Metagenome / Metatranscriptome Family F089263

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089263
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	60 residues
Representative Sequence	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLA
Number of Associated Samples	91
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.20 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	93.58 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.972 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.275 % of family members)
Environment Ontology (ENVO)	Unclassified (31.193 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.541 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.68% β-sheet: 0.00% Coil/Unstructured: 56.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00441	Acyl-CoA_dh_1	28.44
PF02627	CMD	19.27
PF02771	Acyl-CoA_dh_N	8.26
PF02770	Acyl-CoA_dh_M	3.67
PF13676	TIR_2	1.83
PF01019	G_glu_transpept	1.83
PF00854	PTR2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	40.37
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	19.27
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	19.27
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.83
COG3104	Dipeptide/tripeptide permease	Amino acid transport and metabolism [E]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.54 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.12 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	28.44 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.50 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_113996692	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300001867\|JGI12627J18819_10028674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2297	Open in IMG/M
3300002906\|JGI25614J43888_10114131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	704	Open in IMG/M
3300004629\|Ga0008092_10495981	Not Available	517	Open in IMG/M
3300005167\|Ga0066672_10475127	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300005332\|Ga0066388_105819108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300005332\|Ga0066388_107576752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300005332\|Ga0066388_108756867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300005363\|Ga0008090_10066748	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300005406\|Ga0070703_10076471	Not Available	1130	Open in IMG/M
3300005564\|Ga0070664_101713783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300005764\|Ga0066903_101060320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1489	Open in IMG/M
3300005764\|Ga0066903_103582775	Not Available	836	Open in IMG/M
3300006038\|Ga0075365_10203114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1388	Open in IMG/M
3300006038\|Ga0075365_10969715	Not Available	599	Open in IMG/M
3300006058\|Ga0075432_10110238	Not Available	1025	Open in IMG/M
3300006175\|Ga0070712_100726208	Not Available	848	Open in IMG/M
3300006755\|Ga0079222_11324483	Not Available	659	Open in IMG/M
3300006800\|Ga0066660_10506560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1014	Open in IMG/M
3300006844\|Ga0075428_100682561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1094	Open in IMG/M
3300006852\|Ga0075433_11687679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300006880\|Ga0075429_100365261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1264	Open in IMG/M
3300009012\|Ga0066710_102548564	Not Available	738	Open in IMG/M
3300009038\|Ga0099829_10130609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1988	Open in IMG/M
3300009090\|Ga0099827_11659164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	557	Open in IMG/M
3300009143\|Ga0099792_10270690	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300009147\|Ga0114129_13043530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300009792\|Ga0126374_11095242	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300010043\|Ga0126380_10293774	Not Available	1152	Open in IMG/M
3300010043\|Ga0126380_10458756	Not Available	965	Open in IMG/M
3300010047\|Ga0126382_10652241	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300010048\|Ga0126373_10884853	Not Available	957	Open in IMG/M
3300010048\|Ga0126373_12243220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300010358\|Ga0126370_10551009	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300010359\|Ga0126376_11445453	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300010361\|Ga0126378_10474967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1365	Open in IMG/M
3300010361\|Ga0126378_11366959	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300010361\|Ga0126378_13424455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300010366\|Ga0126379_10565589	All Organisms → cellular organisms → Bacteria → Proteobacteria	1218	Open in IMG/M
3300010366\|Ga0126379_11184124	Not Available	870	Open in IMG/M
3300010366\|Ga0126379_12882652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300010366\|Ga0126379_13077021	Not Available	558	Open in IMG/M
3300010376\|Ga0126381_102539523	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300010398\|Ga0126383_11905416	Not Available	682	Open in IMG/M
3300010398\|Ga0126383_12806703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300010398\|Ga0126383_13350826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300012189\|Ga0137388_10484560	Not Available	1148	Open in IMG/M
3300012205\|Ga0137362_10124188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2191	Open in IMG/M
3300012211\|Ga0137377_10515793	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300012924\|Ga0137413_10336138	Not Available	1067	Open in IMG/M
3300012929\|Ga0137404_11538423	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300012971\|Ga0126369_12049997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300012971\|Ga0126369_12879748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300012985\|Ga0164308_11958932	Not Available	546	Open in IMG/M
3300016270\|Ga0182036_11005119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300016294\|Ga0182041_12283366	Not Available	506	Open in IMG/M
3300016319\|Ga0182033_11399877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300016357\|Ga0182032_11902847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300016371\|Ga0182034_10228419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1456	Open in IMG/M
3300018431\|Ga0066655_11398394	Not Available	508	Open in IMG/M
3300020000\|Ga0193692_1060012	Not Available	853	Open in IMG/M
3300021168\|Ga0210406_11114308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	580	Open in IMG/M
3300021953\|Ga0213880_10196200	Not Available	566	Open in IMG/M
3300022883\|Ga0247786_1024791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1148	Open in IMG/M
3300023263\|Ga0247800_1045170	Not Available	791	Open in IMG/M
3300025915\|Ga0207693_10198869	All Organisms → cellular organisms → Bacteria → Proteobacteria	1576	Open in IMG/M
3300026313\|Ga0209761_1166418	Not Available	1022	Open in IMG/M
3300026340\|Ga0257162_1032436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300026359\|Ga0257163_1060240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300026507\|Ga0257165_1026192	Not Available	1004	Open in IMG/M
3300027480\|Ga0208993_1045217	Not Available	791	Open in IMG/M
3300027846\|Ga0209180_10787920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300027907\|Ga0207428_10411444	Not Available	989	Open in IMG/M
3300028715\|Ga0307313_10031760	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300028721\|Ga0307315_10080468	Not Available	940	Open in IMG/M
3300028768\|Ga0307280_10249166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300028802\|Ga0307503_10469078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300031543\|Ga0318516_10286308	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300031543\|Ga0318516_10487153	Not Available	708	Open in IMG/M
3300031561\|Ga0318528_10743460	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031564\|Ga0318573_10030338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2525	Open in IMG/M
3300031679\|Ga0318561_10721292	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031679\|Ga0318561_10747062	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300031748\|Ga0318492_10745943	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031751\|Ga0318494_10756227	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031763\|Ga0318537_10272804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300031765\|Ga0318554_10024049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3215	Open in IMG/M
3300031765\|Ga0318554_10088061	Not Available	1737	Open in IMG/M
3300031777\|Ga0318543_10027819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2173	Open in IMG/M
3300031781\|Ga0318547_10738005	Not Available	613	Open in IMG/M
3300031782\|Ga0318552_10711269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300031819\|Ga0318568_10151266	Not Available	1418	Open in IMG/M
3300031821\|Ga0318567_10102690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1549	Open in IMG/M
3300031832\|Ga0318499_10423271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031833\|Ga0310917_11031707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300031833\|Ga0310917_11085628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031835\|Ga0318517_10506788	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300031896\|Ga0318551_10059401	Not Available	1951	Open in IMG/M
3300031941\|Ga0310912_11366848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300031946\|Ga0310910_11453846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300032009\|Ga0318563_10170878	Not Available	1169	Open in IMG/M
3300032054\|Ga0318570_10074997	Not Available	1445	Open in IMG/M
3300032059\|Ga0318533_11342123	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300032066\|Ga0318514_10691625	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300032089\|Ga0318525_10611858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300032090\|Ga0318518_10206262	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300032180\|Ga0307471_100458186	All Organisms → cellular organisms → Bacteria → Proteobacteria	1416	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.91%
Host-Associated	Host-Associated	10.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.91%
Plants	Host-Associated → Plants	10.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.34%
Roots	Host-Associated → Plants → Roots	1.83%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.82%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.42%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.83%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1139966921	3300000956	Soil	MAAADLPGTNEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPEDL
JGI12627J18819_100286741	3300001867	Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVTALFAYAVPEDLMRYDPRQLAELAANAWSLLAVRKP
JGI25614J43888_101141312	3300002906	Grasslands Soil	MAAADLPGTDEERAEAALIAAAGKILRSGNRDVPEDFVVALFAHVVPEDLMRYDPRQLAELAADAW
Ga0008092_104959812	3300004629	Tropical Rainforest Soil	MTSARRAKENLVAAADVVGDDEARAAAALIAAAGNLLRQENREVPADFIAGLFARAVPEDLMRYAARELA
Ga0066672_104751272	3300005167	Soil	MAAADLPGSDEERAEAALIAAAGKILRSDNREVPEDFVAALFAHAVPE
Ga0066388_1058191081	3300005332	Tropical Forest Soil	MAAADRPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSLLAVR
Ga0066388_1075767521	3300005332	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAYAVPEDLMRYDPRQLAELAAN
Ga0066388_1087568672	3300005332	Tropical Forest Soil	VRVHAEESAMAAADLPGSDEERAEAALISAAAHILRETNREVPDEFITGLFAYAVPEDLMRYDPRQLAE
Ga0008090_100667482	3300005363	Tropical Rainforest Soil	MAAANLPGTDEERAEAALIAAAGNILRGENRKVPEDFVAALFAYAVPEDLMRYDPRQLAELAAN
Ga0070703_100764712	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MAVADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQ
Ga0070664_1017137831	3300005564	Corn Rhizosphere	MVAADLPGTDEERAEAALIAAAGKILRGSHCEIPADFVAGIFAHAAPEDLLRYDP
Ga0066903_1010603202	3300005764	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSLLA
Ga0066903_1035827752	3300005764	Tropical Forest Soil	MRPTEGPGNAVADFVGNDEERAEAALIAAAGKILGGERPEVPADFVAALFSYAEPEDL
Ga0075365_102031145	3300006038	Populus Endosphere	MPAADLPGTDEERAEAALIAAAAKILHNGDQKVPEDFIAGLFAHEEPEDLLRYDPRQLAELAAD
Ga0075365_109697152	3300006038	Populus Endosphere	MAAADLPGSDEERAEAALIAAAGKILRSDNREVPEDFVAALFAHAVPEDLL
Ga0075432_101102382	3300006058	Populus Rhizosphere	MATAPDRAGSDEEHAGQALIAAAGKILASENRGVPEDFIAGLFAYAAPEDLMRYDPRQLARVVAHQ
Ga0070712_1007262082	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAAADLPGSDEERAEAALIAAAGKILRSDNREVPEDFVAALFAHAVPEDLLRYDPR
Ga0079222_113244831	3300006755	Agricultural Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFLAALFAHAVPED
Ga0066660_105065602	3300006800	Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSLLAVRK
Ga0075428_1006825611	3300006844	Populus Rhizosphere	MATADLPGTDEERAEAALIAAAAKILHNGNREVPDDFIAGLFAYAEPEDLMRYDPRQLAELAADAWSLLAVRK
Ga0075433_116876791	3300006852	Populus Rhizosphere	MAAADLPGSDEERAEAALIAAAGKILRSDNREVPEDFVAALFAHAVPEDLLRYDP
Ga0075429_1003652611	3300006880	Populus Rhizosphere	MAAADLPGSDEQRAEAALIAAAGKILRSSHREVPEDFVAALFAHAVPEDLMRYDPRQLADLAADAW
Ga0066710_1025485641	3300009012	Grasslands Soil	MTADDLPGTDEERAEAALIAAAANILGSGNRDVPEDFVVALFAHAVPEDLM
Ga0099829_101306093	3300009038	Vadose Zone Soil	MAAADLPGTDEERAEQALIAAAGKILRSENREIPEDFIAGLFARAVPEDLM
Ga0099827_116591641	3300009090	Vadose Zone Soil	MADQPGTDEERAEAALIAAAGKILDHDHRGVAADFVAGLFARAVPEDLMRYGPREVATLAADAWALMSVRQPGAPRMRFASPAAS
Ga0105247_102816181	3300009101	Switchgrass Rhizosphere	MTVAVLSASDEDRAEQALLAAAAKILASEERGVPDDFVAALFAHAEPEDLMRYGAREVAELAADAWAL
Ga0099792_102706901	3300009143	Vadose Zone Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDP
Ga0114129_130435301	3300009147	Populus Rhizosphere	MATAPDRAGSDEEHAGQALIAAAGKILASENRGVPEDFIAGLFAYAAPEDLMRYDPRQLAGLAADAWAHI
Ga0126374_110952422	3300009792	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAHAVPEDLMRYDPRQLAE
Ga0126380_102937741	3300010043	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSLL
Ga0126380_104587561	3300010043	Tropical Forest Soil	MAAADIPGSDEERAEAALIAAAGKILRGDNREVPEDFIAALFAHAVPEDLMRYDPRQLA
Ga0126382_106522411	3300010047	Tropical Forest Soil	MGAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRY
Ga0126373_108848531	3300010048	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWS
Ga0126373_122432202	3300010048	Tropical Forest Soil	MAAANLPGTDEERAEAALIAAAGNILRGENRKVPEDFVTALFAYAVPEDLMRYDPRQLA
Ga0126370_105510092	3300010358	Tropical Forest Soil	MSAFYRNDTDEERAEAALVAAAGNILRGDVRGVPEDFITGLFAHAVPEDLMRY
Ga0126376_114454531	3300010359	Tropical Forest Soil	MAAADRPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPED
Ga0126378_104749671	3300010361	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAYAVPEDLMRYDPRQLAQ
Ga0126378_113669591	3300010361	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRRDNREVPEDFIAALFAYAVPEDLMRYDPRQLA
Ga0126378_134244551	3300010361	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAE
Ga0126379_105655891	3300010366	Tropical Forest Soil	VADFVGNDEERAEAALIAAAGKILGGERPEVPADFVAALFSYAEPEDLLRYDPRQVAELA
Ga0126379_111841242	3300010366	Tropical Forest Soil	MAAANLPGTDEERAEAALIAAAGNILRGENRKVPEDFVAALFAYAVPEDLMRYDPR
Ga0126379_128826522	3300010366	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAYAVPEDLMRYDPRQLAELAANA
Ga0126379_130770211	3300010366	Tropical Forest Soil	MPAADLPGTDEERAEAALIAAAAKILHNGDQQVPDDFISGLFAHAEPEDLMRHDPRQLAE
Ga0126381_1025395232	3300010376	Tropical Forest Soil	MAAADRPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPEDLMRYDPRQLA
Ga0126383_119054162	3300010398	Tropical Forest Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAIPEDLMRYDPRQLAELAANAWSLLAVRK
Ga0126383_128067031	3300010398	Tropical Forest Soil	MAAADRPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSLLAV
Ga0126383_133508261	3300010398	Tropical Forest Soil	MAAAELARTDEERAEAALIAAAGKILEQEHRGIPPDFVAGLFARAVPEDLMRYGPREVATLAADAWALM
Ga0137388_104845601	3300012189	Vadose Zone Soil	MAAADLPGTDEERAEQALIAAAGKILRSENRAIPEDFIAGLFARAVPEDL
Ga0137362_101241883	3300012205	Vadose Zone Soil	MAAADLPGTDEERAEAALIAAAGNILHRDNREVPEDFIAALFADAVPDDLMRYD
Ga0137377_105157931	3300012211	Vadose Zone Soil	MAAADLPGTDEERAEAALIAAAGKILQSGNRDVPEDFVVALFAHVVPEDLMRYDP
Ga0137413_103361382	3300012924	Vadose Zone Soil	MATAVLSGTDEERAEQALIAAAAAILIDEARGVPAHFVMGLFAHAVPDD
Ga0137404_115384231	3300012929	Vadose Zone Soil	MAAADLPGSDEERAEAALIAAAGKILSSGHREVPEDFVAALFAHAVPEDLMRYDPRQLAELAAD
Ga0126369_120499972	3300012971	Tropical Forest Soil	MRPTEGPGNAVADFVGNDEERAEAALIAAAGKILGGERPEVPADFVAALFSYAEPEDLLRYDPRQVAELAAD
Ga0126369_128797481	3300012971	Tropical Forest Soil	MAAANLPGTDEERAEAALIAAAGNILRGENRKVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSLLAV
Ga0164308_119589322	3300012985	Soil	MVAADLPGTDEERAEAALIAAASKILRGSHREIPADFVAGIFAHAAPEDL
Ga0132257_1020744751	3300015373	Arabidopsis Rhizosphere	MTAAVLSASDEDRAEQALLAAAAKILASEERSVPDDFVAALFAHAEPEDLMRYTAREVAELA
Ga0182036_110051192	3300016270	Soil	MAAADLPRTDEERAEAALIAAAGNILRSGNREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSLLAVR
Ga0182041_122833661	3300016294	Soil	MAAANPPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAE
Ga0182033_113998771	3300016319	Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANARSLLAV
Ga0182032_119028471	3300016357	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAHAVPEDLMRYDPRQLAELAANAW
Ga0182034_102284191	3300016371	Soil	MAAADIPGSDEERAEAALIAAAGKILRGDNREVPEDFIAALFAHAVPEDLMRYDPRQL
Ga0066655_113983941	3300018431	Grasslands Soil	MSAADPTGNDEARGEAALIAAAGNLLRQENREVPADFIAGLFARAVPEDLM
Ga0193692_10600121	3300020000	Soil	MVAADLPGTDEERAEAALIAAAAKILRAGHREIPEDFVAGIFAHAAPEDLLRY
Ga0210406_111143082	3300021168	Soil	MAAADLPGTDEERGEAALIAAAGKILRSGNRDVPEDFVVALFAHVVPEDLMRYDPRQLA
Ga0213880_101962002	3300021953	Exposed Rock	MAAADLPGSDEERAEAALIAAAGKILHSDNREVPKDFVAALFDHAVPEDLLRYDPR
Ga0247786_10247911	3300022883	Soil	MAAADLPGSDEELAEAALIAAAGQLLGDSHREIPADFVAEIFAHAVPEDL
Ga0247800_10451702	3300023263	Soil	MVAADLPGTDEERAEAALIAAAGKILNGSHHEIPADFVAGIFAHAAPEDLLRYD
Ga0207693_101988693	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSTVDRSGIDEERAEAALIAAAVDVLRSTHREVPADFLTGLFAYALPEDLLGYDPRQLAELA
Ga0209761_11664182	3300026313	Grasslands Soil	MAAADLPGSDEERAEAALIAAAGKILRSGHREVPEDFVAALFAHAVPEDLMRYDP
Ga0257162_10324361	3300026340	Soil	MAAADLPGTDEERGEAALIAAAGKILRSGNRDVPEDFVVALFAHVVPEDLMRYDPRQLAELAADAWAMLAVRKP
Ga0257163_10602401	3300026359	Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLA
Ga0257165_10261922	3300026507	Soil	MAAADLPGADEERAEAALIAAAGKILRSGNRDVPEDFVVALFAHVVPEDLMRYDPRQLAELAADAWA
Ga0208993_10452171	3300027480	Forest Soil	MAAAAFSGTDEERAEQALIAAAAKILSSENRGVPEDFVAGLFAYAVPEDLMRYGARELAEVAADAWALLSVREPGT
Ga0209180_107879202	3300027846	Vadose Zone Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMR
Ga0207428_104114442	3300027907	Populus Rhizosphere	MATAPDRAGSDEEHAGQALIAAAGKILASENRGVPEDFIAGLFAYAAPEDLMRYDPRQLARVVAHQIF
Ga0307313_100317603	3300028715	Soil	MVAADLPGTDEERAEAALIAAAGKILRAGHREVPEDFIAGIFAHAAPEDLLRYDP
Ga0307315_100804682	3300028721	Soil	MVAADLPGTDEERAEAALIAAAGKILRAGHREVPEDFIAGIFAHAAPEDLLRYDPRQ
Ga0307280_102491662	3300028768	Soil	MVAADLPGTDEERAEAALIAAAGKILRAGHREVPEDFIAGIFAHAAPEDLLRYDQRQLAE
Ga0307503_104690782	3300028802	Soil	VKLAALVWREGNARAELSGKDKERAEAALIAAAGKILASEKREIPADFIAAVFAYAVPEDLMRYDPRHLAGLAEDAWSFLEMRK
Ga0318516_102863082	3300031543	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAW
Ga0318516_104871531	3300031543	Soil	MAAADIPGSDEERAEAALIAAAGKILRGDNREVPEDFIAALFAHAIPE
Ga0318528_107434601	3300031561	Soil	MAAADLPRTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPED
Ga0318573_100303381	3300031564	Soil	MAAADRPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPE
Ga0318561_107212921	3300031679	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAHAVPEDLMRYD
Ga0318561_107470622	3300031679	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPE
Ga0318492_107459432	3300031748	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAHAVPE
Ga0318494_107562271	3300031751	Soil	MAAADLPGTDEERAEAALIAAAGNILHSDNREVPEDFIAALFAHAVPEDLMRYDPRQLA
Ga0318537_102728042	3300031763	Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAW
Ga0318554_100240493	3300031765	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAHAVPEDLMRYDPRQLAELAANAWSLFAVRK
Ga0318554_100880612	3300031765	Soil	MAAADRPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPED
Ga0318543_100278193	3300031777	Soil	MAAADLPRTDEERAEAALIAAAGNILRSGNREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSL
Ga0318547_107380052	3300031781	Soil	MAAADIPGSDEERAEAALIAAAGKILRGDNREVPEDFIAALFAHAVPEDLMR
Ga0318552_107112691	3300031782	Soil	MAAAELPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMHYDPC
Ga0318568_101512662	3300031819	Soil	MAAADLPRTDEERAEAALIAAAGNILRSGNREVPEDFVAALFAYAVPEDLMRYDPRQL
Ga0318567_101026901	3300031821	Soil	MAAADIPGSDEERAEAALIAAAGKILRGDNREVPEDFIAALFAHAVPEDLMRYDPRQLADLAADAWSLLAVR
Ga0318499_104232711	3300031832	Soil	MAAAELPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMHYD
Ga0310917_110317071	3300031833	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSL
Ga0310917_110856281	3300031833	Soil	MAAAELPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMHYDPRQLAELAANA
Ga0318517_105067881	3300031835	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPED
Ga0318551_100594011	3300031896	Soil	MAAADLPGTDEERAEAALIAAAGNILHSDNREVPEDFIAALFAHAVPEDLMRYD
Ga0310912_113668481	3300031941	Soil	MAAADRPGTDEERAEAALIAAAGNVLRSDNREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAW
Ga0310910_114538462	3300031946	Soil	MAAADRPGTDEERAEAALIAAAGNILRSDNREVPEDFVAALFAYAVPEDLMRYDPRQLAE
Ga0318563_101708782	3300032009	Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAELAA
Ga0318570_100749972	3300032054	Soil	MAAADRPGTDEERAEAALIAAAGNVLRSDNREVPEDFVAALFAYAVPEDLMRYDPRQLAELAANAWSLLAVRKP
Ga0318533_113421232	3300032059	Soil	MAAADLPGTDEERAEAALIAAAGNILRSDNREVPEDFIAALFAHAVPEDLMRYDP
Ga0318514_106916252	3300032066	Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLM
Ga0318525_106118582	3300032089	Soil	MAAADLPGTDEERAEAALIAAAGNILRSENREVPEDFVAALFAYAVPEDLMRYDPRQLAELAAN
Ga0318518_102062621	3300032090	Soil	MAAADLPGTDEERAEAALIAAAGNILHSDNREVPEDFIAALFAHAVPEDLMRYDP
Ga0307471_1004581863	3300032180	Hardwood Forest Soil	MAAADLPGTDEERGEAALIAAAGKILRSGNRDVPEDFVVALFAHVVPEDLMRYDPRQLAELAADAWAMLAVRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089263

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences