Metagenome / Metatranscriptome Family F089259

Basic Information
Family ID	F089259
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	40 residues
Representative Sequence	RATTAVLSVGATCMFFLQQVDDRDKLRAIVLEMATDLIN
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.83 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	86.24 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Bacteria (55.963 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.523 % of family members)
Environment Ontology (ENVO)	Unclassified (19.266 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.376 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.75% β-sheet: 0.00% Coil/Unstructured: 49.25%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13424	TPR_12	29.36
PF01037	AsnC_trans_reg	5.50
PF13412	HTH_24	5.50
PF00248	Aldo_ket_red	4.59
PF01670	Glyco_hydro_12	3.67
PF13374	TPR_10	3.67
PF03023	MurJ	2.75
PF13229	Beta_helix	2.75
PF00196	GerE	1.83
PF00723	Glyco_hydro_15	1.83
PF00291	PALP	0.92
PF13480	Acetyltransf_6	0.92
PF00498	FHA	0.92
PF13613	HTH_Tnp_4	0.92
PF13581	HATPase_c_2	0.92
PF00535	Glycos_transf_2	0.92
PF00903	Glyoxalase	0.92
PF13578	Methyltransf_24	0.92
PF13432	TPR_16	0.92
PF04149	DUF397	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	2.75
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	2.75
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	2.75
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	1.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.96 %
Unclassified	root	N/A	44.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.96 %
Unclassified	root	N/A	44.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.96 %
Unclassified	root	N/A	44.04 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	45.87 %
Unclassified	root	N/A	44.04 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.87 %
Unclassified	root	N/A	44.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.04 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.04 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	9.17 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	5.50 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.83 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.83 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.92 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.92 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.92 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.04 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	5.50 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.59 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.92 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.92 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.92 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples	0.92 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.92 %
Gordoniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.04 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	5.50 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.59 %
Tetrasphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera	1.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.83 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.92 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	0.92 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.92 %
Gordonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.04 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	5.50 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.59 %
unclassified Tetrasphaera	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → unclassified Tetrasphaera	1.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.83 %
unclassified Kribbella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella	0.92 %
Geodermatophilus pulveris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus pulveris	0.92 %
Gordonia rhizosphera	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia → Gordonia rhizosphera	0.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.92 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.04 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	5.50 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.59 %
Tetrasphaera sp. HKS02	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → unclassified Tetrasphaera → Tetrasphaera sp. HKS02	1.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.83 %
Kribbella sp. VKM Ac-2575	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2575	0.92 %
Geodermatophilus pulveris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus pulveris	0.92 %
Gordonia rhizosphera	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia → Gordonia rhizosphera	0.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.92 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_103228605	Not Available	1018	Open in IMG/M
3300000956\|JGI10216J12902_109711478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → unclassified Tetrasphaera → Tetrasphaera sp. HKS02	1003	Open in IMG/M
3300003505\|JGIcombinedJ51221_10125656	Not Available	1030	Open in IMG/M
3300004479\|Ga0062595_100499021	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300005614\|Ga0068856_101983344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	593	Open in IMG/M
3300005921\|Ga0070766_10377420	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300005983\|Ga0081540_1231957	Not Available	651	Open in IMG/M
3300006175\|Ga0070712_100791028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	813	Open in IMG/M
3300006176\|Ga0070765_101175724	Not Available	724	Open in IMG/M
3300006176\|Ga0070765_101995419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300006804\|Ga0079221_10076592	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300009089\|Ga0099828_10822492	Not Available	831	Open in IMG/M
3300009090\|Ga0099827_10974749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300009143\|Ga0099792_10835626	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300009522\|Ga0116218_1271485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	761	Open in IMG/M
3300009672\|Ga0116215_1000609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26765	Open in IMG/M
3300010375\|Ga0105239_12930919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300010379\|Ga0136449_101167252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1217	Open in IMG/M
3300010876\|Ga0126361_11244744	Not Available	795	Open in IMG/M
3300012189\|Ga0137388_10708828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	934	Open in IMG/M
3300012202\|Ga0137363_11075040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	684	Open in IMG/M
3300012211\|Ga0137377_10362431	Not Available	1387	Open in IMG/M
3300012357\|Ga0137384_11510214	Not Available	521	Open in IMG/M
3300012960\|Ga0164301_11686721	Not Available	529	Open in IMG/M
3300013297\|Ga0157378_11459349	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300013297\|Ga0157378_12735139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546	Open in IMG/M
3300016341\|Ga0182035_11924227	Not Available	537	Open in IMG/M
3300016387\|Ga0182040_11140110	Not Available	654	Open in IMG/M
3300016404\|Ga0182037_10511959	Not Available	1008	Open in IMG/M
3300017821\|Ga0187812_1080033	Not Available	1078	Open in IMG/M
3300017948\|Ga0187847_10841749	Not Available	521	Open in IMG/M
3300017970\|Ga0187783_10442690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	943	Open in IMG/M
3300017973\|Ga0187780_10044974	All Organisms → cellular organisms → Bacteria	3077	Open in IMG/M
3300018001\|Ga0187815_10019220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2941	Open in IMG/M
3300018007\|Ga0187805_10014527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3364	Open in IMG/M
3300018043\|Ga0187887_10104317	Not Available	1707	Open in IMG/M
3300018058\|Ga0187766_10766125	Not Available	671	Open in IMG/M
3300019284\|Ga0187797_1321432	Not Available	621	Open in IMG/M
3300020581\|Ga0210399_10165239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus pulveris	1834	Open in IMG/M
3300020581\|Ga0210399_10936974	Not Available	701	Open in IMG/M
3300020581\|Ga0210399_11315405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300020582\|Ga0210395_10455393	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300020582\|Ga0210395_10613094	Not Available	816	Open in IMG/M
3300021178\|Ga0210408_10002685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	17038	Open in IMG/M
3300021178\|Ga0210408_10989307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	651	Open in IMG/M
3300021377\|Ga0213874_10296340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	608	Open in IMG/M
3300021388\|Ga0213875_10062324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1744	Open in IMG/M
3300021403\|Ga0210397_10031798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3297	Open in IMG/M
3300021403\|Ga0210397_10183479	Not Available	1485	Open in IMG/M
3300021406\|Ga0210386_10023625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4800	Open in IMG/M
3300021407\|Ga0210383_10355040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1263	Open in IMG/M
3300021477\|Ga0210398_11521846	Not Available	520	Open in IMG/M
3300021560\|Ga0126371_13706834	Not Available	515	Open in IMG/M
3300022530\|Ga0242658_1189707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300022531\|Ga0242660_1160431	Not Available	595	Open in IMG/M
3300022532\|Ga0242655_10132974	Not Available	714	Open in IMG/M
3300022724\|Ga0242665_10138492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → unclassified Tetrasphaera → Tetrasphaera sp. HKS02	759	Open in IMG/M
3300024271\|Ga0224564_1138789	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300025898\|Ga0207692_10023200	All Organisms → cellular organisms → Bacteria	2867	Open in IMG/M
3300025898\|Ga0207692_10024389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2812	Open in IMG/M
3300025900\|Ga0207710_10043658	Not Available	1995	Open in IMG/M
3300025911\|Ga0207654_10163784	Not Available	1439	Open in IMG/M
3300025916\|Ga0207663_10016262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4121	Open in IMG/M
3300025916\|Ga0207663_10048428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2631	Open in IMG/M
3300026078\|Ga0207702_12059263	Not Available	561	Open in IMG/M
3300027096\|Ga0208099_1050544	Not Available	593	Open in IMG/M
3300027504\|Ga0209114_1046488	Not Available	756	Open in IMG/M
3300027765\|Ga0209073_10303617	Not Available	633	Open in IMG/M
3300027765\|Ga0209073_10505312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	510	Open in IMG/M
3300027768\|Ga0209772_10258281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300027855\|Ga0209693_10298502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	785	Open in IMG/M
3300028789\|Ga0302232_10505593	Not Available	594	Open in IMG/M
3300028799\|Ga0307284_10204524	Not Available	777	Open in IMG/M
3300028863\|Ga0302218_10162589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	709	Open in IMG/M
3300028877\|Ga0302235_10449333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	549	Open in IMG/M
3300028906\|Ga0308309_10351225	Not Available	1257	Open in IMG/M
3300030053\|Ga0302177_10156979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1277	Open in IMG/M
3300030494\|Ga0310037_10141937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1094	Open in IMG/M
3300030740\|Ga0265460_12298624	Not Available	569	Open in IMG/M
3300030906\|Ga0302314_11274136	Not Available	682	Open in IMG/M
3300031040\|Ga0265754_1043772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300031236\|Ga0302324_100336632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia → Gordonia rhizosphera	2289	Open in IMG/M
3300031525\|Ga0302326_11202643	Not Available	1042	Open in IMG/M
3300031573\|Ga0310915_11158850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	536	Open in IMG/M
3300031681\|Ga0318572_10574518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	672	Open in IMG/M
3300031708\|Ga0310686_103148279	Not Available	727	Open in IMG/M
3300031708\|Ga0310686_111744721	Not Available	1381	Open in IMG/M
3300031708\|Ga0310686_115417773	Not Available	1145	Open in IMG/M
3300031769\|Ga0318526_10493716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300031781\|Ga0318547_10596494	Not Available	685	Open in IMG/M
3300031832\|Ga0318499_10020093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2312	Open in IMG/M
3300031890\|Ga0306925_11956468	Not Available	555	Open in IMG/M
3300031897\|Ga0318520_10098218	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300031910\|Ga0306923_10783969	Not Available	1054	Open in IMG/M
3300031941\|Ga0310912_11202506	Not Available	577	Open in IMG/M
3300031946\|Ga0310910_11196418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	590	Open in IMG/M
3300032008\|Ga0318562_10364580	Not Available	840	Open in IMG/M
3300032043\|Ga0318556_10614996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	566	Open in IMG/M
3300032044\|Ga0318558_10711230	Not Available	502	Open in IMG/M
3300032066\|Ga0318514_10578607	Not Available	598	Open in IMG/M
3300032160\|Ga0311301_10084486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6450	Open in IMG/M
3300032205\|Ga0307472_100956541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	798	Open in IMG/M
3300032770\|Ga0335085_11359901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300032805\|Ga0335078_11743400	Not Available	681	Open in IMG/M
3300032829\|Ga0335070_11485111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	618	Open in IMG/M
3300032895\|Ga0335074_10491275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1279	Open in IMG/M
3300032897\|Ga0335071_10097473	All Organisms → cellular organisms → Bacteria	2884	Open in IMG/M
3300033290\|Ga0318519_10322322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2575	908	Open in IMG/M
3300033806\|Ga0314865_088717	Not Available	808	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.83%
Host-Associated	Host-Associated	9.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.32%
Plants	Host-Associated → Plants	9.17%
Aquatic	Environmental → Aquatic	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.90%
Peat	Environmental → Terrestrial → Peat	6.42%
Freshwater	Environmental → Aquatic → Freshwater	5.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Roots	Host-Associated → Plants → Roots	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.80%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.34%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.59%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.42%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.42%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027504	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089259

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1032286051	3300000956	Soil	RATTAVLSVGATCMFFLQQVDDRDKLRAIVLEMATDLIN*
JGI10216J12902_1097114781	3300000956	Soil	AVLSVGATCMFFLQEVDDRDKLRAIVLEMATDLIS*
JGIcombinedJ51221_101256561	3300003505	Forest Soil	APLRDRVRTSAAVLSVSATCLFYLQQVDDPDKLRAIVLEMATDLLH*
Ga0062595_1004990211	3300004479	Soil	RATTAVLSVGATCMFFLHEVDDRDKLRAIVLEMATDLIPVAR*
Ga0068856_1019833443	3300005614	Corn Rhizosphere	RVRATTAVLSVGATCMFFLDQVDDRDKLRAIVLEMATDLIG*
Ga0070766_103774202	3300005921	Soil	APLRDRVRATTATLAVGATCHFYLQQVDDPDKLRAIVLEIALDLIH*
Ga0081540_12319571	3300005983	Tabebuia Heterophylla Rhizosphere	AVLSVGATCMFFLQQVDDRDKLRAIVLEMATDLIPLTR*
Ga0070712_1007910281	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TTAVLSVGATCMFFLQEVDDRDKLRAIVLEMATDLIS*
Ga0070765_1011757241	3300006176	Soil	RERVRATAALLSVGATCHVYLQQAEDPDKLRAIITEIATDLIR*
Ga0070765_1019954191	3300006176	Soil	RDRVRATAAMLSVGAACHVYLQQVDDPDKLRAIILEIATDLIH*
Ga0079221_100765921	3300006804	Agricultural Soil	RVRATAAIMSVGATCIFFLQQVDDRDKLRAIVLEMATDLIG*
Ga0099828_108224923	3300009089	Vadose Zone Soil	AATAVLAVGGTCMVFLQQVDDPDKLRAIVLEMATDLTR*
Ga0099827_109747492	3300009090	Vadose Zone Soil	DRVRATAGVLTVGATCMFYLHQVDDRDKLRAIVLEIASDLTS*
Ga0099792_108356261	3300009143	Vadose Zone Soil	AVLSVGATCMFFVQEVDDRDKLRAIVLEMATDLIS*
Ga0116218_12714852	3300009522	Peatlands Soil	VLAVGATCVFYLQQVDDQDKLRAIVLEMATDLIQ*
Ga0116215_10006091	3300009672	Peatlands Soil	TTATLAVGATCMFFLQQVDDQDKLRAIVLEIATDLTS*
Ga0105239_129309191	3300010375	Corn Rhizosphere	APLRDRVRATTAVLSVGATCMFFLQQVDDREKLRAIVLEMATDLIG*
Ga0136449_1011672522	3300010379	Peatlands Soil	PLRERVRATTAVLAVGATCVFYLQQVDEVDKLRAIVLEMATDLIQ*
Ga0126361_112447441	3300010876	Boreal Forest Soil	LRERVRATAALLSVGATCHVYLQQAEDPDKLRAIITEIATDLIR*
Ga0137388_107088282	3300012189	Vadose Zone Soil	DRVRATAGVLTVGATCMFYLQQVDDRDKLRAIVLEIASDLTS*
Ga0137363_110750402	3300012202	Vadose Zone Soil	RATTAVLSIGATCMFFLQEMDERDKLRATVLEMATDLIS*
Ga0137377_103624312	3300012211	Vadose Zone Soil	AVLSVGATCMFFVQEVDDRDKLRDIVLEMATDLIS*
Ga0137384_115102143	3300012357	Vadose Zone Soil	VRATAAVLSVGATCMFYLHQVDDRDKLRAIVLEMATDLIPVIR*
Ga0164301_116867212	3300012960	Soil	ATTAVLSVGAPCIFFLQQVDDRKKLRAIVREMATDLIG*
Ga0157378_114593492	3300013297	Miscanthus Rhizosphere	VRATSAVLATGATCMFYLQQVDDPDKLRAIVLEIATDLIG*
Ga0157378_127351391	3300013297	Miscanthus Rhizosphere	TAVLSVGATCMFFLQEVDDRDKLRAIVLEMATDLIS*
Ga0182035_119242271	3300016341	Soil	TAVLAVGATCHVYLQQVDDPDKLRAIVLEIALDLIH
Ga0182040_111401102	3300016387	Soil	ATAAMLSVGATCHVYQQQVDDPDKLRAIVLEIANDLIR
Ga0182037_105119592	3300016404	Soil	APLRDRMRATAAVLSVGATCHFYLQQVDDPDKLRAIVLEIATDLIS
Ga0187812_10800331	3300017821	Freshwater Sediment	AVLTVGATCLFYLQQVDDPDKLRAVVLEIATDLIH
Ga0187847_108417491	3300017948	Peatland	RASTAVIAVGAACRFFLQRTDDRDKLRAIVLEIATDLTS
Ga0187783_104426902	3300017970	Tropical Peatland	TAAVLTVGAVCHFYLQQVDDPDKLRAIVMEIATDLIH
Ga0187780_100449743	3300017973	Tropical Peatland	LRDRVRATAAMLSVGATCHVYQQQVDDPDKLRAIVLEIATDLIR
Ga0187815_100192201	3300018001	Freshwater Sediment	ATTAVLTVGATCLFYLQQVDDPDKLRAVVLEIANDLVR
Ga0187805_100145273	3300018007	Freshwater Sediment	ATAAVVSVGSTYMFYLQQVDDQDKLGEIILELATDLTH
Ga0187887_101043171	3300018043	Peatland	APLRDRVRASTAVIAVGATCRFYLQQIEDRDELRAIVLEITNDLIS
Ga0187766_107661251	3300018058	Tropical Peatland	RASTAVLAVGATCHVYLQQADDPDKLRAIVLEIALDLIH
Ga0187797_13214321	3300019284	Peatland	AITAILAVGATYMFYMQQVDDPDKLGAIILEIATDLIH
Ga0210399_101652392	3300020581	Soil	RVRATAATLTVGATCHVYLQRVDDPDKLRAIILEIATDLIH
Ga0210399_109369743	3300020581	Soil	RDRVRATAAVLSVGAICMFFLQEVNDRDKLRAIVLEMATDLIG
Ga0210399_113154051	3300020581	Soil	RVRATTAVLSVGATCMFFLQEVNDRDKLRAIVLEMATDLIS
Ga0210395_104553931	3300020582	Soil	RVRATAATLTVGATCHVYLQQVDDPDKLRAVILEIATDLIH
Ga0210395_106130941	3300020582	Soil	VLAVGATCVFYVQQVDDRDKLRAIVLEMATDLIPVDRSY
Ga0210408_100026851	3300021178	Soil	DAPLRERVRATAATLTVGATCHVYLQKVDDPDKLRAIILEIATDLIH
Ga0210408_109893072	3300021178	Soil	ATLTVGATCHVYLQKVDDPDKLRAIILEIATDLIH
Ga0213874_102963401	3300021377	Plant Roots	TAVLSVGATCHVYLQQVDDLDKLRAIVLEIATDLIS
Ga0213875_100623241	3300021388	Plant Roots	TAVLSVGMTCMFFLEQVNDRDKLRAIVLEMATDLIS
Ga0210397_100317984	3300021403	Soil	LRERVRATAATLTVGATCHVYLQRVDDPDKLRAIILEIATDLIR
Ga0210397_101834792	3300021403	Soil	DRVRATTAVLSVGATCMFFLQEVNDRDKLRAIVLEMATDLIS
Ga0210386_100236254	3300021406	Soil	RATAATLTVGATCHVYLQKVDDPDKLRAIILEIATDLIH
Ga0210383_103550401	3300021407	Soil	AATLTVGATCHVYLQQVDDPDKLRAIILEIATDLIH
Ga0210398_115218462	3300021477	Soil	SAAVLSVSATCLFYLQQVDDPDKLRAIVLEMATDLLH
Ga0126371_137068341	3300021560	Tropical Forest Soil	QVRDRVRATAAVLTVGATCHFYLQQVDDPDKLRAIILEMATDLIG
Ga0242658_11897071	3300022530	Soil	VRATTAVLSVGATCMFFLQEVNDRDKLRAIVLEMAT
Ga0242660_11604311	3300022531	Soil	PLRERVRATAATLTVGATCHVYLQQVDDPDKLRAIILEIATDLIH
Ga0242655_101329742	3300022532	Soil	ATAATLTVGATCHVYLQQVDDPDKLRAITLEIATDLIH
Ga0242665_101384921	3300022724	Soil	AVLSVGATCMFFLQQVDDRDKLRAIVLEMATDLIS
Ga0224564_11387892	3300024271	Soil	PGAPLRERVRATAATLAVGATCHVYLQEVDDPDKLRAIILEIATDLIH
Ga0207692_100232003	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VRATSAVLATGATCMFYLQQVDDPDKLRAIVLEIATDLIG
Ga0207692_100243893	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VRATTAVLSLGATCHFYLQRVDDPDKLRAIVLEMAADLIG
Ga0207710_100436582	3300025900	Switchgrass Rhizosphere	TAVLSVGATCMFFLQEVDDRDKLRAIVLEMATDLIS
Ga0207654_101637842	3300025911	Corn Rhizosphere	RVRATTAVLSVGATCMFFLQEVDDRDKLRAIVLEMATDLIS
Ga0207663_100162626	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RATTAVLSVGATCIFFLQQVDDREKLRAIVLEMATDLIG
Ga0207663_100484282	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RVRATTAVLSAGATCMFFVQEVDDRDKLRAIVLEMATDLIS
Ga0207702_120592631	3300026078	Corn Rhizosphere	RDRVRATTAVLSVGATCMFFLDQVDDRDKLRAIVLEMATDLIG
Ga0208099_10505441	3300027096	Forest Soil	STAVIAVGATCRFFLQEIDDRDKLRAIVLEIATDLTS
Ga0209114_10464882	3300027504	Forest Soil	ERVRATTAVLSAGTSCMFFLEQIDDKDKLRAIVLELAEDLIG
Ga0209073_103036171	3300027765	Agricultural Soil	RATTAVISVGATCMFFLDQVDDRDKLRAIVLEMAADLTG
Ga0209073_105053121	3300027765	Agricultural Soil	ATTAVLSVGATCMFFLQEVDDRDKLRAIVLEMATDLIS
Ga0209772_102582811	3300027768	Bog Forest Soil	DRVRGTTAVLAVGATCMFFLQQVDDHDKLRAIVLEMATDLTG
Ga0209693_102985022	3300027855	Soil	RATAATLTVGATCHVYLQQVDDPDKLRAIILEIATDLIH
Ga0302232_105055932	3300028789	Palsa	DRVRASTALIAVGATCRFFLQQTEDRDKLRAIVREIATDLTS
Ga0307284_102045241	3300028799	Soil	RATTAVLSVGATCMFFLQEVDDRDKLRAIVLEMATDLIS
Ga0302218_101625891	3300028863	Palsa	PLRERVRATAATLTVGAICHVYLTQVDDPDKLRAVILEIATDLIH
Ga0302235_104493331	3300028877	Palsa	IAVGATCRFFLQQADDRDKLRAIVLEIATDLIPVDR
Ga0308309_103512251	3300028906	Soil	VRATAAMLSVGATCHVYLQQVDDPDKLRAITLEIATDLIH
Ga0302177_101569792	3300030053	Palsa	PLRDRVRASTAVIAVGATCRFFLQQTDDRDKLRAIVLEIATDLTS
Ga0310037_101419372	3300030494	Peatlands Soil	RTTAAVLSVGATYMFYLQQAEDQDKLGAIILELATDLTH
Ga0265460_122986242	3300030740	Soil	APLRARVRATAAVLSVGATYMFYLQEVDDPDKLGAIILELATDLTH
Ga0302314_112741362	3300030906	Palsa	STAVIAVGAGCRFFLRQAGDEDKLRAIVLEMATDLTSG
Ga0265754_10437721	3300031040	Soil	LRDRVRATAAMLSVGAACHVYLQQVDDPDKLRAIILEIATDLIH
Ga0302324_1003366323	3300031236	Palsa	DRVRASTAVIAVGATCRFFLQQTDDRDELRTIALEIATDLIPVDR
Ga0302326_112026433	3300031525	Palsa	LRERVRATAATLTVGAICHVYLTQVDDPDKLRAVILEIATDLIH
Ga0310915_111588501	3300031573	Soil	VRATAAMLSVGATCHVYLQQVDDPDKLRAIILEIATDLIH
Ga0318572_105745182	3300031681	Soil	VRATAGVLSVGATCMFYLQQVDDPDKLRAIVLEMATDLIS
Ga0310686_1031482791	3300031708	Soil	RVRATAALLSVGAACHVYLQQVDDPDKLRAIILEIATDLIH
Ga0310686_1117447212	3300031708	Soil	RATAATLTVGATCHVYLQQVDDPDKLRAIILEIATDLIR
Ga0310686_1154177732	3300031708	Soil	RERVRATAATLTVGATCHVYLQQVDDPDKLRAIILEIATDLIR
Ga0318526_104937161	3300031769	Soil	LRDRVRATTAILAVGATCMFYLQRVDDPEKLRAIILETSLDLIH
Ga0318547_105964942	3300031781	Soil	ASAAVLGVGATCHVYLQQVDDPDKLRAIVLEIALDLIR
Ga0318499_100200931	3300031832	Soil	ALLRDRVRASAALLSVGATCHVYLQQVDDPDKLRAIVLEMATDLIH
Ga0306925_119564682	3300031890	Soil	SAAVLGVGATCHVYLQQVDDPDKLRAIVLEIALDLIR
Ga0318520_100982182	3300031897	Soil	GAPLRDRMRATAAVLSVGATCHFYLQQVDDPDKLRAIILEMATDLIS
Ga0306923_107839692	3300031910	Soil	APLRDRVRASAAMLSVGATCHVYLQQIDDPDKLRAIVLEIATDLIH
Ga0310912_112025062	3300031941	Soil	RVRATTAVLAVGTSCMFFLRQVDDPDKLRAIVLEMATDLIS
Ga0310910_111964181	3300031946	Soil	APLRDRVRATAAMLSVGATCHVYQQQVDDPDKLRAIVLEIATDLIH
Ga0318562_103645803	3300032008	Soil	RVRASAALLSVGATCHVYLQQVEDPDKLRAIVLEMATDLIH
Ga0318556_106149961	3300032043	Soil	RVRASAALISVGASCHVYLQQIDDPDKLRAIVLEIATDLIH
Ga0318558_107112301	3300032044	Soil	TALLSVGVTCMFFLQQVDDPDKLRAIVLELATDLVR
Ga0318514_105786072	3300032066	Soil	AMLSVGATCHVYLQQVDDPDKLRAITLEIATDLIH
Ga0311301_100844869	3300032160	Peatlands Soil	RDRVRATTAVLTVGATCMFFLRQVDDPDKLRAIVLEIATDLTS
Ga0307472_1009565411	3300032205	Hardwood Forest Soil	DRVRATTAVLSVGATCMFFLQEVDDRDKLRAIVLEMATDLIS
Ga0335085_113599012	3300032770	Soil	AVLSVGMTCMFFLQQVDDRDKLRAIVLEMATDLIS
Ga0335078_117434002	3300032805	Soil	ATTAVLSVGATCMFFLRQVDDPDKLRAIVLEMATDLIS
Ga0335070_114851111	3300032829	Soil	DRVRATAAVLTVGATCHFYLQQVEDPDKLRAIILEMATDLIS
Ga0335074_104912751	3300032895	Soil	TAAVLSVSATCLFYLQQVDDPDKLRAIVLELATDLIH
Ga0335071_100974731	3300032897	Soil	AVLTVGATCHFYLQQVEDPDKLRAIILEMATDLIS
Ga0318519_103223221	3300033290	Soil	DRVRASAAVLGVGATCHVYLQQVDDPDKLRAIVLEIALDLIR
Ga0314865_088717_680_808	3300033806	Peatland	DRVRATSAVLAVGATCMFYLQQVDDPDKLRAIVLEMATDLVH

Hidden Markov Model


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