Metagenome / Metatranscriptome Family F089250

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089250
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	70 residues
Representative Sequence	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCMRAMSNLAARKR
Number of Associated Samples	99
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.15 %
% of genes near scaffold ends (potentially truncated)	40.37 %
% of genes from short scaffolds (< 2000 bps)	88.07 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.972 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (33.027 % of family members)
Environment Ontology (ENVO)	Unclassified (33.945 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 74.65% β-sheet: 0.00% Coil/Unstructured: 25.35%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF11742	DUF3302	10.09
PF00583	Acetyltransf_1	9.17
PF07969	Amidohydro_3	9.17
PF03976	PPK2	6.42
PF13533	Biotin_lipoyl_2	3.67
PF07908	Obsolete Pfam Family	2.75
PF00343	Phosphorylase	1.83
PF03636	Glyco_hydro_65N	1.83
PF03633	Glyco_hydro_65C	1.83
PF16576	HlyD_D23	1.83
PF13586	DDE_Tnp_1_2	0.92
PF12700	HlyD_2	0.92
PF07885	Ion_trans_2	0.92
PF00529	CusB_dom_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	6.42
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	3.67
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	1.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.55 %
Unclassified	root	N/A	33.03 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.28 %
Unclassified	root	N/A	33.03 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.18 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.93 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.26 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.92 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.92 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.26 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.92 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.92 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.83 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.92 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.92 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	1.83 %
Methylobacterium sp. 17Sr1-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	0.92 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.92 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_327346_length_1868_cov_7.624197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1900	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100543688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	1567	Open in IMG/M
3300000787\|JGI11643J11755_11801740	Not Available	532	Open in IMG/M
3300000787\|JGI11643J11755_11823643	Not Available	710	Open in IMG/M
3300000858\|JGI10213J12805_10584602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
3300001991\|JGI24743J22301_10029065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1084	Open in IMG/M
3300002568\|C688J35102_118576589	Not Available	573	Open in IMG/M
3300004156\|Ga0062589_101982239	Not Available	590	Open in IMG/M
3300004479\|Ga0062595_100490946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	918	Open in IMG/M
3300005330\|Ga0070690_100377226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1036	Open in IMG/M
3300005341\|Ga0070691_10274141	All Organisms → cellular organisms → Bacteria → Proteobacteria	913	Open in IMG/M
3300005456\|Ga0070678_102380219	Not Available	503	Open in IMG/M
3300005466\|Ga0070685_10795296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300005539\|Ga0068853_100682467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	979	Open in IMG/M
3300005545\|Ga0070695_101684974	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300005547\|Ga0070693_100919104	Not Available	657	Open in IMG/M
3300005564\|Ga0070664_100711907	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	936	Open in IMG/M
3300005614\|Ga0068856_102719079	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300005719\|Ga0068861_102496802	Not Available	520	Open in IMG/M
3300006038\|Ga0075365_10027735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3606	Open in IMG/M
3300006047\|Ga0075024_100506348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300006175\|Ga0070712_101131310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300006177\|Ga0075362_10222418	Not Available	923	Open in IMG/M
3300006358\|Ga0068871_101668884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	604	Open in IMG/M
3300006573\|Ga0074055_11823079	All Organisms → cellular organisms → Bacteria → Proteobacteria	2949	Open in IMG/M
3300006579\|Ga0074054_11995110	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300006844\|Ga0075428_101935893	Not Available	612	Open in IMG/M
3300006845\|Ga0075421_100187107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2571	Open in IMG/M
3300007788\|Ga0099795_10369601	Not Available	645	Open in IMG/M
3300009143\|Ga0099792_11246032	Not Available	506	Open in IMG/M
3300009176\|Ga0105242_11589066	Not Available	687	Open in IMG/M
3300010403\|Ga0134123_12082690	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300012212\|Ga0150985_119694173	Not Available	513	Open in IMG/M
3300012911\|Ga0157301_10218600	Not Available	652	Open in IMG/M
3300012944\|Ga0137410_11047764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300012951\|Ga0164300_10028045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2035	Open in IMG/M
3300012957\|Ga0164303_10382127	Not Available	863	Open in IMG/M
3300012960\|Ga0164301_10655058	All Organisms → cellular organisms → Bacteria → Proteobacteria	783	Open in IMG/M
3300012961\|Ga0164302_10045215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2144	Open in IMG/M
3300012984\|Ga0164309_10599495	All Organisms → cellular organisms → Bacteria → Proteobacteria	860	Open in IMG/M
3300012986\|Ga0164304_10726611	Not Available	758	Open in IMG/M
3300012989\|Ga0164305_10204612	All Organisms → cellular organisms → Bacteria → Proteobacteria	1391	Open in IMG/M
3300013308\|Ga0157375_12134697	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300015241\|Ga0137418_10519282	Not Available	949	Open in IMG/M
3300015372\|Ga0132256_100219753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1956	Open in IMG/M
3300015372\|Ga0132256_100408134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1461	Open in IMG/M
3300015373\|Ga0132257_103333346	Not Available	585	Open in IMG/M
3300015374\|Ga0132255_100296467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2326	Open in IMG/M
3300017965\|Ga0190266_10008152	All Organisms → cellular organisms → Bacteria → Proteobacteria	2545	Open in IMG/M
3300017965\|Ga0190266_10993795	Not Available	561	Open in IMG/M
3300018028\|Ga0184608_10015063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2713	Open in IMG/M
3300018031\|Ga0184634_10055414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1651	Open in IMG/M
3300018054\|Ga0184621_10114065	All Organisms → cellular organisms → Bacteria → Proteobacteria	963	Open in IMG/M
3300018061\|Ga0184619_10218871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300018067\|Ga0184611_1009559	All Organisms → cellular organisms → Bacteria	2715	Open in IMG/M
3300018067\|Ga0184611_1053342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1352	Open in IMG/M
3300018072\|Ga0184635_10339207	Not Available	580	Open in IMG/M
3300018073\|Ga0184624_10084714	All Organisms → cellular organisms → Bacteria → Proteobacteria	1338	Open in IMG/M
3300018073\|Ga0184624_10085595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1332	Open in IMG/M
3300018469\|Ga0190270_11051392	Not Available	844	Open in IMG/M
3300018476\|Ga0190274_10816280	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M
3300019356\|Ga0173481_10381008	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300020001\|Ga0193731_1109605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	707	Open in IMG/M
3300020016\|Ga0193696_1060387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	995	Open in IMG/M
3300021344\|Ga0193719_10105711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1224	Open in IMG/M
3300021363\|Ga0193699_10103893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1148	Open in IMG/M
3300022756\|Ga0222622_10039994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2575	Open in IMG/M
3300025315\|Ga0207697_10306255	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300025917\|Ga0207660_11130604	Not Available	638	Open in IMG/M
3300025920\|Ga0207649_11591949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	517	Open in IMG/M
3300025927\|Ga0207687_10034678	All Organisms → cellular organisms → Bacteria → Proteobacteria	3427	Open in IMG/M
3300025928\|Ga0207700_10761943	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300025934\|Ga0207686_11495626	Not Available	557	Open in IMG/M
3300025934\|Ga0207686_11608804	Not Available	537	Open in IMG/M
3300025981\|Ga0207640_10340897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1200	Open in IMG/M
3300026035\|Ga0207703_10445107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1209	Open in IMG/M
3300026035\|Ga0207703_10844768	Not Available	875	Open in IMG/M
3300026118\|Ga0207675_102719473	Not Available	503	Open in IMG/M
3300026121\|Ga0207683_11744711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300026995\|Ga0208761_1012865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300027663\|Ga0208990_1061761	Not Available	1098	Open in IMG/M
3300027866\|Ga0209813_10031338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1569	Open in IMG/M
3300027909\|Ga0209382_10425218	Not Available	1476	Open in IMG/M
3300027915\|Ga0209069_10636929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300028379\|Ga0268266_11412863	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300028536\|Ga0137415_11064752	Not Available	621	Open in IMG/M
3300028710\|Ga0307322_10002671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3727	Open in IMG/M
3300028712\|Ga0307285_10049324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	1047	Open in IMG/M
3300028715\|Ga0307313_10216438	Not Available	595	Open in IMG/M
3300028718\|Ga0307307_10075482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	1009	Open in IMG/M
3300028718\|Ga0307307_10169485	Not Available	686	Open in IMG/M
3300028720\|Ga0307317_10013109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2484	Open in IMG/M
3300028768\|Ga0307280_10204114	Not Available	699	Open in IMG/M
3300028793\|Ga0307299_10269612	Not Available	639	Open in IMG/M
3300028796\|Ga0307287_10241444	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300028807\|Ga0307305_10291957	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
3300028809\|Ga0247824_10239035	All Organisms → cellular organisms → Bacteria → Proteobacteria	1004	Open in IMG/M
3300028814\|Ga0307302_10064334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1719	Open in IMG/M
3300028819\|Ga0307296_10209466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1058	Open in IMG/M
3300028819\|Ga0307296_10330895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	831	Open in IMG/M
3300028819\|Ga0307296_10682382	Not Available	561	Open in IMG/M
3300028824\|Ga0307310_10101379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1281	Open in IMG/M
3300031170\|Ga0307498_10483132	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031199\|Ga0307495_10195087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300031226\|Ga0307497_10489862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300031421\|Ga0308194_10126915	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300031944\|Ga0310884_10936321	Not Available	536	Open in IMG/M
3300032174\|Ga0307470_10537504	Not Available	861	Open in IMG/M
3300032180\|Ga0307471_101493047	All Organisms → cellular organisms → Bacteria → Proteobacteria	834	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.56%
Host-Associated	Host-Associated	28.44%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.55%
Plants	Host-Associated → Plants	28.44%
Aquatic	Environmental → Aquatic	11.01%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.93%
Sediment	Environmental → Aquatic → Sediment	11.01%
Roots	Host-Associated → Plants → Roots	3.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.01%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.75%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	33.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.75%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00327030	2140918013	Soil	MLDWIGTKILAPMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCM
INPhiseqgaiiFebDRAFT_1005436882	3300000364	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCMRAMSNLAAWKR*
JGI11643J11755_118017401	3300000787	Soil	MLDWIGTKILAXMTLLPAVFVXEXSPXFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRXMSNLATRKR*
JGI11643J11755_118236431	3300000787	Soil	MLDWIGTKILALITLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCMRAMSNL
JGI10213J12805_105846021	3300000858	Soil	MLDWIGEKILAIVTYVPALLVAEDSPNFTAIRAMFGLLLIVLVAYVIAMRPFRSAIARWTRAMSNLVRKP*
JGI24743J22301_100290652	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAM
C688J35102_1185765891	3300002568	Soil	MLDWIGTKILALMTLLPAVFVDETSPNFTAIRAMFGLSFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR*
Ga0062589_1019822391	3300004156	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLGAYLIAMRPFRSTIARCMRAMSNLATRKR*
Ga0062595_1004909462	3300004479	Soil	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMSGLAMRKR*
Ga0070690_1003772262	3300005330	Switchgrass Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMSGVAMRKR*
Ga0070691_102741411	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	LALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMSGLAMRKR*
Ga0070678_1023802192	3300005456	Miscanthus Rhizosphere	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVTTRPVRSAVARCMRAMSDLAARNR*
Ga0070685_107952961	3300005466	Switchgrass Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRTTIARCMRAMAGLATRKR*
Ga0068853_1006824672	3300005539	Corn Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSG
Ga0070695_1016849742	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	LALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR*
Ga0070693_1009191041	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMAGLAMRKR*
Ga0070664_1007119072	3300005564	Corn Rhizosphere	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCM
Ga0068856_1027190792	3300005614	Corn Rhizosphere	TCGGGDARLDRTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLATRKR*
Ga0068861_1024968021	3300005719	Switchgrass Rhizosphere	MLDWIGTKILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRVMSNLAAPKR*
Ga0075365_100277353	3300006038	Populus Endosphere	MLDWIGTKILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRVMSNLAARKR*
Ga0075024_1005063482	3300006047	Watersheds	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMAGVA
Ga0070712_1011313102	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRA
Ga0075362_102224182	3300006177	Populus Endosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMAGLATRKR*
Ga0068871_1016688842	3300006358	Miscanthus Rhizosphere	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVTTRPVPSAVARCMRAMSDLAARKR*
Ga0074055_118230791	3300006573	Soil	KEHQWNLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMSGLAMRKR*
Ga0074054_119951102	3300006579	Soil	ALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR*
Ga0075428_1019358931	3300006844	Populus Rhizosphere	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSHLAARKR*
Ga0075421_1001871073	3300006845	Populus Rhizosphere	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLATRKR*
Ga0099795_103696012	3300007788	Vadose Zone Soil	MRQRPFRSSQNSAMPVEILRTKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMSNLAARKR*
Ga0099792_112460321	3300009143	Vadose Zone Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNPAARKR*
Ga0105242_115890661	3300009176	Miscanthus Rhizosphere	MLDWIGTKILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR*
Ga0134123_120826901	3300010403	Terrestrial Soil	PMLDWIGTQILARMTLLPSVCGDEKSPTFTAIRARFGLVFIVLVAYLIAMRPFRSAIARCMRAMSGLAMRKR*
Ga0150985_1196941731	3300012212	Avena Fatua Rhizosphere	MLDWIGAKILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR*
Ga0157301_102186001	3300012911	Soil	MLDWIGTKILALMTLLPAVFVDETSPNFTAIRAMFGLSFIVLVAYLIAMRPFRSTIARCMRVMSNLAARK
Ga0137410_110477642	3300012944	Vadose Zone Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMSNLAARKR*
Ga0164300_100280452	3300012951	Soil	MLDWIGTQILALMTLLSAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR*
Ga0164303_103821272	3300012957	Soil	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVATRPVRSAVARCMRAMSDLAARKC*
Ga0164301_106550581	3300012960	Soil	MLDWIGTKILALMTLLPAVFVDEKSLNFTAIRAMCGLGFIVLVAYLIALRPFRSTIARCMRAMSNLAARKH*
Ga0164302_100452152	3300012961	Soil	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVTTRPVRLAFARCMRAMSDLAARKR*
Ga0164309_105994952	3300012984	Soil	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVATRPVRSAVARCMRAMSDLAARKR*
Ga0164304_107266111	3300012986	Soil	MLDWIGTKILALMTLLPAVFVDETSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR*
Ga0164305_102046123	3300012989	Soil	MLDWIGTKILALMTLLPAVFVDEKSLNFTAIRAMFGLGFIVLVAYLIALRPFRSTIARCMRAMSNLAARKH*
Ga0157375_121346971	3300013308	Miscanthus Rhizosphere	ILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRVMSNLAARKR*
Ga0137418_105192823	3300015241	Vadose Zone Soil	VLDWISETILAIVTYLPALMVAEDSPNFMLTRVMLGLLLIVLVVYVIALVPFRPVVARCIRTMSNLFVRRL*
Ga0132256_1002197532	3300015372	Arabidopsis Rhizosphere	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVTTRPVRSAVARCMRAMSDLAARKR*
Ga0132256_1004081342	3300015372	Arabidopsis Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMAGLTTRKR*
Ga0132257_1033333462	3300015373	Arabidopsis Rhizosphere	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTLARCMRAMSHLAARKR*
Ga0132255_1002964673	3300015374	Arabidopsis Rhizosphere	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVTTRPVRSAVARCMRAMSDLAARKC*
Ga0190266_100081521	3300017965	Soil	KTRVYRGEEPKLDWIGTPIIAMMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR
Ga0190266_109937951	3300017965	Soil	GALTKIEAANSAMAVGTLRRKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCMRAMSNLAARKR
Ga0184608_100150633	3300018028	Groundwater Sediment	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMLAMSNLAARKR
Ga0184634_100554143	3300018031	Groundwater Sediment	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0184621_101140651	3300018054	Groundwater Sediment	KILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMSNLAARKR
Ga0184619_102188712	3300018061	Groundwater Sediment	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMSNLAARKR
Ga0184611_10095593	3300018067	Groundwater Sediment	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCMRAMSNLAAWKR
Ga0184611_10533422	3300018067	Groundwater Sediment	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKL
Ga0184635_103392071	3300018072	Groundwater Sediment	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCMRAMSHLAAWKR
Ga0184624_100847142	3300018073	Groundwater Sediment	MTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR
Ga0184624_100855952	3300018073	Groundwater Sediment	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRPTIARCIRAMSNLAARKG
Ga0190270_110513921	3300018469	Soil	MAVGTLRRKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCVRAMSNLAARKR
Ga0190274_108162802	3300018476	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSSIARCMRAISNLAARKR
Ga0173481_103810081	3300019356	Soil	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRTTIARCMRAMAGLATRKR
Ga0193731_11096051	3300020001	Soil	PGDRPPCMRQRPFRSSQNSAMPVGILRRKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMSNLAARKR
Ga0193696_10603872	3300020016	Soil	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR
Ga0193719_101057113	3300021344	Soil	PMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0193699_101038933	3300021363	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMS
Ga0222622_100399941	3300022756	Groundwater Sediment	TLGKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0207697_103062551	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMSGVAMRKR
Ga0207660_111306041	3300025917	Corn Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMAGLAMRKR
Ga0207649_115919492	3300025920	Corn Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGFVFIVLVAYLIAMRPFRSAIARCMRTTSNLAARKR
Ga0207687_100346781	3300025927	Miscanthus Rhizosphere	LDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMSGLAMRKR
Ga0207700_107619431	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	TQILAPMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMSGLAMRKR
Ga0207686_114956262	3300025934	Miscanthus Rhizosphere	MLDWIGTKILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0207686_116088042	3300025934	Miscanthus Rhizosphere	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVTTRPVRSAVARCMRAMSDLAARKC
Ga0207640_103408971	3300025981	Corn Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCLRA
Ga0207703_104451071	3300026035	Switchgrass Rhizosphere	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRK
Ga0207703_108447681	3300026035	Switchgrass Rhizosphere	MLDWIGTKILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRVMS
Ga0207675_1027194731	3300026118	Switchgrass Rhizosphere	MLDWIGTKILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRVMSNLAAPKR
Ga0207683_117447111	3300026121	Miscanthus Rhizosphere	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLVTTRPVRSAVARCMRAMSDLAARNR
Ga0208761_10128651	3300026995	Soil	MLDWIGTQILALMTLLPAVFVDEKSPTFAAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR
Ga0208990_10617612	3300027663	Forest Soil	MRQRPFRSSQNSAMPVEILRTKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMSNLAARKR
Ga0209813_100313381	3300027866	Populus Endosphere	TKILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRVMSNLAARKR
Ga0209382_104252183	3300027909	Populus Rhizosphere	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLATRKR
Ga0209069_106369292	3300027915	Watersheds	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAMAGVAQ
Ga0268266_114128631	3300028379	Switchgrass Rhizosphere	MLDWIGTKILALMTLLPAVFVDEQSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRVMSNLAARKR
Ga0137415_110647521	3300028536	Vadose Zone Soil	VLDWISETILAIVTYLPALMVAEDSPNFMLTRVMLGLLLIVLVVYVIALVPFHPVVARCIRTMSNLFVRGL
Ga0307322_100026713	3300028710	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCIRAMSNLAARKG
Ga0307285_100493241	3300028712	Soil	ILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0307313_102164381	3300028715	Soil	NSAMAVGTLGKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0307307_100754823	3300028718	Soil	LLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0307307_101694851	3300028718	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCIRAMSN
Ga0307317_100131094	3300028720	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMLAM
Ga0307280_102041142	3300028768	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMLAMS
Ga0307299_102696122	3300028793	Soil	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLIAMRPFRSAISRCMRAMAGLATRKR
Ga0307287_102414441	3300028796	Soil	MPVGILRRKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMSNLAARKR
Ga0307305_102919571	3300028807	Soil	TKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIVRCMRAMSNLAARKR
Ga0247824_102390351	3300028809	Soil	TQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAMRKR
Ga0307302_100643343	3300028814	Soil	ALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARK
Ga0307296_102094663	3300028819	Soil	AMAVGTLGKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0307296_103308952	3300028819	Soil	MLDWIGAKILALMTLLPAVFVDEKSATFTAIRAMFGLVFIVLVAYLIAMRPFRSAISRCMRAM
Ga0307296_106823821	3300028819	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLVAMRPFRSTIARCMRAMSHLAARKR
Ga0307310_101013793	3300028824	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSTIARCI
Ga0307498_104831321	3300031170	Soil	EGALTKVEAANSAMPVGILRRKPMLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCMRAMSNLAAWKR
Ga0307495_101950872	3300031199	Soil	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAIARCMRAVSGLAM
Ga0307497_104898621	3300031226	Soil	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLIAMRPFRSAVARCMRAMAGLATRKR
Ga0308194_101269151	3300031421	Soil	MLDWIGTKILALMTLLPAVFVDEKSPNFTAIRAMFGLGFIVLVAYLIAMRPFRSAIARCMRAMSNLAARKR
Ga0310884_109363212	3300031944	Soil	MLDWIGTQILALMTLLPAVFVDEKSPTFTAIRAMFGLVFIVLVAYLVATRPVRSAVARCMRAMSDLAARKR
Ga0307470_105375041	3300032174	Hardwood Forest Soil	MLDWIGTKILALMTLLPAVFVDETSPNFTAVRAMFGLGFIVLVAYLIAMRPFRSTIARCMRAMSNLAARKR
Ga0307471_1014930472	3300032180	Hardwood Forest Soil	MLDWIGDKIFTVVTFVPALFVDEKSPNFMLIRAMFGLLLIVLIVYLMAMRPFRSAIARCMRAVSDRIARKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089250

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences