Metagenome Family F089245

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089245
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	42 residues
Representative Sequence	FSAGAVTFQLRAWTDRHEDWAQLRSDLSVAVNEALAREKIAIA
Number of Associated Samples	83
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.633 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.523 % of family members)
Environment Ontology (ENVO)	Unclassified (38.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.055 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.30% β-sheet: 0.00% Coil/Unstructured: 50.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF05977	MFS_3	4.59
PF09722	Xre_MbcA_ParS_C	3.67
PF00501	AMP-binding	1.83
PF03781	FGE-sulfatase	1.83
PF00924	MS_channel	1.83
PF03734	YkuD	1.83
PF07929	PRiA4_ORF3	0.92
PF07399	Na_H_antiport_3	0.92
PF00144	Beta-lactamase	0.92
PF07731	Cu-oxidase_2	0.92
PF13414	TPR_11	0.92
PF05988	DUF899	0.92
PF08780	NTase_sub_bind	0.92
PF09865	DUF2092	0.92
PF11706	zf-CGNR	0.92
PF04028	DUF374	0.92
PF00884	Sulfatase	0.92
PF00128	Alpha-amylase	0.92
PF13377	Peripla_BP_3	0.92
PF08388	GIIM	0.92
PF02371	Transposase_20	0.92
PF01243	Putative_PNPOx	0.92
PF04542	Sigma70_r2	0.92
PF00903	Glyoxalase	0.92
PF08281	Sigma70_r4_2	0.92
PF14294	DUF4372	0.92
PF13616	Rotamase_3	0.92
PF00106	adh_short	0.92
PF09957	VapB_antitoxin	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	4.59
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	1.83
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.83
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	1.83
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.83
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.92
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.92
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.92
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.92
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.92
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.92
COG2121	Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily	Function unknown [S]	0.92
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.92
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.92
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.92
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.92
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.92
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.92
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.27 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	10.09 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	8.26 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17.43 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.09 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8.26 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.09 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	10.09 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.83 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.92 %
Candidatus Sumerlaeota	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.09 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %
unclassified Candidatus Sumerlaeota	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota	0.92 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.92 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.09 %
Candidatus Sumerlaeota bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → Candidatus Sumerlaeota bacterium	0.92 %
Aliidongia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia	0.92 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.92 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.92 %
unclassified Acetobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.09 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	0.92 %
Aliidongia dinghuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	0.92 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.92 %
Candidatus Sumerlaeota bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → Candidatus Sumerlaeota bacterium	0.92 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.09 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.92 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	0.92 %
Aliidongia dinghuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	0.92 %
Candidatus Sumerlaeota bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → Candidatus Sumerlaeota bacterium	0.92 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.09 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.92 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	0.92 %
Aliidongia dinghuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	0.92 %
Candidatus Sumerlaeota bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → Candidatus Sumerlaeota bacterium	0.92 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_103838894	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300001593\|JGI12635J15846_10507166	Not Available	711	Open in IMG/M
3300001593\|JGI12635J15846_10608671	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300002245\|JGIcombinedJ26739_101504695	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300002906\|JGI25614J43888_10003258	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5097	Open in IMG/M
3300003219\|JGI26341J46601_10147556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300004080\|Ga0062385_11044460	Not Available	551	Open in IMG/M
3300005332\|Ga0066388_108594448	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300005437\|Ga0070710_10778213	Not Available	682	Open in IMG/M
3300005467\|Ga0070706_100519341	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300005518\|Ga0070699_101677230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	582	Open in IMG/M
3300005536\|Ga0070697_101023190	All Organisms → cellular organisms → Bacteria → Proteobacteria	734	Open in IMG/M
3300005764\|Ga0066903_100537673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1998	Open in IMG/M
3300005764\|Ga0066903_103409281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300006028\|Ga0070717_11940785	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	531	Open in IMG/M
3300006175\|Ga0070712_101340272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300006176\|Ga0070765_101834899	Not Available	568	Open in IMG/M
3300010046\|Ga0126384_12426532	Not Available	508	Open in IMG/M
3300010047\|Ga0126382_11640306	Not Available	598	Open in IMG/M
3300010047\|Ga0126382_12042995	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300010162\|Ga0131853_11379287	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300010341\|Ga0074045_10352179	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300010343\|Ga0074044_10753448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300010361\|Ga0126378_11493816	Not Available	766	Open in IMG/M
3300010361\|Ga0126378_11593945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300010376\|Ga0126381_100207491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	2625	Open in IMG/M
3300010376\|Ga0126381_100472099	All Organisms → cellular organisms → Bacteria	1763	Open in IMG/M
3300010376\|Ga0126381_100987732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1214	Open in IMG/M
3300010398\|Ga0126383_10390812	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300010398\|Ga0126383_12419517	Not Available	610	Open in IMG/M
3300012181\|Ga0153922_1098356	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012200\|Ga0137382_11045995	Not Available	585	Open in IMG/M
3300012203\|Ga0137399_10128579	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300012203\|Ga0137399_11029495	Not Available	693	Open in IMG/M
3300012922\|Ga0137394_10145139	All Organisms → cellular organisms → Bacteria	2017	Open in IMG/M
3300012951\|Ga0164300_10228410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	930	Open in IMG/M
3300012971\|Ga0126369_11967744	Not Available	673	Open in IMG/M
3300014165\|Ga0181523_10732530	Not Available	540	Open in IMG/M
3300016294\|Ga0182041_10376948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1200	Open in IMG/M
3300016294\|Ga0182041_11489011	Not Available	623	Open in IMG/M
3300016319\|Ga0182033_10855285	Not Available	804	Open in IMG/M
3300016319\|Ga0182033_11376467	Not Available	635	Open in IMG/M
3300016319\|Ga0182033_11649273	Not Available	580	Open in IMG/M
3300016341\|Ga0182035_10720013	Not Available	871	Open in IMG/M
3300016357\|Ga0182032_10730740	Not Available	833	Open in IMG/M
3300016357\|Ga0182032_10743220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	826	Open in IMG/M
3300016371\|Ga0182034_10325127	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300016371\|Ga0182034_10626063	Not Available	910	Open in IMG/M
3300016387\|Ga0182040_10104633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1929	Open in IMG/M
3300016404\|Ga0182037_10064506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2509	Open in IMG/M
3300016445\|Ga0182038_10528427	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1010	Open in IMG/M
3300016445\|Ga0182038_10814586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	819	Open in IMG/M
3300016445\|Ga0182038_11629353	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300017975\|Ga0187782_10540495	Not Available	893	Open in IMG/M
3300018053\|Ga0184626_10200570	Not Available	845	Open in IMG/M
3300018481\|Ga0190271_13764963	Not Available	508	Open in IMG/M
3300020170\|Ga0179594_10293223	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300020579\|Ga0210407_11319754	Not Available	538	Open in IMG/M
3300020581\|Ga0210399_11565934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	509	Open in IMG/M
3300021168\|Ga0210406_10946716	Not Available	645	Open in IMG/M
3300021178\|Ga0210408_11158151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	592	Open in IMG/M
3300021180\|Ga0210396_10018796	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6401	Open in IMG/M
3300021361\|Ga0213872_10321533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	639	Open in IMG/M
3300021384\|Ga0213876_10596520	Not Available	588	Open in IMG/M
3300021402\|Ga0210385_11104443	Not Available	609	Open in IMG/M
3300021403\|Ga0210397_10401460	Not Available	1025	Open in IMG/M
3300021432\|Ga0210384_10279140	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → Candidatus Sumerlaeota bacterium	1504	Open in IMG/M
3300021444\|Ga0213878_10157777	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300021444\|Ga0213878_10325210	Not Available	662	Open in IMG/M
3300021479\|Ga0210410_11044079	Not Available	707	Open in IMG/M
3300021560\|Ga0126371_10304856	Not Available	1720	Open in IMG/M
3300025906\|Ga0207699_11366200	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	524	Open in IMG/M
3300026508\|Ga0257161_1093507	Not Available	624	Open in IMG/M
3300027684\|Ga0209626_1176702	Not Available	566	Open in IMG/M
3300027825\|Ga0209039_10195020	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	825	Open in IMG/M
3300027825\|Ga0209039_10206866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300027908\|Ga0209006_11186458	Not Available	597	Open in IMG/M
3300028780\|Ga0302225_10378995	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300031564\|Ga0318573_10623833	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300031573\|Ga0310915_10016242	All Organisms → cellular organisms → Bacteria	4439	Open in IMG/M
3300031668\|Ga0318542_10771856	Not Available	504	Open in IMG/M
3300031715\|Ga0307476_10691066	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300031744\|Ga0306918_10152106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1710	Open in IMG/M
3300031744\|Ga0306918_11322483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	554	Open in IMG/M
3300031754\|Ga0307475_11066999	Not Available	633	Open in IMG/M
3300031781\|Ga0318547_10441335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	801	Open in IMG/M
3300031833\|Ga0310917_10371967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	971	Open in IMG/M
3300031879\|Ga0306919_10282803	Not Available	1255	Open in IMG/M
3300031890\|Ga0306925_10428678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1415	Open in IMG/M
3300031890\|Ga0306925_10917740	Not Available	899	Open in IMG/M
3300031897\|Ga0318520_10977696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300031910\|Ga0306923_12311315	Not Available	536	Open in IMG/M
3300031912\|Ga0306921_10245760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2096	Open in IMG/M
3300031912\|Ga0306921_10805374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1073	Open in IMG/M
3300031941\|Ga0310912_10515878	Not Available	931	Open in IMG/M
3300031941\|Ga0310912_11472928	Not Available	513	Open in IMG/M
3300031946\|Ga0310910_10697532	Not Available	802	Open in IMG/M
3300031947\|Ga0310909_10675803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	859	Open in IMG/M
3300031954\|Ga0306926_10266172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2123	Open in IMG/M
3300031954\|Ga0306926_11961349	Not Available	659	Open in IMG/M
3300031962\|Ga0307479_10390597	All Organisms → cellular organisms → Bacteria	1376	Open in IMG/M
3300031962\|Ga0307479_11545705	Not Available	620	Open in IMG/M
3300032059\|Ga0318533_10565820	Not Available	834	Open in IMG/M
3300032076\|Ga0306924_10230198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2128	Open in IMG/M
3300032076\|Ga0306924_10460754	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300032261\|Ga0306920_101289621	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300032261\|Ga0306920_101341924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1027	Open in IMG/M
3300032261\|Ga0306920_101356090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300033289\|Ga0310914_10030815	All Organisms → cellular organisms → Bacteria	4275	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.33%
Host-Associated	Host-Associated	3.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.83%
Aquatic	Environmental → Aquatic	5.50%
Plants	Host-Associated → Plants	1.83%
Arthropoda	Host-Associated → Arthropoda	0.92%
Fungi	Host-Associated → Fungi	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.91%
Freshwater	Environmental → Aquatic → Freshwater	4.59%
Sediment	Environmental → Aquatic → Sediment	0.92%
Peat	Environmental → Terrestrial → Peat	0.92%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.92%
Roots	Host-Associated → Plants → Roots	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.48%
Loam	Environmental → Terrestrial → Soil → Loam	14.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.01%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.92%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.92%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1038388941	3300000955	Soil	AGAITFQLRVWTDQYHQWAQLRSDLSVAVNDALAREKIAIA*
JGI12635J15846_105071663	3300001593	Forest Soil	RLATRAWTDRYQDWSQIRSDLSVAVNDALLRDKIAIA*
JGI12635J15846_106086712	3300001593	Forest Soil	PSPEVYVLSFTGGAVTLQLRAWTDRYQDWAQLRSDLSKAVSGVLAREKIGLT*
JGIcombinedJ26739_1015046951	3300002245	Forest Soil	VNFSSGAVTFQLRAWTDRNEEWAQLRSDLSVAVNDALAREKIAIA*
JGI25614J43888_100032581	3300002906	Grasslands Soil	FTAGAVTFQLRAWTDRYQGWAQLRSDLGVAVNDALAREKIAIA*
JGI26341J46601_101475562	3300003219	Bog Forest Soil	VTNFSAGAVTYQLRAWTDRHEDWAQLRSDLSVAVNDALAREKIAIA*
Ga0062385_110444601	3300004080	Bog Forest Soil	FSAGAVTFQLRAWTDRHEDWAQLRSDLSVAVNEALAREKIAIA*
Ga0066388_1085944482	3300005332	Tropical Forest Soil	VYVTNFSAGAVTFQLRAWIDRYEDLPQLRSDLSLAVNNALAREKIAIA*
Ga0070710_107782131	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AITYQLRAWTDRYQDWAQVRSDLAVAVNEALFKEKIAIA*
Ga0070706_1005193412	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	PQVYVVNFSAGAITFKLRFWTDLDRDWSQLQSDISIAVNDALIREKIAIA*
Ga0070699_1016772303	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	FSAGAVTFQLRAWTDRHDDWAQLHSDLSVAVNDVLAREKIAIA*
Ga0070697_1010231901	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	TNLSAGAVTFKIRAWTDRHEDWAQLRSDLSLAANEALAREKIAIA*
Ga0066903_1005376734	3300005764	Tropical Forest Soil	QLRAWTDRQEDWAQLRSDLSLAVKDALARENIAMA*
Ga0066903_1034092812	3300005764	Tropical Forest Soil	VTYQLRAWTDRQEDWAQLRSDLSLAVKDALAREKIAIT*
Ga0070717_119407851	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VLPTVVNVTAGAVTFQLRAWTDRYHEWVQLRGDLSVAVNDALAREKIAIA*
Ga0070712_1013402721	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TFQLRAWTDRHEDWAQLRSDLSLAVNEALAREKIAIA*
Ga0070765_1018348991	3300006176	Soil	VNFSAGAVTFQLRAWTDRYQDWARVRSDLAVAVNSALVEERIAIA*
Ga0126384_124265322	3300010046	Tropical Forest Soil	AGAVNFQLRAWIDRYEDLAHLRSDLSLALNNALAREKIAIA*
Ga0126382_116403061	3300010047	Tropical Forest Soil	LRAWIDRYEDMAELRSDLSLAVNKALAHEKIAIT*
Ga0126382_120429951	3300010047	Tropical Forest Soil	TFQLRAWIDRYEDSAQLRSDLSLAVNNALAREKIAIA*
Ga0131853_113792872	3300010162	Termite Gut	VYAVSFAAGATTFQLRAWTDRYQDWAQLRSDLALAVNDALGREKIALA*
Ga0074045_103521791	3300010341	Bog Forest Soil	FQLRAWTDRHEDWAQLRSDLSVAVNEALAREKIAIV*
Ga0074044_107534481	3300010343	Bog Forest Soil	TYQLRAWTDRHEDWAQLRSDLSVAVNDALAREKIAIA*
Ga0126378_114938162	3300010361	Tropical Forest Soil	TFQLRVWIDRYEDLAQLRSDLSLAAKNALARENIAIT*
Ga0126378_115939451	3300010361	Tropical Forest Soil	QLRAWIDRYEDLAQLRSDLSLEIKDALARENIAIT*
Ga0126381_1002074914	3300010376	Tropical Forest Soil	TNFSAGALTFQLRAWIDRYEDLAQLRSDLSLALNNALASEKIAIA*
Ga0126381_1004720991	3300010376	Tropical Forest Soil	AGALTFQLRVWIDRHEDLAQLRSDLSLAAKNALARENIAIA*
Ga0126381_1009877321	3300010376	Tropical Forest Soil	LTFQIRVWIDRYEDLAQLRSDLSLAAKNALARENIAIT*
Ga0126383_103908121	3300010398	Tropical Forest Soil	LRAWIDRYEDLAQLRSDLSLAVKNALARESIAIA*
Ga0126383_124195171	3300010398	Tropical Forest Soil	NFSAGAVTYQLRAWTDRQEDWAQLRSDLSLAVKDALAREKIAIT*
Ga0153922_10983561	3300012181	Attine Ant Fungus Gardens	TFQLRVWTDRSREWAQLRSDLAVAINSALAREKIAIA*
Ga0137382_110459952	3300012200	Vadose Zone Soil	FQLRVWTDRHEDWAQLRSDLSVAVNDALAREKIAIA*
Ga0137399_101285792	3300012203	Vadose Zone Soil	ALTSQLRAGTDRNEEGAQPRNGLSVAVNDALAREKIAIA*
Ga0137399_110294953	3300012203	Vadose Zone Soil	GAITFQLRVWTDQYHEWAQLRSDLSVAVNDALAREKIAIA*
Ga0137394_101451391	3300012922	Vadose Zone Soil	TAGAITFQLRVWTDQYHEWAQLRSDLSVAVNDALAREKIAIA*
Ga0164300_102284103	3300012951	Soil	ADAVTFQLRAWTDRHQDWAQVRSDLSIAINDTLARENIAIA*
Ga0126369_119677441	3300012971	Tropical Forest Soil	VSAGALTFQLRAWIDRYEDLAQLRSDLSVAVKNALARENIAIA*
Ga0181523_107325302	3300014165	Bog	QVYVLNFSAGAVTFQLRAWTDRHEDWAQLRSDLSVAVNNALAREKIAIA*
Ga0182041_103769482	3300016294	Soil	ALTFQLRAWIDRYEDLAQLRSDLSLALNNALASEKIAIA
Ga0182041_114890111	3300016294	Soil	FSAGALTFQLRAWIDRYEDLAQLRSDLSLAVKNAFARENIAIA
Ga0182033_108552853	3300016319	Soil	RHRAWIDRYEDLAQLRSDLSLAVKNALARESIAIA
Ga0182033_113764672	3300016319	Soil	TNFSAGALTFQLRAWIDRYEDLAQLRSDLSLAVNNALAREKIAIA
Ga0182033_116492731	3300016319	Soil	VTNFSAGALTFQLRAWIDRYEDLAQLRSDLSLAVNTALAREKIAIA
Ga0182035_107200133	3300016341	Soil	QLRAWTDRQEDWAQLRSDLSLAVKDALAREKIAIT
Ga0182032_107307401	3300016357	Soil	TARAVNYPLRSWTARQEDWAQLRSDLSLAVKDALAREKIAIT
Ga0182032_107432201	3300016357	Soil	VYVTNFSAGALTFQLRAWIDRYEDLAQLRSDLSLAVNNALAREKIAIT
Ga0182034_103251271	3300016371	Soil	TFQLRAWIDRYEDLAQLRSDLSLALNNALAREKIAIA
Ga0182034_106260631	3300016371	Soil	NFSAGALTFQLRAWIDRYEDLAQLRSDLSLALNNALAREKIAIA
Ga0182040_101046331	3300016387	Soil	YVTNFSAGALTFQLRAWIDRYEDLAQLRSDLSLAVNNALAREKIAIT
Ga0182037_100645061	3300016404	Soil	TFQLRAWIDRYEDLAQLRSDLSLALNNALASEKIAIA
Ga0182038_105284271	3300016445	Soil	QLRAWIDRYEDLAQLRSDLSLAVNNALAREKIAIA
Ga0182038_108145861	3300016445	Soil	AVTYQLRAWTDRQEDWAQLRSDLSLAVKDALAREKIAIT
Ga0182038_116293532	3300016445	Soil	FQLRAWIDRYEDLAQLRSDLSLALNNALASEKIAIA
Ga0187782_105404951	3300017975	Tropical Peatland	TNFSAGAVTFQLRAWTDRQEDWAQLRSDLSLAIQDALARAKIAIA
Ga0184626_102005701	3300018053	Groundwater Sediment	AVTFQLRVWTDRHEAWAQLRSDLSLAINETLSREKIAIA
Ga0190271_137649631	3300018481	Soil	APQVNVVTLTASAVTLQLRVWTDRHEAWAQLRSDLSIAINDALTREKIAIV
Ga0179594_102932231	3300020170	Vadose Zone Soil	TAGAITFQLRVWTDQYHEWAQLRSDLSVAVNDALAREKIAIA
Ga0210407_113197542	3300020579	Soil	QVYVVNISSGAVTFQLRAWTDRNEEWAQLRSDLSVAVNDALAREKIAIA
Ga0210399_115659342	3300020581	Soil	AGAVTFQLRTWTDRHEDWAQLRSDLSVAVNEALAREKIAIA
Ga0210406_109467161	3300021168	Soil	SVTFQLRAWTDRHEDWTQLRSDLAVAANEALAREKIAIA
Ga0210408_111581511	3300021178	Soil	KIRARTDRHEDWAQLRSDLSLAANEALAREKIAIA
Ga0210396_100187969	3300021180	Soil	LPTVVNVTAGAVTFQLRAWTDRYHEWVQLRGDLSVAVNDALAREKIAIA
Ga0213872_103215332	3300021361	Rhizosphere	AGALTFQIRVWIDRYEDLAQLRSDLSLAAKNALARENIAIT
Ga0213876_105965201	3300021384	Plant Roots	SFSAGVLSFQLRAWTDGDEDWAQLRSDLAVAVKDALAREQIALA
Ga0210385_111044431	3300021402	Soil	AGAVTFQLRVWTDRSRQWIQVRSDLALAVNEALARERIAIV
Ga0210397_104014601	3300021403	Soil	VTFQLRAWTDRHEDWAQLRSDLSVAVNNALAREKIAIA
Ga0210384_102791401	3300021432	Soil	QEEDGVRDTAGAVTFQRRPWTDRYQDWARVRSDLAVAVNSALVEQRIAIA
Ga0213878_101577771	3300021444	Bulk Soil	VVNFSAGAVTFQLRAWIDRYEDLAQLRSDLSVAVNNALAREKIVIA
Ga0213878_103252102	3300021444	Bulk Soil	AGAVTFQLRAWTDRYQDWARVRSDLAVAVNSALAQERIAIA
Ga0210410_110440791	3300021479	Soil	TNFSAGAVTFQLRAWTDRHEDWAQLRSDLSVAVNNALAREKIAIA
Ga0126371_103048561	3300021560	Tropical Forest Soil	QVYVINFNAGAVTYQLRAWTDRQEDWAQLRSDLSLAVKDALVREKIVIA
Ga0207699_113662002	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TFQLRAWTDRYHEWVQLRGDLSVAVNDALAREKIAIA
Ga0257161_10935071	3300026508	Soil	VNFTAGAITFQLRVWTDQYHEWAQLRSDLSIAVNDALAREKIAIA
Ga0209626_11767021	3300027684	Forest Soil	TGGAVTLQLRAWTDRYQDWAQLRSDLSKAVSGVLAREKIALT
Ga0209039_101950202	3300027825	Bog Forest Soil	FSAGAVTYQLRAWTDRHEDWAQLRSDLSVAVNDALAREKIAIA
Ga0209039_102068661	3300027825	Bog Forest Soil	FSAGAVTYQLRAWTDRHEDWAQLRSDLSVAVNEALAREKIAIA
Ga0209006_111864582	3300027908	Forest Soil	GAVTLQLRAWTDRYQDWAQLRSDLSKAVSGVLAREKIVLT
Ga0302225_103789951	3300028780	Palsa	AAGAVAFQVRAWTDRYQDWAQVRSDLSVRLGEALLREKITIV
Ga0318573_106238331	3300031564	Soil	VYAVSFAAGATTFQLRAWTDRYQDWAQLRSDLALAVNDALAREKIALA
Ga0310915_100162421	3300031573	Soil	HVYVTNFSAGALTFQLRAWIERYEDLAQLRSDLSLALNNALACEKIAIA
Ga0318542_107718561	3300031668	Soil	FQLRAWIDRYEDLAQLRSDLSLALNNALAREKIAIA
Ga0307476_106910661	3300031715	Hardwood Forest Soil	YVTSFTAGAIVFQLRAWTDRYQDWAQVRSDLALGLSDALAREKIGIA
Ga0306918_101521061	3300031744	Soil	AGAVTYQLRAWTDRQEDWAQLRSDLSLAVKDALAREKIAIA
Ga0306918_113224832	3300031744	Soil	LTFQLRAWIDRYEDLAQLRSDLSLALNNALAREKIAIA
Ga0307475_110669991	3300031754	Hardwood Forest Soil	VYVTNLSAGAVTFKIRAWTDRHEDWAQLRSDLSLAANEALAREKIAIA
Ga0318547_104413352	3300031781	Soil	FTAGAVTYQLRAWTDRQEDWAQLRSDLSLAVKDALARETIAIT
Ga0310917_103719671	3300031833	Soil	TNFSAGAVTFQLRAWIDRYEDLAQLRSDLSLAVNNALAREKIAIT
Ga0306919_102828031	3300031879	Soil	GAVSFQLRAWIDRYEDLAQLRSDLSLAVKNTLARDQIAIA
Ga0306925_104286781	3300031890	Soil	AGAVTYQLRAWTDRQEDWAQLRSDLSLAVKDALAREKIAMV
Ga0306925_109177401	3300031890	Soil	AGALTFQLRAWIDRYEDLAQLRSDLSLAVKNALARENIAIA
Ga0318520_109776961	3300031897	Soil	VYVTSFTAGAVTYQLRAWTDRQEDWAQLRSDLSLAVKDALARETIAIT
Ga0306923_123113152	3300031910	Soil	FQLRAWIDRYEDLAQLRSDLSLEVKGALARENIAIA
Ga0306921_102457601	3300031912	Soil	GALTFQLRAWIDRYEDLAQLRSDLSLALNNALASEKIAIA
Ga0306921_108053742	3300031912	Soil	LTFQLRVWIDRYEDLAQLRSDLSLAAKNALARENIAIA
Ga0310912_105158782	3300031941	Soil	FQLRAWIDRYEDLAQLRSDLSLAVKNALARENVAIA
Ga0310912_114729281	3300031941	Soil	FSAGALTFQLRAWIDRYEDLAQLRSDLSLAVKNALARENIAIA
Ga0310910_106975321	3300031946	Soil	LSFRLRAWIDRYEDLAQLRSDLSLAVKNALARESIAIA
Ga0310909_106758031	3300031947	Soil	SAGAVTYQLRAWTDRQEDWAQLRSDLSLAVKDALAREKIAIA
Ga0306926_102661722	3300031954	Soil	LTFQLRAWIDRYEDLAQLRSDLSLALNNALASEKIAIA
Ga0306926_119613493	3300031954	Soil	YITNFSAGALSFRLRAWIDRYEDLAQLRSDLSLAVKNALARESIAIA
Ga0307479_103905971	3300031962	Hardwood Forest Soil	VTFQLRAWIDRYEDLAQLRSDLSVAVNDALARDKIAIA
Ga0307479_115457051	3300031962	Hardwood Forest Soil	VTFQLRAWTDRYQDWARVRSDLAVAVNSALVEERIAIA
Ga0318533_105658202	3300032059	Soil	SAGALTFQLRAWIDRYEDLAQLRSDLSLEVKNALARENIAIA
Ga0306924_102301982	3300032076	Soil	QLRAWIDRYEDLAQLRSDLSLALNNALASEKIAIA
Ga0306924_104607541	3300032076	Soil	TNFSAGALTFQLRAWIDRYEDLAQLRSDLSLALNNALAREKIAIA
Ga0306920_1012896211	3300032261	Soil	PSPHVYVTNFSAGALTFQLRAWIDRYEDLAQLRSDLSLALNTALAREKIAIA
Ga0306920_1013419243	3300032261	Soil	NFSAGAVTYQLRAWTDRQEDWAQLRSDLSLAVKDALAREKIAIA
Ga0306920_1013560902	3300032261	Soil	SAGALTFQLRVWIDRYEDLAQLRSDLSLALNNALAREKIAIA
Ga0310914_100308157	3300033289	Soil	HVYVTNFSAGALTFQLRAWIERYEDLAQLRSDLSLALNNALAREKIAIA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089245

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences