Metagenome / Metatranscriptome Family F089286

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089286
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	42 residues
Representative Sequence	MLALRYLLIAGGLGMILVAVSILGYDLYRELLYRRALATPG
Number of Associated Samples	97
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	87.16 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.413 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (25.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.633 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.62% β-sheet: 0.00% Coil/Unstructured: 46.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03734	YkuD	49.54
PF10009	DUF2252	10.09
PF12838	Fer4_7	5.50
PF13430	DUF4112	0.92
PF00078	RVT_1	0.92
PF02274	ADI	0.92
PF06662	C5-epim_C	0.92
PF02685	Glucokinase	0.92
PF03576	Peptidase_S58	0.92
PF00144	Beta-lactamase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	49.54
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	49.54
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	1.83
COG0837	Glucokinase	Carbohydrate transport and metabolism [G]	0.92
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.92
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	0.92
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	0.92
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.92
COG4874	Uncharacterized conserved protein	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	82.57 %
Unclassified	root	N/A	4.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	32.11 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.42 %
Unclassified	root	N/A	4.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.11 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.50 %
Unclassified	root	N/A	4.59 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.11 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.50 %
Unclassified	root	N/A	4.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.11 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.59 %
Unclassified	root	N/A	4.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.11 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.59 %
Unclassified	root	N/A	4.59 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.11 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.59 %
Unclassified	root	N/A	4.59 %
Bradyrhizobium sp. CCBAU 051011	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	0.92 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10020134	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4144	Open in IMG/M
3300000650\|AP72_2010_repI_A1DRAFT_1017344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300001661\|JGI12053J15887_10130064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1339	Open in IMG/M
3300003505\|JGIcombinedJ51221_10337707	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300004479\|Ga0062595_101366035	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300005436\|Ga0070713_100022667	All Organisms → cellular organisms → Bacteria → Acidobacteria	4856	Open in IMG/M
3300005532\|Ga0070739_10139183	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1305	Open in IMG/M
3300005541\|Ga0070733_10216887	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1254	Open in IMG/M
3300005541\|Ga0070733_10337593	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	998	Open in IMG/M
3300005541\|Ga0070733_11004640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300005560\|Ga0066670_11026974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300005563\|Ga0068855_100552275	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1246	Open in IMG/M
3300005566\|Ga0066693_10026578	All Organisms → cellular organisms → Bacteria → Acidobacteria	1798	Open in IMG/M
3300005712\|Ga0070764_10013882	All Organisms → cellular organisms → Bacteria	3976	Open in IMG/M
3300005889\|Ga0075290_1023139	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	772	Open in IMG/M
3300005944\|Ga0066788_10004520	All Organisms → cellular organisms → Bacteria	2781	Open in IMG/M
3300006174\|Ga0075014_100976511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300006794\|Ga0066658_10468866	Not Available	685	Open in IMG/M
3300006904\|Ga0075424_100976380	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300009522\|Ga0116218_1041271	All Organisms → cellular organisms → Bacteria	2087	Open in IMG/M
3300009523\|Ga0116221_1098090	All Organisms → cellular organisms → Bacteria → Acidobacteria	1298	Open in IMG/M
3300009645\|Ga0116106_1147988	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300010379\|Ga0136449_100477219	All Organisms → cellular organisms → Bacteria	2176	Open in IMG/M
3300012683\|Ga0137398_10973922	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300012987\|Ga0164307_11733244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300014165\|Ga0181523_10131483	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300014169\|Ga0181531_10047296	All Organisms → cellular organisms → Bacteria → Acidobacteria	2511	Open in IMG/M
3300016270\|Ga0182036_11243082	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300016404\|Ga0182037_10486352	All Organisms → cellular organisms → Bacteria → Acidobacteria	1032	Open in IMG/M
3300017936\|Ga0187821_10148064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	885	Open in IMG/M
3300017942\|Ga0187808_10591303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300017943\|Ga0187819_10112789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1623	Open in IMG/M
3300017955\|Ga0187817_10033847	All Organisms → cellular organisms → Bacteria	3107	Open in IMG/M
3300017959\|Ga0187779_10020076	All Organisms → cellular organisms → Bacteria	3806	Open in IMG/M
3300017959\|Ga0187779_11326620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300017972\|Ga0187781_10387690	All Organisms → cellular organisms → Bacteria → Acidobacteria	996	Open in IMG/M
3300017973\|Ga0187780_10312513	All Organisms → cellular organisms → Bacteria → Acidobacteria	1106	Open in IMG/M
3300017973\|Ga0187780_11120648	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300018040\|Ga0187862_10319387	All Organisms → cellular organisms → Bacteria → Acidobacteria	975	Open in IMG/M
3300018088\|Ga0187771_10278492	All Organisms → cellular organisms → Bacteria → Acidobacteria	1399	Open in IMG/M
3300018431\|Ga0066655_10164631	All Organisms → cellular organisms → Bacteria → Acidobacteria	1333	Open in IMG/M
3300020582\|Ga0210395_10236901	All Organisms → cellular organisms → Bacteria → Acidobacteria	1371	Open in IMG/M
3300020583\|Ga0210401_10217257	All Organisms → cellular organisms → Bacteria → Acidobacteria	1770	Open in IMG/M
3300021181\|Ga0210388_11784836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300021402\|Ga0210385_10020621	All Organisms → cellular organisms → Bacteria	4170	Open in IMG/M
3300021405\|Ga0210387_10313388	All Organisms → cellular organisms → Bacteria → Acidobacteria	1382	Open in IMG/M
3300021406\|Ga0210386_10360354	All Organisms → cellular organisms → Bacteria → Acidobacteria	1251	Open in IMG/M
3300021406\|Ga0210386_11316958	Not Available	608	Open in IMG/M
3300021420\|Ga0210394_10475964	All Organisms → cellular organisms → Bacteria → Acidobacteria	1099	Open in IMG/M
3300021432\|Ga0210384_10434334	All Organisms → cellular organisms → Bacteria → Acidobacteria	1183	Open in IMG/M
3300021433\|Ga0210391_10255054	All Organisms → cellular organisms → Bacteria → Acidobacteria	1377	Open in IMG/M
3300021478\|Ga0210402_10174429	All Organisms → cellular organisms → Bacteria → Acidobacteria	1968	Open in IMG/M
3300021559\|Ga0210409_10394312	All Organisms → cellular organisms → Bacteria → Acidobacteria	1239	Open in IMG/M
3300021560\|Ga0126371_13115197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300022728\|Ga0224566_107235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300024331\|Ga0247668_1106055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300025576\|Ga0208820_1120393	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300025612\|Ga0208691_1008029	All Organisms → cellular organisms → Bacteria	2804	Open in IMG/M
3300026011\|Ga0208532_1014891	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300026023\|Ga0207677_10573461	All Organisms → cellular organisms → Bacteria → Acidobacteria	987	Open in IMG/M
3300026334\|Ga0209377_1174432	All Organisms → cellular organisms → Bacteria → Acidobacteria	767	Open in IMG/M
3300026467\|Ga0257154_1006094	Not Available	1576	Open in IMG/M
3300027266\|Ga0209215_1025956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	771	Open in IMG/M
3300027565\|Ga0209219_1110282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300027648\|Ga0209420_1056554	All Organisms → cellular organisms → Bacteria → Acidobacteria	1168	Open in IMG/M
3300027652\|Ga0209007_1067274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300027678\|Ga0209011_1111067	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300027701\|Ga0209447_10060936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1037	Open in IMG/M
3300027825\|Ga0209039_10188723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	843	Open in IMG/M
3300027854\|Ga0209517_10008805	All Organisms → cellular organisms → Bacteria	11730	Open in IMG/M
3300027875\|Ga0209283_10082122	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2089	Open in IMG/M
3300027884\|Ga0209275_10241516	All Organisms → cellular organisms → Bacteria → Acidobacteria	988	Open in IMG/M
3300027884\|Ga0209275_10348394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300027895\|Ga0209624_11050631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300027898\|Ga0209067_10622285	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300027898\|Ga0209067_10668042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300027903\|Ga0209488_11061578	Not Available	556	Open in IMG/M
3300027908\|Ga0209006_10192876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1773	Open in IMG/M
3300027911\|Ga0209698_10089971	All Organisms → cellular organisms → Bacteria → Acidobacteria	2585	Open in IMG/M
3300028800\|Ga0265338_10138965	All Organisms → cellular organisms → Bacteria → Acidobacteria	1905	Open in IMG/M
3300028801\|Ga0302226_10157783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	984	Open in IMG/M
3300028863\|Ga0302218_10078604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1033	Open in IMG/M
3300028866\|Ga0302278_10275264	All Organisms → cellular organisms → Bacteria → Acidobacteria	793	Open in IMG/M
3300028906\|Ga0308309_11212366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300028906\|Ga0308309_11645140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300029883\|Ga0311327_10500206	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300029914\|Ga0311359_10851255	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300030007\|Ga0311338_12000159	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300030841\|Ga0075384_11495213	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300030879\|Ga0265765_1050172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300031236\|Ga0302324_101608831	All Organisms → cellular organisms → Bacteria → Acidobacteria	837	Open in IMG/M
3300031524\|Ga0302320_11510221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300031573\|Ga0310915_11240392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300031715\|Ga0307476_10502366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300031715\|Ga0307476_10590992	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300031720\|Ga0307469_12412908	Not Available	513	Open in IMG/M
3300031754\|Ga0307475_11021978	All Organisms → cellular organisms → Bacteria → Acidobacteria	649	Open in IMG/M
3300031823\|Ga0307478_10150044	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1849	Open in IMG/M
3300031823\|Ga0307478_10152111	All Organisms → cellular organisms → Bacteria → Acidobacteria	1836	Open in IMG/M
3300031938\|Ga0308175_101244286	All Organisms → cellular organisms → Bacteria → Acidobacteria	828	Open in IMG/M
3300031946\|Ga0310910_10234088	All Organisms → cellular organisms → Bacteria → Acidobacteria	1433	Open in IMG/M
3300031962\|Ga0307479_11072669	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300031996\|Ga0308176_12185451	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300032160\|Ga0311301_10947999	All Organisms → cellular organisms → Bacteria → Acidobacteria	1149	Open in IMG/M
3300032160\|Ga0311301_11078063	All Organisms → cellular organisms → Bacteria → Acidobacteria	1049	Open in IMG/M
3300032805\|Ga0335078_11802097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300032828\|Ga0335080_10810848	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300033158\|Ga0335077_10420116	All Organisms → cellular organisms → Bacteria → Acidobacteria	1432	Open in IMG/M
3300033158\|Ga0335077_10771401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	982	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.33%
Host-Associated	Host-Associated	3.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.65%
Aquatic	Environmental → Aquatic	14.68%
Plants	Host-Associated → Plants	3.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.39%
Freshwater	Environmental → Aquatic → Freshwater	11.01%
Peat	Environmental → Terrestrial → Peat	7.34%
Sediment	Environmental → Aquatic → Sediment	3.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.71%
Loam	Environmental → Terrestrial → Soil → Loam	13.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.34%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.26%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.67%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.67%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000650	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022728	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300026011	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301 (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030841	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100201347	3300000567	Peatlands Soil	MLALRYLLIAGGLGMILVAVSILGYDLYRELLYRRALAXXGXGIDLAGVQHCG
AP72_2010_repI_A1DRAFT_10173443	3300000650	Forest Soil	MLALKYLLMCGGFGMILVAVGILGYDWYAETLYRRALATPGAHVPPIPERR
JGI12053J15887_101300641	3300001661	Forest Soil	MLALKYLLVVGGLGMILVAVSILAYDLYREMLYRRRLAVTGAGSVEP
JGIcombinedJ51221_103377071	3300003505	Forest Soil	MLALKYLLITGGLGMILVAVGILGYDLYRELLYRRALATPGGSSLGGSLPAQP
Ga0062595_1013660351	3300004479	Soil	MLALRNLLMYGGFGMILVALGILAFDLYRELLYRRALATPGITPIPR
Ga0070713_1000226671	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLALKYLLMFGGFGMILVAVGILGYDLYAEMLRRRALATPGADVPPI
Ga0070739_101391833	3300005532	Surface Soil	MLFLKYILMAGGFGMILIAIAILGYDLYLNLQYKRALAIPGAT
Ga0070733_102168871	3300005541	Surface Soil	MLALRYLLMCGGLGMILVAVGILGYDLYHELLYRRALATPGAEALPPL
Ga0070733_103375931	3300005541	Surface Soil	MLALKYLLITCGVGMMIAAVCILTYDLYREMLYRRAL
Ga0070733_110046401	3300005541	Surface Soil	MLALKYFLIAAGLGMILVAVSILGFDLYRELLYRRAV
Ga0066670_110269742	3300005560	Soil	MLTLKYLLIAGGLGMILVAVSILGYDLYREFVYRRLLATPGASPLPPL
Ga0068855_1005522753	3300005563	Corn Rhizosphere	MLVLRNLLMYGGFGMILVAMGILGYDLYLEVLYRKALATPGVTPI
Ga0066693_100265784	3300005566	Soil	MLALRNLLMYGGFGMILAAMGILAYDLYREVAYRRALAMPGITLIP
Ga0070764_100138826	3300005712	Soil	MLTLKVLLMAGGLGMILAAVCILGYDLYRELARRSAVA
Ga0075290_10231393	3300005889	Rice Paddy Soil	MLVLRNLLMYGGFGMILVAVGILGYDLYLEVLYRK
Ga0066788_100045201	3300005944	Soil	MTTLKYLLMAGGFGMMFAALGILIYDLYRERLYRN
Ga0075014_1009765112	3300006174	Watersheds	MLTLKYLLMSGGFGMILVAMGILGYDLYEDVLYRRALATPGAALPAATK
Ga0066658_104688662	3300006794	Soil	MLALKYLLITGGLGMMIAAVCILTYDLYREMLYRRTLETPGGTVTA
Ga0075424_1009763801	3300006904	Populus Rhizosphere	MLALRYLLMCSGLGMILVAVGILGYDLYREWLYRSAL
Ga0116218_10412711	3300009522	Peatlands Soil	MLALKYLLMAGGLGMILVAVSILGYDSYRELLYRRALAAPGAGTLPPLPQ
Ga0116221_10980903	3300009523	Peatlands Soil	MLALRYLLIAGGLGMILVAVSILGYDLYRELLYRRALATPGASPVPPLP
Ga0116106_11479881	3300009645	Peatland	MLALKYLLITGGLGMMFAALCMLTYDLHREMVYRRALETP
Ga0136449_1004772191	3300010379	Peatlands Soil	MLALRYLLITCGVGMMIAAVCILTYDLYREMLYRRLLATP
Ga0137398_109739221	3300012683	Vadose Zone Soil	MLALRNLLIAGGLGMILVAVSILLYDLYHEVLYRRAIAEP
Ga0164307_117332443	3300012987	Soil	MLALRYLLMCGGLGMILVAVGILGDDLYREMLYRRALAMPG
Ga0181523_101314834	3300014165	Bog	MLALKYLLITGGLGMMIAAVGILIYDLYRDLLYRRASMT
Ga0181531_100472964	3300014169	Bog	MLALKYLLITGGLGMIFAAVCILTYDLYREMLYRRALE
Ga0182036_112430821	3300016270	Soil	MLALRYLLMCGGLGMILVAVGILGYDLYRELLYRRAMATPGLTPIPAEP
Ga0182037_104863521	3300016404	Soil	MLALKYLLMCGGLGMILAALSILGYDSYRELLYRKALATPGSTLPA
Ga0187821_101480641	3300017936	Freshwater Sediment	MLVLRNLLMYGGFGMILVALGILAFDLYRELLYRRALATPG
Ga0187808_105913033	3300017942	Freshwater Sediment	MLALKYLLMTGGLGMILVAVGILGYDSYRELLYRRALATPGG
Ga0187819_101127893	3300017943	Freshwater Sediment	MLALKYLLITGGLGMILVAVSILGYDLYRELMYRRALAA
Ga0187817_100338475	3300017955	Freshwater Sediment	MLALRYLLILGGLGMILAAVSILGYALYRERLFLW
Ga0187779_100200767	3300017959	Tropical Peatland	MLALKYLLVAGGLGMILAAVSILGYDLYRELLYRRA
Ga0187779_113266203	3300017959	Tropical Peatland	MLALKYLLLTVGLGMILAAVSILSYDLYLYLLYRGSLATPGDGTRL
Ga0187781_103876901	3300017972	Tropical Peatland	MLALKYLLISVGLGMILVAVSILAYDLYRELLYRRA
Ga0187780_103125131	3300017973	Tropical Peatland	MLALKYLLISGGLGMILAAVSILGYDLYRELLYRRALA
Ga0187780_111206481	3300017973	Tropical Peatland	MLALKYLLVAGGLGMILAAVSILGYDLYRELLYRRAQATPG
Ga0187862_103193871	3300018040	Peatland	MLALKYLLIMGGLGMMLAAVCILTYDLYREMLYRRA
Ga0187771_102784923	3300018088	Tropical Peatland	MLALKYLLISGGLGMILVAVGILGYDLFRELQYRRALATPGAGALPPV
Ga0066655_101646311	3300018431	Grasslands Soil	MLALKYLLISGGLGMILAALSILSYDLYRELMYRRS
Ga0210395_102369011	3300020582	Soil	MLTLKYLLMCGGFGMILVAVGILGYDLYLEMLYRRVLAA
Ga0210401_102172573	3300020583	Soil	MLALRYLLITCGVGMMIAAVCILTYDIYREMLYRRLLQTPG
Ga0210388_117848361	3300021181	Soil	MLALKYLLIAGGLGMIFVALAILLYDVYREVLYRRALAAPEGTVVVPPHPEMR
Ga0210385_100206216	3300021402	Soil	MLALRYLLITCGVGMMIAAVCILTYDLYRELLYRRLVATPGGA
Ga0210387_103133883	3300021405	Soil	MLALRNLLMAGGLGMILVAVSILLYDLYHEVMYRRA
Ga0210386_103603544	3300021406	Soil	MLTLKYLLMCGGFGMILVAVGILGYDLYLEMLYRRALAAPGAALPPAAKWR
Ga0210386_113169582	3300021406	Soil	MLALRYLLITCGVGMMIAAVCILTYHLYREMLYRRLLATPGRAVS
Ga0210394_104759641	3300021420	Soil	MLALKYLLITGGLGMILVAMSILAYDLYRELMYRRAL
Ga0210384_104343343	3300021432	Soil	MLALKYLLVTCGLGMILAALSILAYDLYLEMLYRRALAA
Ga0210391_102550543	3300021433	Soil	MLALRDLLIAGGLGMILVAVSILLYDLYQEVLYRRALTAPIGEG
Ga0210402_101744294	3300021478	Soil	MLTLKQWLIAGGLGMILTAASILSYDLYRAVLYRRALSTPGARSAAPLP
Ga0210409_103943121	3300021559	Soil	MLTLKYLLMCGGFGMILVAVGILGYDLYLEMLYRRVLAAPGA
Ga0126371_131151971	3300021560	Tropical Forest Soil	MLALRYLLMCGGLGMILVAMGILGYDLYRELLYRRAMATPGVTPIPAEPEWR
Ga0224566_1072353	3300022728	Plant Litter	MLALKYLLIMCGLGMIFGAVCILTYDLYRELLYRRALETPGGAVSARP
Ga0247668_11060551	3300024331	Soil	MLALRYLLMCGGLGMILVAVGILGYDLYREWLYRSALATPG
Ga0208820_11203933	3300025576	Peatland	MLALRYLLITGGLGMILAAVSILGYDLYRELMYRRALATPGEGPL
Ga0208691_10080291	3300025612	Peatland	MLALKYLLIMCGLGMIFGAVCILTYDLYREMLYRRALE
Ga0208532_10148913	3300026011	Rice Paddy Soil	MLVLRNLLMYGGFGMILVAVGILGYDLYLEVLYRKALATPGV
Ga0207677_105734613	3300026023	Miscanthus Rhizosphere	MLVLRNLLMYGGFGMILMAMGILGYDLYLEVLYRKALATPGVTPIAT
Ga0209377_11744323	3300026334	Soil	MLALRYLLMCGGFGMILVAVGILGFDLYEEALYRRALATPGAALPHVTKCR
Ga0257154_10060943	3300026467	Soil	MLVLKYLLMSGGVGMMIVAVGILAYDLYREVLYRRALATT
Ga0209215_10259561	3300027266	Forest Soil	MLALKYLLMTGGLGLMLAALGILGYDLYREILYRRALSTPGATV
Ga0209219_11102822	3300027565	Forest Soil	MLALKYLLITGGLGMILAALGILGYDLYRELLYRRALATPGTGTVLAPP
Ga0209420_10565541	3300027648	Forest Soil	MLALKYLLITCGVGMMIAAVCMLTYDLYREMLYRR
Ga0209007_10672743	3300027652	Forest Soil	MLALRYLLITCGLGMIFAAVCILTYDLYREMAYRRALETPGEAA
Ga0209011_11110671	3300027678	Forest Soil	MLALKYLLVVGGLGMILVAVSILAYDLYREMLYRRTLAVTG
Ga0209447_100609361	3300027701	Bog Forest Soil	MLALRYLLITCGVGMMIAAVCILTYDLYREMLYRRLLATPGGA
Ga0209039_101887231	3300027825	Bog Forest Soil	MLALKYLLITGGLGMILLAVCILTYDLYREMLYRRALEAP
Ga0209517_100088051	3300027854	Peatlands Soil	MLALRYLLIAGGLGMILVAVSILGYDLYRELLYRRALATPG
Ga0209283_100821221	3300027875	Vadose Zone Soil	MLALKYLLIVGGLGMILVAVSILAYDLYREMLYRR
Ga0209275_102415161	3300027884	Soil	MLALKYLLITGGLGMILVAMSILAYDLYRELMYRRA
Ga0209275_103483941	3300027884	Soil	MLALRYLLITCGLGMIFAAVCILTYDLYREMAYRRALET
Ga0209624_110506312	3300027895	Forest Soil	MLALKNLLMAGGLGMILVALGILSYDLYQELLYRRALAAPARLAH
Ga0209067_106222853	3300027898	Watersheds	MLALKYLLMAGGLGMILVAVSILGYDLYRELLYRRAVATSGTGTL
Ga0209067_106680421	3300027898	Watersheds	MLALKYLLISGGLGMILVAVSILAYDLYREMLYRR
Ga0209488_110615783	3300027903	Vadose Zone Soil	MLALKYLLITGGVGMMIVAVCILAFDLYREFLYRR
Ga0209006_101928761	3300027908	Forest Soil	MLALKDLLFAGGLGMILVAVSILLYDLYREVLYRRALAAPVGEGAV
Ga0209698_100899711	3300027911	Watersheds	MLALRYLLMSVGLGMILVAVSILAYDLFREWTYRRAL
Ga0265338_101389651	3300028800	Rhizosphere	MLALKYLLIAGVLGMILVAVSILGYDLYRELLYRRALATPGAGT
Ga0302226_101577833	3300028801	Palsa	MLALKYLLITGGLGMMIAAVCILTYDLYREMLYRRLLETP
Ga0302218_100786043	3300028863	Palsa	MLALKYLLMMGGLGMIFAAVSILTYDLYREMLYRRALETPGG
Ga0302278_102752641	3300028866	Bog	MLALKYLLMTGGLGMILAAVCILAYDLYREMLYRRAMEAPGGAPA
Ga0308309_112123661	3300028906	Soil	MLALKYLLIAGGLGMILVAVSILGYDVYRELLYRRALASPG
Ga0308309_116451402	3300028906	Soil	MLALKYLLITCGLGMIIAAVCILTYDLYRELLYRRALETPRGA
Ga0311327_105002063	3300029883	Bog	MVALKYLLITGGLGMIFEAVCILTYDLYRELLYRRLLETPGGAET
Ga0311359_108512553	3300029914	Bog	MVALKYLLITGGLGMIFEAVCILTYDLYRELLYRRLL
Ga0311338_120001591	3300030007	Palsa	MLALKYLLITCGVGMMIAAVCILTYDLYREMLYRRT
Ga0075384_114952133	3300030841	Soil	MLALKYLLIAGGLGMILVAVSILGYDLYRELMYRRA
Ga0265765_10501722	3300030879	Soil	MLALKYLLITCGVAMMIAALCILTYDLYREMLYRRLLET
Ga0302324_1016088311	3300031236	Palsa	MLALKYLLISCGLGMILAAVILLAYDFYRELLYRRA
Ga0302320_115102212	3300031524	Bog	MLALKFLLMMGGLGMIFAAVGILTYDLYREMLYRRAQETPGGA
Ga0310915_112403921	3300031573	Soil	MLALKYLLMIGGFGMILAAIGILGYDLYAETLYRRALATPGAAMPPE
Ga0307476_105023661	3300031715	Hardwood Forest Soil	MLALKYLLVSVGVGMMVVAVGILGYDLYREMVYRK
Ga0307476_105909923	3300031715	Hardwood Forest Soil	MLALRYLLITGGLGMILVAVGILGYDLYRELLYRRALATPGSTVPPLPQ
Ga0307469_124129081	3300031720	Hardwood Forest Soil	MLALRTLLMMVGVGMIAAAVFILTYDLYREIVYRRALAEPEG
Ga0307475_110219781	3300031754	Hardwood Forest Soil	MLALKYLLMTGGVAMMVAAVGILTYDLYREMSYRRTME
Ga0307478_101500441	3300031823	Hardwood Forest Soil	MLALKYLLMAGGFGMIIVAVCILAYDLYREVLYRRAS
Ga0307478_101521111	3300031823	Hardwood Forest Soil	MLALKYLLMCGGFGMILVAVGILGYDLYLEMLYRRALAAPGAALP
Ga0308175_1012442863	3300031938	Soil	MLVLRNLLMYGGFGMILVAVGILGYDLYLEVLYRKAL
Ga0310910_102340883	3300031946	Soil	MLALKYLLMCGGLGMILAALSILGYDSYRELLYRK
Ga0307479_110726691	3300031962	Hardwood Forest Soil	MLALKYLLITGGLGMILVAMSILGYDLYRELMYRRPLAAPGAGPVPAL
Ga0308176_121854511	3300031996	Soil	MLVLRNLLMYGGFGMILVAVGILGYDLYLEVLYRKALATPGVT
Ga0311301_109479993	3300032160	Peatlands Soil	MLALKYLLMAGGLGMILVAVSILGYDSYRELLYRRALAAPGG
Ga0311301_110780633	3300032160	Peatlands Soil	MLALRYLLIAGGLGMILVAVGILGYDLYRELLYRRALATPGADA
Ga0335078_118020972	3300032805	Soil	MLALRYLLISVGLGMILVAVSILGYDLYRELRHRRALAAPGAGPVPPLP
Ga0335080_108108483	3300032828	Soil	MLALRYLLMCGGLGMILVAVGILTIDGYREILYRKA
Ga0335077_104201163	3300033158	Soil	MLALKYLLIAGGLGMILVAVCILLYDLYREVLCRRALAAPAGEVVV
Ga0335077_107714013	3300033158	Soil	MLFVKHMLMMGGIGMILVAVGILTYDGILEMHYRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089286

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences