Metagenome / Metatranscriptome Family F089255

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F089255
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	66 residues
Representative Sequence	LLASAYALKGEIERAVAELAEARRLVGDDRYSSIARLRAVVSWGAPKDLVESTYFAGLRKAGVPEE
Number of Associated Samples	87
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.02 %
% of genes near scaffold ends (potentially truncated)	87.16 %
% of genes from short scaffolds (< 2000 bps)	88.07 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (71.560 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.780 % of family members)
Environment Ontology (ENVO)	Unclassified (42.202 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.459 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.94% β-sheet: 0.00% Coil/Unstructured: 51.06%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.116.1.0: automated matches	d3byia1	3byi	0.58131
a.116.1.0: automated matches	d2osaa_	2osa	0.56461
a.118.8.1: Tetratricopeptide repeat (TPR)	d1wm5a2	1wm5	0.55732
c.1.25.1: Monomethylamine methyltransferase MtmB	d1l2ra_	1l2r	0.5562
a.261.1.1: GUN4-like	d1z3xa2	1z3x	0.55442

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00378	ECH_1	5.50
PF00211	Guanylate_cyc	4.59
PF00042	Globin	3.67
PF01717	Meth_synt_2	3.67
PF02515	CoA_transf_3	2.75
PF00561	Abhydrolase_1	2.75
PF01925	TauE	1.83
PF09903	DUF2130	1.83
PF13751	DDE_Tnp_1_6	1.83
PF00005	ABC_tran	0.92
PF03466	LysR_substrate	0.92
PF05694	SBP56	0.92
PF13551	HTH_29	0.92
PF13414	TPR_11	0.92
PF00296	Bac_luciferase	0.92
PF13560	HTH_31	0.92
PF02796	HTH_7	0.92
PF12762	DDE_Tnp_IS1595	0.92
PF01914	MarC	0.92
PF07519	Tannase	0.92
PF00111	Fer2	0.92
PF00676	E1_dh	0.92
PF04324	Fer2_BFD	0.92
PF00596	Aldolase_II	0.92
PF04879	Molybdop_Fe4S4	0.92
PF13592	HTH_33	0.92
PF00583	Acetyltransf_1	0.92
PF13561	adh_short_C2	0.92
PF00496	SBP_bac_5	0.92
PF00106	adh_short	0.92
PF08238	Sel1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	4.59
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	3.67
COG1017	Hemoglobin-like flavoprotein	Energy production and conversion [C]	3.67
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	2.75
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.83
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	0.92
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	0.92
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.92
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.56 %
Unclassified	root	N/A	28.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.56 %
Unclassified	root	N/A	28.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.56 %
Unclassified	root	N/A	28.44 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.54 %
Unclassified	root	N/A	28.44 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.79 %
Unclassified	root	N/A	28.44 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.44 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.09 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.59 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.09 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.92 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.09 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Siccirubricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus	0.92 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.09 %
unclassified Magnetospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum	0.92 %
Siccirubricoccus soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.09 %
Magnetospirillum sp. UT-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. UT-4	0.92 %
Siccirubricoccus soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2084038017\|SPCE_SO_FSPRUNR02F0SI1	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300004635\|Ga0062388_100370045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1231	Open in IMG/M
3300005184\|Ga0066671_10809126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300005437\|Ga0070710_10992396	Not Available	611	Open in IMG/M
3300005764\|Ga0066903_105456117	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300005900\|Ga0075272_1056054	Not Available	731	Open in IMG/M
3300006175\|Ga0070712_100951052	Not Available	742	Open in IMG/M
3300006871\|Ga0075434_101717675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300010046\|Ga0126384_11979380	Not Available	557	Open in IMG/M
3300010048\|Ga0126373_10708740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1065	Open in IMG/M
3300010358\|Ga0126370_11947960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	573	Open in IMG/M
3300010359\|Ga0126376_12815230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300010361\|Ga0126378_11245027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841	Open in IMG/M
3300010361\|Ga0126378_12039857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300010361\|Ga0126378_12113340	Not Available	642	Open in IMG/M
3300010366\|Ga0126379_10757869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1068	Open in IMG/M
3300010376\|Ga0126381_100756457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1393	Open in IMG/M
3300010376\|Ga0126381_101668005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	921	Open in IMG/M
3300010376\|Ga0126381_102644178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300010376\|Ga0126381_102858872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300010376\|Ga0126381_105058144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300012096\|Ga0137389_10378173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1207	Open in IMG/M
3300012199\|Ga0137383_10766027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300012202\|Ga0137363_10582861	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300012208\|Ga0137376_10325595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1334	Open in IMG/M
3300012208\|Ga0137376_10577957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	973	Open in IMG/M
3300012899\|Ga0157299_10110633	Not Available	725	Open in IMG/M
3300012929\|Ga0137404_11752942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	577	Open in IMG/M
3300012960\|Ga0164301_10918764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300012971\|Ga0126369_11332659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. UT-4	808	Open in IMG/M
3300012971\|Ga0126369_12693614	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300014166\|Ga0134079_10759850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300014487\|Ga0182000_10307011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300016270\|Ga0182036_10034475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3049	Open in IMG/M
3300016270\|Ga0182036_11445853	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300016357\|Ga0182032_10212711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1479	Open in IMG/M
3300016404\|Ga0182037_10482550	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300016404\|Ga0182037_11269476	Not Available	648	Open in IMG/M
3300016422\|Ga0182039_10886247	Not Available	796	Open in IMG/M
3300016422\|Ga0182039_11836765	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300018064\|Ga0187773_10576074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300021082\|Ga0210380_10344747	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300021168\|Ga0210406_10946812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	645	Open in IMG/M
3300021168\|Ga0210406_11201207	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300021404\|Ga0210389_10855265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300021420\|Ga0210394_11378813	Not Available	600	Open in IMG/M
3300021432\|Ga0210384_11477815	Not Available	585	Open in IMG/M
3300021560\|Ga0126371_10343111	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1627	Open in IMG/M
3300021560\|Ga0126371_11007439	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300021560\|Ga0126371_11839220	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300025903\|Ga0207680_10508787	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300025939\|Ga0207665_11259846	Not Available	590	Open in IMG/M
3300026301\|Ga0209238_1058703	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1369	Open in IMG/M
3300026325\|Ga0209152_10415993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	532	Open in IMG/M
3300027812\|Ga0209656_10320967	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300027874\|Ga0209465_10136422	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300029701\|Ga0222748_1062768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300031057\|Ga0170834_106093839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300031545\|Ga0318541_10507651	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300031546\|Ga0318538_10514176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300031546\|Ga0318538_10590216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300031573\|Ga0310915_10933542	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300031640\|Ga0318555_10656066	Not Available	568	Open in IMG/M
3300031679\|Ga0318561_10387007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300031713\|Ga0318496_10737829	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300031747\|Ga0318502_10435104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	782	Open in IMG/M
3300031748\|Ga0318492_10427550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300031777\|Ga0318543_10174101	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300031779\|Ga0318566_10653782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300031792\|Ga0318529_10573632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031797\|Ga0318550_10221511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	917	Open in IMG/M
3300031797\|Ga0318550_10281261	All Organisms → cellular organisms → Bacteria → Proteobacteria	807	Open in IMG/M
3300031805\|Ga0318497_10876884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300031833\|Ga0310917_11080547	Not Available	536	Open in IMG/M
3300031890\|Ga0306925_12142831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300031893\|Ga0318536_10650785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300031896\|Ga0318551_10756613	Not Available	564	Open in IMG/M
3300031897\|Ga0318520_10355793	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300031910\|Ga0306923_11765471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300031912\|Ga0306921_10093948	All Organisms → cellular organisms → Bacteria	3468	Open in IMG/M
3300031912\|Ga0306921_10429951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1540	Open in IMG/M
3300031941\|Ga0310912_10312056	Not Available	1218	Open in IMG/M
3300031945\|Ga0310913_10234049	Not Available	1288	Open in IMG/M
3300031946\|Ga0310910_10801399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300031946\|Ga0310910_11060588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	632	Open in IMG/M
3300031947\|Ga0310909_10922843	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300031962\|Ga0307479_11376312	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300032025\|Ga0318507_10354685	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300032044\|Ga0318558_10615618	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300032054\|Ga0318570_10363624	Not Available	659	Open in IMG/M
3300032055\|Ga0318575_10409586	Not Available	688	Open in IMG/M
3300032066\|Ga0318514_10748273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300032090\|Ga0318518_10152527	Not Available	1174	Open in IMG/M
3300032094\|Ga0318540_10520684	Not Available	574	Open in IMG/M
3300032261\|Ga0306920_103431023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300032783\|Ga0335079_11839141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	588	Open in IMG/M
3300033289\|Ga0310914_10996461	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300033290\|Ga0318519_10525284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.25%
Host-Associated	Host-Associated	2.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.58%
Aquatic	Environmental → Aquatic	3.67%
Plants	Host-Associated → Plants	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.58%
Freshwater	Environmental → Aquatic → Freshwater	3.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.24%
Loam	Environmental → Terrestrial → Soil → Loam	4.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Contaminated	Environmental → Terrestrial → Soil → Unclassified → Contaminated	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.34%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Contaminated → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2084038017	Soil microbial communities from Hopland, California, USA, that is PCE polluted - amended with soybean oil	Environmental	Open in IMG/M
2189573005	Grass soil microbial communities from Rothamsted Park, UK - FG3 (Nitrogen)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005900	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SPCE_SO_00093620	2084038017	Soil	LPPPYALEGHPERAAAELAEARRLVGDDRYSSLARVRAASSWGAPEVTALAETTYFAGLRKAGVPEE
FG3_09814570	2189573005	Grass Soil	MPAAPGFRDRLAAAYALRGEIERAAAELAEARRLRGDGSFSSIARLRRIYWGVPAVRQLYEATYFAGLRKAGCRRSETPSSHSRRWH
Ga0062388_1003700452	3300004635	Bog Forest Soil	FLASAYALKGDTEPAAAELAEARRLASDDRYSSIARSRPHVYSGWNAPKIRALVEATYFAGLRKAGVPEE*
Ga0066671_108091262	3300005184	Soil	ELAEARRLVGDNRYSSIAQFRAISFWGAPKIRDLIEITYFAGLRRAGVPEE*
Ga0070710_109923961	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AGLASAYALKGEAERAAAELAEARKLSGDDRYSSIARLRATVNWFEPKIRALREATFFAGLRKAGVPEE*
Ga0066689_108591742	3300005447	Soil	ELAEARRLVGGDRYSSIVHFRAISFWGSTAVRDLAEVTYFAGLRKAGVPEY*
Ga0066903_1054561172	3300005764	Tropical Forest Soil	LAAAYALQGEHEPAAAELSQARRLVSDDRYASIARFRAISSWGTADVAALAERTYFAGLRRAGVPEQ*
Ga0075272_10560541	3300005900	Rice Paddy Soil	AVELAEARRLVSDDRYASIACFRAISCWGAPETAALAEVTYFAGLRKVGIPDK*
Ga0070712_1009510522	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SAYALKGEAERAAAELAEARKLSGDDRYSSIARLRATVNWFEPKIRALREATFFAGLRKAGVPEE*
Ga0075434_1017176752	3300006871	Populus Rhizosphere	VHGWLASAYTLIGDSKRAAAELAEARKLGGDQFYSSIARLLGARLWPPNIRALAETTFFAGLRKAGVPEE*
Ga0099791_102177392	3300007255	Vadose Zone Soil	YLASAYALKGETEHAAAELTEARRLRGEGSYSSIARMRAGPLAAAPKIRALVETTYFAGLRKAGVPEE*
Ga0105245_129169432	3300009098	Miscanthus Rhizosphere	ASSCALKGDAERGAAELAEARRLVGDDRYSSIARVRAVTPWGAPAIAGLAEETYLVGLRLAGMPEG*
Ga0099792_109231251	3300009143	Vadose Zone Soil	AWLEKSRSANAGFHRTRASLAAAYALKGDTQHAAAELAEARKLNDRYSSIARLQAVGYFGVPKIRALYEATYFVGLRKAGVPEE*
Ga0126384_119793801	3300010046	Tropical Forest Soil	DIERAAAELAAARRLVGDNRYSSLAHLRTVESWGVLQIQDLVESTYFAGLRKAGVSRN*
Ga0126373_107087401	3300010048	Tropical Forest Soil	AQRAVAELSEARRLAGDDRYGSIARFRAISSWGVPAISVLAEATYFAGLRKAGVPDD*
Ga0126373_109894714	3300010048	Tropical Forest Soil	DTQRATAELAEARRLVADDRYSSIARVRAITPWDTPMMRDLAEATYLAGLRMAGIPEE*
Ga0126373_125325511	3300010048	Tropical Forest Soil	TELAQARRLVGDDRYSSIDRLRAVVSWGAPKELLETTYFAGLRKAGVPETD*
Ga0126370_119479601	3300010358	Tropical Forest Soil	GDAERAAAELAEAYRLVGDDRYSTIARLRAAGSWGVPQVRALFETTYFAGLHKAGVPER*
Ga0126376_128152301	3300010359	Tropical Forest Soil	SATPAHPQFRTFLAAGYALKGDTGRAAIELAEARRLVSDERYSSVAGIRAVTSWGVPSVCALAERTYFAGLRKAGLREK*
Ga0126378_112450271	3300010361	Tropical Forest Soil	SAYALKGEMEPAAAELAEARRLVGDDRYSSIARLRSVVSWGAPKDLVETIYFAGLRKAGVPEE*
Ga0126378_120398571	3300010361	Tropical Forest Soil	EPKRAAYELAEARRLSGDDRYLSLARLQAMVPHREVPRVVRALTEATFFAGLRKAGVPEE
Ga0126378_121133402	3300010361	Tropical Forest Soil	TPAHPQFRTFLAAANALKGGDDRATAELAEARRLVGDDRYSSIARLRAVVSWGAPKDLVETIYFAGLRKAGVPEE*
Ga0126379_107578691	3300010366	Tropical Forest Soil	AHPLFRALLASAYALKGEMELAAAELAEARRLVGDDRYSSIARLRSVVSWGAPKDLVETIYFAGLRKAGVPEE*
Ga0126381_1007564572	3300010376	Tropical Forest Soil	AYALKGEPERAAAELAEARRLFGDDRLSSIAHLRTTETWRAPKIRALFEATYLAGLRKAGVPEE*
Ga0126381_1016680051	3300010376	Tropical Forest Soil	GDTERAAVELEEARRLVEDDRYSTIARLRAVQSWGAPKALVETTYFAGLRKAGVPEE*
Ga0126381_1026441781	3300010376	Tropical Forest Soil	NATPAHPLFRMLLASAYALKGQIEPAAVELAEAHKLVGDDRYSSIARLRSVASWGAPKDLVETIYFAGLRKAGVPEE*
Ga0126381_1028588721	3300010376	Tropical Forest Soil	LKSEIPRAVAELAEARRLVRDDRYSSIARLRAVVSWGAPKDMLEATYFAGLRKAGVPEIDWVGPGPNPNER*
Ga0126381_1050581441	3300010376	Tropical Forest Soil	ATPAHPLFRALLASSYALKGKMELAGAELAEARRLVGDDRYSSIARLRAVVSWGAPKELVETIYFAGLRRAGVPEE*
Ga0126383_120893252	3300010398	Tropical Forest Soil	YTRAFLASAYALKGEPERAAAELAEARRLFGDDRLSSIARLRAVENWRVPKVRALFEATHLVGLRKLGVPEE*
Ga0137389_103781732	3300012096	Vadose Zone Soil	FRTFLASAYALKGETKRAVAELAEARKLVGDDRYSTIARLRAVGSWGAPKVRALFESTYFAGLHIAGMAEE*
Ga0137383_107660272	3300012199	Vadose Zone Soil	TPAHPEFRTFLASVYALKGENDRAAAELAEARRLVGDERYSSIARFRAISFWGAPKVRDLVEITYFAGLRKAGVPEE*
Ga0137363_105828611	3300012202	Vadose Zone Soil	ALKGDIEMAAAELAEARRLVGDERYSSIARVRAITSWGEPTVCALAERTYFAGLRKAGLPN*
Ga0137376_103255951	3300012208	Vadose Zone Soil	ALKGESERAAAELAEARRLVGDDRYSSIAQFRAISFWGAPKVRDLIEITYFAGLRKAGVPEE*
Ga0137376_105779571	3300012208	Vadose Zone Soil	ALKGESERAAAELAEARRLVGDDRYSSIAQFRAISFWGAPTVRDLIEITYFAGLRKAGVPEE*
Ga0157299_101106332	3300012899	Soil	ELAEARKLVGDNRYASIARVRAISSWGVPAIFALAKITYFAGLRKAGLPEE*
Ga0137404_117529421	3300012929	Vadose Zone Soil	YALKDDTEHAAAELAEARRLVGDDRYSGITRLRAAVSHGVPKIRALAEATYFAGLRKAGVPEE*
Ga0164301_109187641	3300012960	Soil	PQFRTFLAAAYALIGDIEMARAELAEARRLVGDARYSSVARVRAITSWGEPTVCALAERTYFAGLREAGLPEE*
Ga0126369_113326591	3300012971	Tropical Forest Soil	AAIFRSFLASAYGLKGDIEGAAAELAAARRLSGDDRYSSIAHLRTVDSWGVAQIRALVENTYFAGLRQAGVPEN*
Ga0126369_126936141	3300012971	Tropical Forest Soil	NATPAHPLFRMLLASAYALKGEIEPAAAELAEAHKLVGDDRYSSIARLRSVVSWGAPKDLVETIYFAGLRKAGVPEE*
Ga0134079_107598501	3300014166	Grasslands Soil	LAAANALKGDNDRAAAELAEARSLVGDNRYSSIAQLRTVDSWGVPQIQALVENTYFAGLRKAGVPEN*
Ga0182000_103070112	3300014487	Soil	GESKPAAAELAEARRLVGDDRYSSIARLRNGETWGAPKIRTLVEMTYFAGLRKAGVPDE*
Ga0182036_100344751	3300016270	Soil	TGRAAAELAEARRLVGDDRYSSIARLRAVEALGVPKVRTMAEATYLAGLRKAGVPES
Ga0182036_114458533	3300016270	Soil	RNAAPAHPQFRTFLASALALKGDIRRAAGELTEARRLISDDRYSSIACLRAAESWGTPEVRALVEAAYFAGLRKAGVPDE
Ga0182032_102127112	3300016357	Soil	NATPAHPQFRTFLAAANALKGDNDRAAAALAEARRLVGDDRYSSIAQLRTVDSWGVPQIQTLVESTYFAGLRKAGVPEN
Ga0182037_104825501	3300016404	Soil	ELTEARRLISDDRYSSIACLRAAESWGTPEVRALVEAAYFAGLRKAGVPDE
Ga0182037_112694761	3300016404	Soil	RTFLAASHALKGDNDRAAAELNEARSLVGDDRYSSTALLRAVGSWGVPMIRALVESTYFPGLRKAGVPEE
Ga0182039_108862472	3300016422	Soil	SAPGHPEFRAFLASAHALKGNTERAAAELTEARRLVGDDRYASIARLRALGSWGMPKVCALFESTYFAGLRKAGVPEE
Ga0182039_118367652	3300016422	Soil	FRALLASAYALKGEIERAVAELAEARRLVGDDRYSSIARLRAVVSWGAPKDLVETTYFAGLRKAGIPEE
Ga0187773_105760742	3300018064	Tropical Peatland	MERAADELAEARRLVGDDRYSSIASFRSITSWGAPKIRELVERTYFAGLRLVGVPDRVA
Ga0210380_103447471	3300021082	Groundwater Sediment	ATELAEARRLVGDDRYSSIAQFRAISCWGASKVRDLIERTYFAGLRQAGVPEE
Ga0210406_109468122	3300021168	Soil	TYALKGETKRALAELAEARRLVGDDRYSSIARLRTVVSWGAPKLLVETAYFAGLRKAGVP
Ga0210406_112012072	3300021168	Soil	ASAYALYGEIEHAVAELAEARRLVVDDRYSSIARLRAVVSWGAPKDLVESTYFAGLRKAGVPEA
Ga0210389_108552652	3300021404	Soil	SAYALYGEIEHAVAELAEARRLVVDDRYSSIARLRAVVSWGAPKDLVESTYFSGLR
Ga0210394_113788131	3300021420	Soil	AVASLAEARILVGDNRFSSIARVRANGANTNSSDPKIQALREATFFAGLRKAGVPEE
Ga0210384_114778152	3300021432	Soil	PPHSMLAAAYGLKGATDRAAAELAEARKLVSDDRFSSIARQRVRIAKNFENPAIRALFETTFFAGLRKAGVPEE
Ga0126371_103431112	3300021560	Tropical Forest Soil	TPAHPLFRMLLASAYALKGQIEPAAAELAEAHKLVGDDRYSSIARLRSVVSWGAPKNLVETIYFAGLRKAGVPEE
Ga0126371_110074392	3300021560	Tropical Forest Soil	FVRAGAELAEARALAGDDRYASIARFRAISCWGVPEICALAEATYFAGLREAGVLDE
Ga0126371_118392202	3300021560	Tropical Forest Soil	AAAVELAEARRLAGDDRYESIARFRAISFWGVAQISALAEATYFAGLRKAGVPDN
Ga0207680_105087871	3300025903	Switchgrass Rhizosphere	LKGDMERAAAELAEARRLVGDDRYSSIARVRGVTSWGAPAIADLAEATYLAGLRRAGMPE
Ga0207665_112598461	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VLDPESVAAQSWLAIELAEARRLVGDDRISSIARLRAVVSWGAPMDLVETTYFAGLRKAGLPEE
Ga0209238_10587031	3300026301	Grasslands Soil	TPAHPQFRTFLAAAYALKGDIEMAAAELAEARRLVGDERYSSIARVRAITSWGEPAVCALAERTYFAGLRKAGLPN
Ga0209152_104159932	3300026325	Soil	ELATARALVGDNRYASIAELRAVENWGVTKIRALAEASYFAGLRRAGMPER
Ga0209448_102569482	3300027783	Bog Forest Soil	GEAQCAAAELAEASRLSLDDRYSSIARLKAGGLLGAAPLTRALFEATFFAGLRKDGMPEE
Ga0209656_103209672	3300027812	Bog Forest Soil	MLNAEIERSAVELAEACRLVGDGRYSSIARLRAVEALGVPEVRAMAEATYFSGLRKAGVPDE
Ga0209465_101364221	3300027874	Tropical Forest Soil	ASSYALKGEIERAAAELAEARRLVSDDRYSSIARLRAVVSWGAPQLLVENTYFAGLRRAGVPEE
Ga0222748_10627681	3300029701	Soil	DSERAAAELAEARRLVGDNRYATIARLRAAEPWGTPKVCGLVEATYFAGLRMARMPEE
Ga0170834_1060938391	3300031057	Forest Soil	RTLLASAYALKGETERALAELAEARRLVGDDRYSSIARLRAVVSWGAPQLLVETTYFAGLRKAGVPEE
Ga0318541_105076511	3300031545	Soil	GEMEPAAAELAEARRLVGDDRYSSIARLRSVVSWGAPKDLVETIYFAGLRKAGVPEE
Ga0318538_105141761	3300031546	Soil	RNATPAHPLFRALLASAYALTGEIERAVAELAEARRLVVDDRYSSIARLRAVVSWGAPKDLVESTYFVGLRKAGVPEE
Ga0318538_105902161	3300031546	Soil	RNAAPAHPQFRTFLASALALKGDTGRAAGELAEARRLVGDDRYSSIARLRAVEALGVPKVRTMAEATYLAGLRKAGVPES
Ga0310915_109335421	3300031573	Soil	HALKGNTERAAAELTEARRLVGDDRYASIARLRALGSWGMPKVCALFESTYFAGLRKAGVPEE
Ga0318555_106560662	3300031640	Soil	ASALALKGDIRRAAGELAEARRLVSDDRYSSIACLRAAESWGTPEVRALVEAAYFAGLRKAGVPDE
Ga0318561_103870071	3300031679	Soil	FLASALALKGDTGRAAGELAEARRLVGDDRYSSIARLRAVEALGVPKVRTMAEATYLAGLRKAGVPES
Ga0318496_107378292	3300031713	Soil	LASALALKGDIRRAAGELTEARRLISDDRYSSIACLRAAESWGTPEVRALVEAAYFAGLRKAGVPDE
Ga0318502_104351041	3300031747	Soil	VLASALALKGDTGRAAGELAEARRLVGDDRYSSIARLRAVEALGVPKVRTMAEATYLAGLRKAGVPES
Ga0318492_104275502	3300031748	Soil	AYAIKGDIERAAAELAEARRLAGDDRYSSIARLRAGGCCGSPKTRALWEATYLAGLRKAGVPEE
Ga0318543_101741012	3300031777	Soil	HPLFRALLASSYALRGEMELAAAELAEARRLVGDDRYSSIARLRTVVSWGAPKDLVETIYFAGLRKAGVPDD
Ga0318566_106537821	3300031779	Soil	LLASAYALKGEIERAVAELAEARRLVGDDRYSSIARLRAVVSWGAPKDLVESTYFAGLRKAGVPEE
Ga0318529_105736321	3300031792	Soil	CERARNATPAHPLFRALLASAYALKGEMEPAAAELAEARRLVGDDRYSSIARLRSVVSWGAPKDLVETIYFAGLRKAGVPEE
Ga0318550_102215111	3300031797	Soil	FRALLASAYALNGEIEHAVAELAEARRLVVDDRYSSIARLRAVVSWGAPKDLVESTYFAGLRKAGVPEA
Ga0318550_102812612	3300031797	Soil	AVPSHHSRLASAYAIKGDIERAAAELAEARRLAGDDRYSSIARLRAGGCCGSPKTRALWEATYLAGLRKAGVPEE
Ga0318497_108768841	3300031805	Soil	TFLASALALKGDTGRAAGELAEARRLVGDDRYSSIARLRAVEALGVPKVRTMAEATYLAGLRKAGVPES
Ga0310917_110805471	3300031833	Soil	RMLLASAYALKGEIELAAAELAEARKLVGDDRYSSIARLRSVVSWGAPKDLVETIYFAGLRKAGVPEE
Ga0306925_109754892	3300031890	Soil	GRASAELTEARRLVNDDRYSSIVRLRAIEPWGAPKVRALFETTYFAGLRKAGIPDQ
Ga0306925_121428312	3300031890	Soil	IFRTLLASAYALKGETKRALAELAEARRLVGDDRYSSIARLRAVVSWGAPQLLVETTYFAGLRRAGVPEE
Ga0318536_106507852	3300031893	Soil	LLASSYALRGEMELAAAELAEARRLVGDDRYSSIARLRTVVSWGAPKDLVETIYFAGLRKAGVPDD
Ga0318551_107566131	3300031896	Soil	LKGDIERAAAELAEARRLVEDDRYSSIARLRAVVSWGAPQLLVETTYFAGLRKAGVPEE
Ga0318520_103557931	3300031897	Soil	HPLFRALLAAAYALKGEMEPAAAELAEARRLVGDDRYSSIVRLREVVSWGAPKDLVEATYFAGLRKAGVPEE
Ga0306923_117654712	3300031910	Soil	PIFRTLLASAYALKGETKRALAELAEARRLVGDDRYSSIARLRAVVSWGAPQLLVETTYFAGLRRAGVPEE
Ga0306921_100939481	3300031912	Soil	AYALKGEIELAAAELAEARKLVGDDRYSSIARLRSVVSWGAPKDLVETIYFAGLRKAGVPEE
Ga0306921_104299513	3300031912	Soil	GHPEFRSLLASACALKGECERAAAELAEARRIVGDDRYASISRFRETTRWGAPKVQELAESTFFAGLRKAGVPEDTPVSPGVVKPARFRR
Ga0310912_103120562	3300031941	Soil	AMKGNTERAAAELTEARRLVGDDRYASIARLRALGSWGMPKVCALFESTYFAGLRKAGVPEE
Ga0310913_102340492	3300031945	Soil	RNSAPGHPEFHAFLASAHALKGNTERAAAELTEARRLVGDDRYASIARLRALGSWGMPKVCALFESTYFAGLRKAGVPEE
Ga0310910_108013991	3300031946	Soil	KRALAELAEARRLVGDDRYSSITRLRAVVSWGAPQLLVETTYFAGLRRAGVPEE
Ga0310910_110605882	3300031946	Soil	AHPLFRALLASSYALRGEMELAAAELAEARRLVGDDRYSSIARLRTVVSWGAPKDLVETIYFAGLRKAGVPDD
Ga0310909_109228432	3300031947	Soil	EAAAAELAEARRLVGDERFSSIARLRAVVSWGAPKDLVETTYFAGLRRLGMPEE
Ga0307479_113763121	3300031962	Hardwood Forest Soil	IRAGLAAAYALTGETARAAGELAEARKLSGDDRYSSIARLRAVIFVGAAPKTRELYEATYFIGLRLAGLPEE
Ga0307479_119152012	3300031962	Hardwood Forest Soil	AAAELAEARRLVGDARYSSIARFRSIASSAVPKVRALFDSTYLTGLRMAGVRED
Ga0318507_103546852	3300032025	Soil	LASAHALKGNTERAAAELTEARRLVGDDRYASIAHLRALGSWGMPKVCALFESTYFAGLRKAGVPEE
Ga0318558_106156182	3300032044	Soil	SALALKGDIRRAAGELTEARRLISDDRYSSIACLRAAESWGTPEVRALVEAAYFAGLRKAGVPDE
Ga0318570_103636242	3300032054	Soil	LKGNTERAAAELTEARRLVGDDRYASIARLRALGSWGMPKVCALFESTYFAGLRKAGVPE
Ga0318575_104095861	3300032055	Soil	RSIVELAEACRLVGDGRYSSIARLRSVEGLGVPEVRAIAEATYFSGLRKAGVPDE
Ga0318514_107482731	3300032066	Soil	CERARNATPAHPLFRALLASSYALRGEMELAAAELAEARRLVGDDRYSSIARLRTVVSWGAPKDLVETIYFAGLRKAGVPDD
Ga0318518_101525272	3300032090	Soil	HPEFHAFLASAHALKGNTERAAAELTEARRLVGDDRYASIARLRALGSWGMPKVCALFESTYFAGLRKAGVPEE
Ga0318540_105206842	3300032094	Soil	LLASAYALKGEIERAGAELAEARRLVVDNRYTSIARLRAVVSWGAPKDLVESTYFAGLRKAGVPEE
Ga0306920_1034310231	3300032261	Soil	SAYALKGEIEPAAAELAEARRLVGDDRYSSIARLRSVVSWGAPKDLVETIYFAGLRKAGVPEE
Ga0335079_118391411	3300032783	Soil	PEFRTLLAAAYALLGDTERAAVELAQARRLVSDDRYASIARFRAISHWGVPEIAELAERTYFAGLRRAGVAET
Ga0310914_109964612	3300033289	Soil	ATPGHPEFRTLLASACALKGECERAAAELAEARRIVGDDRYASISRFRETTRWGAPKVQELAESTFFAGLRKAGVPEDTPVSPGVVKPARFRR
Ga0318519_105252842	3300033290	Soil	AKRRNATPAHPLFRALLASAYALKGEIERAGAELAEARRLVVDNRYTSIARLRAVVSWGAPKDLVESTYFAGLRKAGVPEE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089255

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences