open in IMG/M
3300021178\|Ga0210408_10724700	Not Available	782	Open in IMG/M
3300021361\|Ga0213872_10153081	Not Available	1006	Open in IMG/M
3300021361\|Ga0213872_10170886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	942	Open in IMG/M
3300021372\|Ga0213877_10005614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	2988	Open in IMG/M
3300021401\|Ga0210393_10093284	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300021401\|Ga0210393_10254337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1425	Open in IMG/M
3300021404\|Ga0210389_10351797	Not Available	1157	Open in IMG/M
3300021404\|Ga0210389_11058686	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300021432\|Ga0210384_10774925	Not Available	856	Open in IMG/M
3300021433\|Ga0210391_10306480	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300021441\|Ga0213871_10048651	Not Available	1156	Open in IMG/M
3300021474\|Ga0210390_10010162	All Organisms → cellular organisms → Bacteria	7690	Open in IMG/M
3300021475\|Ga0210392_10451411	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300021475\|Ga0210392_11434302	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300021478\|Ga0210402_10146601	All Organisms → cellular organisms → Bacteria	2148	Open in IMG/M
3300021559\|Ga0210409_10833680	Not Available	795	Open in IMG/M
3300021559\|Ga0210409_10959511	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300022557\|Ga0212123_10082182	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2713	Open in IMG/M
3300022557\|Ga0212123_10318267	Not Available	1079	Open in IMG/M
3300025915\|Ga0207693_11031468	Not Available	627	Open in IMG/M
3300026865\|Ga0207746_1015596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300026910\|Ga0207840_1019415	Not Available	679	Open in IMG/M
3300027371\|Ga0209418_1107114	Not Available	501	Open in IMG/M
3300027502\|Ga0209622_1018045	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300027610\|Ga0209528_1106681	Not Available	619	Open in IMG/M
3300027680\|Ga0207826_1087897	Not Available	855	Open in IMG/M
3300027812\|Ga0209656_10001814	All Organisms → cellular organisms → Bacteria	13966	Open in IMG/M
3300027812\|Ga0209656_10005616	All Organisms → cellular organisms → Bacteria → Proteobacteria	8054	Open in IMG/M
3300027812\|Ga0209656_10018969	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Labilibacter → Labilibacter sediminis	4224	Open in IMG/M
3300027812\|Ga0209656_10488279	Not Available	540	Open in IMG/M
3300027812\|Ga0209656_10502644	Not Available	529	Open in IMG/M
3300027824\|Ga0209040_10033300	Not Available	3237	Open in IMG/M
3300027824\|Ga0209040_10056639	All Organisms → cellular organisms → Bacteria	2340	Open in IMG/M
3300027824\|Ga0209040_10181978	Not Available	1106	Open in IMG/M
3300027825\|Ga0209039_10184431	Not Available	855	Open in IMG/M
3300027895\|Ga0209624_10725960	Not Available	655	Open in IMG/M
3300027908\|Ga0209006_10048876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3804	Open in IMG/M
3300027908\|Ga0209006_10097690	Not Available	2605	Open in IMG/M
3300027911\|Ga0209698_10830325	Not Available	697	Open in IMG/M
3300028047\|Ga0209526_10554318	Not Available	742	Open in IMG/M
3300028047\|Ga0209526_10654425	Not Available	667	Open in IMG/M
3300028047\|Ga0209526_10755567	Not Available	607	Open in IMG/M
3300028047\|Ga0209526_10853377	Not Available	558	Open in IMG/M
3300028906\|Ga0308309_10053050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2935	Open in IMG/M
3300028906\|Ga0308309_11023200	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300029943\|Ga0311340_11273748	Not Available	587	Open in IMG/M
3300029999\|Ga0311339_11893487	Not Available	514	Open in IMG/M
3300030007\|Ga0311338_10961615	Not Available	833	Open in IMG/M
3300030503\|Ga0311370_11115558	Not Available	865	Open in IMG/M
3300030503\|Ga0311370_11540545	Not Available	692	Open in IMG/M
3300030618\|Ga0311354_10195062	Not Available	2170	Open in IMG/M
3300031236\|Ga0302324_100476969	Not Available	1831	Open in IMG/M
3300031718\|Ga0307474_11462192	Not Available	538	Open in IMG/M
3300032160\|Ga0311301_10089680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6166	Open in IMG/M
3300032160\|Ga0311301_11815018	Not Available	725	Open in IMG/M
3300033289\|Ga0310914_11720830	Not Available	531	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.33%
Host-Associated	Host-Associated	3.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.48%
Aquatic	Environmental → Aquatic	23.85%
Plants	Host-Associated → Plants	2.75%
Fungi	Host-Associated → Fungi	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.05%
Freshwater	Environmental → Aquatic → Freshwater	16.51%
Peat	Environmental → Terrestrial → Peat	6.42%
Thermal Springs	Environmental → Aquatic → Thermal Springs	5.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Sediment	Environmental → Aquatic → Sediment	1.83%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.45%
Loam	Environmental → Terrestrial → Soil → Loam	23.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.51%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.42%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	5.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	22.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.42%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.02%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	16.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.76%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.42%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	5.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.92%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010857	Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026865	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 75 (SPAdes)	Environmental	Open in IMG/M
3300026910	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1017984552	3300000364	Soil	MILSFVAGLFXLRELKILXEGDVERYQIVRAVSLITMTITPYLMPDPWNSVTVIAGSVGLVASFVVAPR*
JGI1027J11758_123401692	3300000789	Soil	MILSFVAGLFXLRELKILIEGDVERYQIVRAVSLITMTITPYLMPDPWNSVTVIAGSVGLVASFVVAPR*
JGIcombinedJ26739_1001530843	3300002245	Forest Soil	MSFLSILTMVLSCVAGLFALRELKILAEGDVEHFQIVRAISLVTMTITPYLMPDPWSSVAVIAGSLGLLVSFFLRPKDCL*
JGIcombinedJ26739_1006710682	3300002245	Forest Soil	GILRAQPKNFSARVARLFRMSFLSILTMILSFVAGLFAVRELKILAEGDVERFQIVRAIALVTMTITPYIMPDPWSSFAVIAGSLGLLVSFFLEPKRL*
JGI26341J46601_100017033	3300003219	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDFERYQVVRAISLVTMTIAPYFIPDPWNNAAVIAGLLGLVVSFFLKPKD*
JGI26341J46601_100303893	3300003219	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIREVKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPRDYL*
JGI26340J50214_100018683	3300003368	Bog Forest Soil	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPRDYL*
JGI26340J50214_100352191	3300003368	Bog Forest Soil	NTLEIIGMSLLSVAIMFLSFAAGLFAIRELKILAEGDFERYQVVRAISLVTMTIAPYFIPDPWNNAAVIAGLLGLVVSFFLKPKD*
JGI26340J50214_101718351	3300003368	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIREVKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFL
Ga0062385_109065972	3300004080	Bog Forest Soil	MSFFSVLIMFMSFGAGLFAMRELKILAEGDAERYQVVRAISLVTMTITPYFIPEPWNSVAVLAGLLGLAISVFLRPRGCL*
Ga0062386_1004991381	3300004152	Bog Forest Soil	MSFLSILTMILSFVAGLFAVRELKILAEGDIERYQVVRAISLVTMTVTPYLMPDPWNSAAVIAGSLGLVVSFFLEPRGSL*
Ga0062386_1005882471	3300004152	Bog Forest Soil	MQNAAGRVGEVFRMSFLSILTMILSFVAGLFAVRELKILCEGDVERFQIVRAVALVTMTITPYIMPDPWSAVVVIAGSLALVVSFFLEPRGSL*
Ga0062386_1009609612	3300004152	Bog Forest Soil	MSFLSILTIILSCIASLFLVRELKILAEGDVERYQIVRAISLAAMTITPYFMPDPWGGIAVIAGLLGVVVSFFLR
Ga0058899_120937401	3300004631	Forest Soil	MILSFVAGLFAVRELKILCEGDVERFQIVRAISLVTMTITPYLMAEPWNSGAVLAGALGLVVSFFLAPR*
Ga0070763_101738452	3300005610	Soil	MSFFSVLIMFLSFGAGLFAVRELKILTEGDVERYQVVRAVSLVTMTITPYFIPDPWNNVAVLAGLLGLVASFFLRPKGCL*
Ga0066903_1089718201	3300005764	Tropical Forest Soil	MSLLSVVIMFLSFGAGLFALRELKILAEGHVERYQVVRAISLITMTISPYFIPHPWNNVAVIAGLLGLAVSFFLKPKDYW*
Ga0070766_108092732	3300005921	Soil	MILSFVAGLFAVRELKILCEGDVERFQIVRAVALVTMTITPYIMPDPWSGITVIAGSLGLLVSFFLEPRGSL*
Ga0066789_100632333	3300005994	Soil	MSFLSVLIMFLSFGAGLFAVRELKMLAEGDVERYQVVRAISLVTMTITPYVLPEPWNTVAVLAGLLGLAGSFFLKPKGYW*
Ga0075014_1009374451	3300006174	Watersheds	MSLLSVAIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKD*
Ga0070765_1002152163	3300006176	Soil	MSFLSILTMILSFVAGLFAVRELKILCEGDVERFQIVRAVALVTMTITPYIMPDPWSGITVIAGSLGLLVSFFLEPRGSL*
Ga0070765_1019890881	3300006176	Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDFERYQVVRAISLITMTIAPYFIPDPWNNVTVIAGLLGLVVSFFLKPKD*
Ga0073928_100386314	3300006893	Iron-Sulfur Acid Spring	MILSFVAGLFAVRELKILAEGDVERFQIVRAIALVTMTITPYIMPDPWSSIAVIGGSLGLVVSFFLEPRGSL*
Ga0073928_101869761	3300006893	Iron-Sulfur Acid Spring	MSFLSILTMILSFVAGLFAVRELKILCEGDVERFQVVRAVALVTMTITPYIMPDPWNSAAVIAGSLGLVVSFFLEPRGSL*
Ga0073928_102839901	3300006893	Iron-Sulfur Acid Spring	MSFLSILTMILSFVAGLFAVRELKILAEGDVERFQIVRAIALVTMTITPYIMPDPWSSVAVIGGSLGLLVSFFLEPKRS*
Ga0073928_112171651	3300006893	Iron-Sulfur Acid Spring	MSLPSIFTMILSCAAGLFAVRELKILAEGDVETYQLVRAISLVTRTITPYFLPEPWNSVAVLTGLLGLAASF
Ga0116219_102209722	3300009824	Peatlands Soil	MSFLSILTIILSFVAGLFAVRELKILAEGDVERFQIVRAVALVTMTITPYIMPDPWSGVVVIAGSLGLLVSFFLEPKRS*
Ga0126384_117528652	3300010046	Tropical Forest Soil	LLSVVIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTISPYFIPHPWNNVAVIAGLLGLAVSFFLKPKDYW*
Ga0126373_103036232	3300010048	Tropical Forest Soil	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTISPYFIPHPWNNVAVIAGLLGLAVSFFLKPKDYW*
Ga0074044_100195101	3300010343	Bog Forest Soil	IMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPRDYL*
Ga0074044_100364722	3300010343	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIREVKILAEGDVEPYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYL*
Ga0136449_1003728402	3300010379	Peatlands Soil	MSLLSVAIMFLSFAAGLFAIREVKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYFQ*
Ga0136449_1012972872	3300010379	Peatlands Soil	MILSFVAGLFAVRELKILCEGDVERFQVVRAVALVTMTITPYIMPDPWSGITVIAGSLGLLVSFFLEPRGSL*
Ga0126354_10304582	3300010857	Boreal Forest Soil	MFLSFGAGLFAVRELKILAEGDVERYQIVRAISLVTMTITPYVLPEPWNTVAVLAGLLGLAGSFLLKPKGCW*
Ga0150983_121487592	3300011120	Forest Soil	MFLSLGAGLFAIREIKILAEGDAERYQVVRAISLVTMTITPYFTPEPWNSVAVLAGLLGLIVSFFLRPKGCL*
Ga0150983_122676502	3300011120	Forest Soil	MILSFVAGLFAVRELKILCEGDVERFQIVRAISLVTMTITPYLMPDPWISVAVIAGSLGLVVSFFLRPKGCL*
Ga0153943_10850362	3300012177	Attine Ant Fungus Gardens	MSLLSVVIMFLSFAAGLFVIRELKILAEGDVERYQVVRAISLITITIAPYFIPDPWNNAAVIAGLLGLVVSFFLKPKDYL*
Ga0137362_112616062	3300012205	Vadose Zone Soil	MSVLSIFTMILSFVAGLFAVSEPKILIEGDVERYQIVRALSLITMTITPYLMPDPWNSVTVIAGSVGLVASFVVEPR*
Ga0164300_107744582	3300012951	Soil	MFLSFGAGLFAVRELKIIAEGDVERYQVIRAISLILMAVAPYFIPEPWNTIAVLAGLLALLTSFFLKPKGCS*
Ga0164298_104690241	3300012955	Soil	LSFLSVLIMFLSFGAGLFAMRELKIIADGDVERYQVIRAISLILMAGAPYFIPDPWNTVAVLAGLLALLTSFFLKLKGCL*
Ga0164302_103143171	3300012961	Soil	MFLSFGAGLFAVRELKIIAEGDVERYQVIRAISLILMAVAPYFIPEPWNTIAVLAGLLALLTSFFLKPKGCL*
Ga0164307_100433294	3300012987	Soil	LSFLSVLIMFLSFGAGLFAMRELKIIADGDVERYQVIRAISLILMAGAPYFIPDPWNTVAVLAGLLALLTSFFLKPKGCL*
Ga0182032_114475231	3300016357	Soil	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLVTMTIAPYFIPDPWNSVGVIAGLLGLVVSFFLKPKDYW
Ga0210407_100583041	3300020579	Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDFERYQVVRAISLITMTIAPYFIPDPWNNVTVIAGLLGLVVSFFLKPKD
Ga0210407_100846782	3300020579	Soil	MSFFSVLIMFLSFGAGLFAVRELKILTEGDVERYQVVRAVSLVTMTITPYFIPDPWNNVAVLAGLLGLVASFFLRPKGCL
Ga0210403_105221611	3300020580	Soil	YPQLNTLEAIGMSLLSVAIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLVTMTITPYFIPDPWNNVAVLSGLLGLVASFFLRPKGCW
Ga0210403_106493691	3300020580	Soil	MSFFSVLIMFLSFGAGLFAVRELKILTEGDVERYQVVRAVSLVTMTITPYFIPDPWNNVAVLAGL
Ga0210399_115326681	3300020581	Soil	MSLLSVTIMFLSFAAGLFAIRELKILAEGDIERYQVVRAISLITMTIAPYFIPDPWNNVTVIAGLLGLVVSF
Ga0210395_109013832	3300020582	Soil	MFLSFGAGLFAVRELKILAEGDAERYQFVRAVSLVTMTIAPYFIPEPWNSVVVLAGLVGLAISFFLRPKGCF
Ga0210401_111000172	3300020583	Soil	MSLLSVTIMFLSFAAGLFAIRELKILAEGDIERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYL
Ga0215015_110728932	3300021046	Soil	MGFLSVFIMFLSFGAGLFAVRELKILAEGDVERYQVVRAISLITMTITPYFIPDPWNNVAVIAGLSGLVVSFFLKPKG
Ga0210405_102041322	3300021171	Soil	VLFYFGRRQRADMSVLSIFTMILSFVAGLFALRELKILIEGDVERYQIVRAISLITMTITPYLMADPWNSVAVIAGSVGLVASFVVEPR
Ga0210405_102815861	3300021171	Soil	MSVLSIFTMILSFVAGLFALRELKILIEGDVERYQIVRALSLITTTITPYLMPDPWNSVTVIAGSVGLVASFVVEPR
Ga0210405_113306791	3300021171	Soil	MILSFVAGLFALRELKILIEGDVERYQVVRAISLITMTITPYLMADPWNSVAVIAGSVGLVASFVVEPR
Ga0210408_107247002	3300021178	Soil	MSLLSVLVMFLSFCAGLFALRELKMLAEEDVERYQVVRAVSLIAMTITPYFFAEPWNGVAVLAGFTGLIVSFFLRPKGCL
Ga0213872_101530812	3300021361	Rhizosphere	MSLLSVLIMFLSFGAGLFALRELKILAEGDVERYQVVRAISLITMTLSPYFIPHPWNNVAVIAGLLGLAVSFFLKPKDYW
Ga0213872_101708861	3300021361	Rhizosphere	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTLSPYFIPHPWNNVAVIAGLLGLAVSFFLKPKDYW
Ga0213877_100056144	3300021372	Bulk Soil	MSLLSVVIMFLSFGAGLFALRELKILAEGDVERYQVVRAISLITMTLSPYFIPHPWNNVAVIAGLLGLAVSFFLKPKDYW
Ga0210393_100932843	3300021401	Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDVEPYQVVRAISLITMTITPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYL
Ga0210393_102543372	3300021401	Soil	MSFLSVLTIILSCVAGLFLVRELKILVEGDVERYQVVRAVSLVTMTITPYFIPEPWNSVAVLAGSLGLAVSFFLRPKDCL
Ga0210389_103517972	3300021404	Soil	MSFFSVLIMFLSFGAGLFAVRELKILTEGDVERYQVVRAVSLVTMTITPYFIPDPWNNVAVLAGWSPLS
Ga0210389_110586861	3300021404	Soil	SYRSSRSSAKRLENVRMSFLSVLTIILSCVAGLFLVRELKILVEGDVERYQVVRAVSLVTMTITPYFIPEPWNSVAVLAGSLGLAVSFFLRPKDCL
Ga0210384_107749252	3300021432	Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDFERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDY
Ga0210391_103064802	3300021433	Soil	MSFFSVLIMFLSFGAGLFAVRELKILTEGDVERYQVVRAVSLVTMTITPYFIPDPWNNVAVLAGLLGFVSSFFLRPKGCL
Ga0213871_100486513	3300021441	Rhizosphere	MSYLSILTMVLSFVAGLFTVRELKILADEDVERYQVVRAISLITMTVSPYFMPEPWNSVAVLAGSIGLLVSFFVKPNGCW
Ga0210390_100101623	3300021474	Soil	MSFLSVFIMFLSFGAGLFAVRELKILAEGDAERYQVVRGISLVTMTIAPYLIPEPWNSVAVLAGLVGLVISFFLRPKGCL
Ga0210392_104514111	3300021475	Soil	PILNATICQLHLRRCTKAETMSFLSVFIMFLSFGAGLFAVRELKILAEGDAERYQFVRAISLVTMTIAPYFIPEPWNSVAVLGGLLGLAISFFLKPKGCW
Ga0210392_114343021	3300021475	Soil	VRMSFLSVLTIILSCVAGLFLVRELKILVEGDVERYQVVRAVSLVTMTITPYFIPEPWNSVAVLAGSLGLAVSFFLRPKDCL
Ga0210402_101466014	3300021478	Soil	MSFLSVFIMFLSFGAGLFAVRELKILAEGDAERYQFVRAISLVTMTIAPYFIPEPWNSVAVLAGLLGLAISFFLKPKGCW
Ga0210409_108336802	3300021559	Soil	VTIMFLSFAAGLFAIRELKILAEGDIERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYL
Ga0210409_109595111	3300021559	Soil	MFLSFGAGLFAVRELKILTEGDVERYQVVRAVSLVTMTITPYFIPDPWNNVAVLAGLLGLVASFFLRPKGCL
Ga0212123_100821822	3300022557	Iron-Sulfur Acid Spring	MILSFVAGLFAVRELKILAEGDVERFQIVRAIALVTMTITPYIMPDPWSSIAVIGGSLGLVVSFFLEPRGSL
Ga0212123_103182672	3300022557	Iron-Sulfur Acid Spring	MILSFVAGLFAVRELKILCEGDVERFQVVRAVALVTMTITPYIMPDPWNSAAVIAGSLGLVVSFFLEPRGSL
Ga0207693_110314681	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MILSFVAGLFALRELKILIEGDVERYQIVRAISLITMTITPYLMPDPWNSVTVLAGSVGLVASFVVEPR
Ga0207746_10155962	3300026865	Tropical Forest Soil	LSVVIMFLSFAAGLFAIRELKILAEGDVKRYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKGYFQ
Ga0207840_10194152	3300026910	Tropical Forest Soil	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVKRYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKGY
Ga0209418_11071141	3300027371	Forest Soil	DDLAYWVYDHTLEIFGMSLLSVAIMFLSFAAGLFAIRELKILAEGDAERYQVVRAISLITMTISPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDY
Ga0209622_10180453	3300027502	Forest Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDAERYQVVRAISLITMTISPYFIPDPWNNAAVIAGLLGLVVSFFLKPKDYL
Ga0209528_11066811	3300027610	Forest Soil	SFLSILTMVLSCVAGLFLVRELKILAEGDVERYQVVRAISLVTMTITPYFMPEAWNSVAVIAGLLGLVVSFFLRPKDCL
Ga0207826_10878972	3300027680	Tropical Forest Soil	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVKRYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKGYFQ
Ga0209656_100018144	3300027812	Bog Forest Soil	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPRDYL
Ga0209656_100056162	3300027812	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDFERYQVVRAISLVTMTIAPYFIPDPWNNAAVIAGLLGLVVSFFLKPKD
Ga0209656_100189699	3300027812	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIREVKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYFQ
Ga0209656_104882791	3300027812	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIRELKILADGDVERYQVVRALSLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDHL
Ga0209656_105026441	3300027812	Bog Forest Soil	MSFLSILTMILSFVAGLFAVRELKILCEGDVERFQIVRAVALVTMTITPYIMPDPWSGITVIAGSLALVVSFFLEPKRS
Ga0209040_100333003	3300027824	Bog Forest Soil	MSLLSVVIMFLSFAAGLFAIRELKILADGDVECYQVVRAISLITMTITPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYL
Ga0209040_100566391	3300027824	Bog Forest Soil	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLK
Ga0209040_101819781	3300027824	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIREVKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLK
Ga0209039_101844312	3300027825	Bog Forest Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTIAPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYFQ
Ga0209624_107259602	3300027895	Forest Soil	MSFLSVLTMFLSLGAGLFAIREIKILAEGDAERYQVVRAISLVTMTITPYFTPEPWNSVAVLAGFLGLVVSFFLRPKGCL
Ga0209006_100488762	3300027908	Forest Soil	MSFLSILTMILSFVAGLFAVRELKILAEGDVERFQIVRAIALVTMTITPYIMPDPWSSFAVIAGSLGLLVSFFLEPKRL
Ga0209006_100976902	3300027908	Forest Soil	MSFLSVLIMFLSFGAGLFAVRELKILAEGDAERYQFVRAISLVTMTVAPYFIPEPWNSAAVLAGLVGLVVSFFLRPKGCW
Ga0209698_108303252	3300027911	Watersheds	MSVLSIFTMILSFVAGLFALRELKILIEGDVERYQVVRALSLITMTITPYFIPDPWNNVAVIAGLLGLVVSFFLKPKDYFQ
Ga0209526_105543181	3300028047	Forest Soil	MSLLSVAIMFLSFAAGLFAIRELKILAEGDIERYQVVRAISLITMTIAPYFIPDPWNNVAVIVGLLGLVVSFFLRPKDCL
Ga0209526_106544251	3300028047	Forest Soil	MSFLSVLIMFLSFGAGLFAVRELKMLAEGDAERYQVVRAISLVTMTITPYVLPEPWNTVAVLAGLLGLVGSFFLKPKGCW
Ga0209526_107555671	3300028047	Forest Soil	MILSFVAGLFAVRELKILAEGDVERFQVVRAVALVTMTITPYIMPDPWSGFVVIAGSLGLIVSFFLEPKRL
Ga0209526_108533772	3300028047	Forest Soil	MILSFVAGLFAVRELKILADGDVERYQVVRAISLVTMTITPYFMPEPWNSVAVLAGSLG
Ga0308309_100530503	3300028906	Soil	MSFLSILTMILSFVAGLFAVRELKILCEGDVERFQIVRAVALVTMTITPYIMPDPWSGITVIAGSLGLLVSFFLEPRGSL
Ga0308309_110232001	3300028906	Soil	IMFLSFGAGLFAVRELKILTEGDVERYQVVRAVSLVTMTITPYFIPDPWNNVAVLAGLLGLVASFFLRPKGCL
Ga0311340_112737481	3300029943	Palsa	YLSFLSVLTMFLSLGAGLFAIRELKILAEGDAELYQVVRAVSLVTMTITPYFTPEPWNSIAVLAGLLGLVVSFFLRPKGCL
Ga0311339_118934871	3300029999	Palsa	MVLSLVAGLFAVRELKILAEGDVERYQIVRAISLVTMTITPYFMPEPWNSIAVLAGAVGLAVSFFLRPKGCW
Ga0311338_109616152	3300030007	Palsa	MFLSLGAGLFAIRELKILAEGDAELYQVVRAVSLVTMTITPYFTPEPWNSIAVLAGLLGLVVSFFLRPKGCL
Ga0311370_111155582	3300030503	Palsa	MSFLSVLTMFLSLGAGLFAIREIKILAEGDAERYQVVRAISLVTMTITPYFTPEPWNSVAILAGFLGLVVSFFLRPKGCL
Ga0311370_115405452	3300030503	Palsa	ERSRMSFLSVLTMVLSLVAGLFAVRELKILAEGDVERYQIVRAISLVTMTITPYFMPEPWNSIAVLAGAVGLAVSFFLRPKGCW
Ga0311354_101950622	3300030618	Palsa	MSFISVLTMVLSLVAGLFAVRELKILAEGDVERYQIVRAISLVTMTITPYFMPEPWNSIAVLAGAVGLAVSFFLRPKGCW
Ga0302324_1004769692	3300031236	Palsa	MSFLSILTIVLSFIAGLFAIRELKILAEGDVERYQIVRAISLVTMTITPYFMPEPWNSIAVLAGLVGLIASFFLRPKGCW
Ga0307474_114621921	3300031718	Hardwood Forest Soil	MSFFSVLIMFLSFGAGLFAVRELKILTEGDVESYQVVRAVSLVTMTITPYFIPDPWNNVAVLAGLLGLVASFFLRPKGCL
Ga0311301_100896802	3300032160	Peatlands Soil	MSFLSILTIILSFVAGLFAVRELKILAEGDVERFQIVRAVALVTMTITPYIMPDPWSGVVVIAGSLGLLVSFFLEPKRS
Ga0311301_118150181	3300032160	Peatlands Soil	MILSFVAGLFAVRELKILCEGDVERFQVVRAVALVTMTITPYIMPDPWSGITVIAGSLGLLVSFFLEPRGSL
Ga0310914_117208302	3300033289	Soil	MSLLSVVIMFLSFAAGLFAIRELKILAEGDVERYQVVRAISLITMTISPYFIPHPWNNVAVIAGLLGLVVSFFLKPKDYW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089287

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences