Basic Information | |
---|---|
Family ID | F089197 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 109 |
Average Sequence Length | 43 residues |
Representative Sequence | SPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK |
Number of Associated Samples | 82 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.92 % |
% of genes near scaffold ends (potentially truncated) | 99.08 % |
% of genes from short scaffolds (< 2000 bps) | 90.83 % |
Associated GOLD sequencing projects | 76 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.17 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (67.890 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.431 % of family members) |
Environment Ontology (ENVO) | Unclassified (26.606 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.541 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 5.71% β-sheet: 0.00% Coil/Unstructured: 94.29% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.17 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Freshwater Sediment Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Surface Soil Peatlands Soil Agricultural Soil Arctic Peat Soil Soil Forest Soil Hardwood Forest Soil Forest Soil Soil Agricultural Soil Switchgrass Rhizosphere Miscanthus Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12053J15887_103895422 | 3300001661 | Forest Soil | LEPTWEIAEWFCVIDEDEAYDEVVRKPAGVAPSPK* |
Ga0058899_119358482 | 3300004631 | Forest Soil | PKLHKLEPSWEFGEWFCVVDETKTYDDVVRKPAGDAPPSHK* |
Ga0070714_1017871421 | 3300005435 | Agricultural Soil | KPWVSPPKLHKLEPGWEIAEWFCVLDENKDYDNVVRKPAGVAPASK* |
Ga0070731_105190742 | 3300005538 | Surface Soil | EPGWELAEWFCVLDENHDYDQVVRKPAGVAPEQGK* |
Ga0070733_107207261 | 3300005541 | Surface Soil | KLHKLEPGWEIAEWFCVLDEDKTYDDAVRKPAGIAPAK* |
Ga0070766_102472612 | 3300005921 | Soil | SPPKLHKLEPTWEFGEWFCIVDESEDYDKSVRKPAGNTSPSQK* |
Ga0075028_1000054156 | 3300006050 | Watersheds | KLHKLEPGWEIAEWFCVLDEHEAYDDAVRKPAGVAPATAK* |
Ga0075028_1000943093 | 3300006050 | Watersheds | LEPTWEIAEWFCVIEEENAYSDVIRKPAGGISTDPK* |
Ga0075029_1006028461 | 3300006052 | Watersheds | VWVSPPKLHKLEPKWEIAEWFCASSEIQTYDKDVRKPSGGATTEPK* |
Ga0075017_1001105341 | 3300006059 | Watersheds | YTKVWVSPPKLHKLEPKWEIAEWFCASSELQTYDKDVRKPSGGVSTAPNQ* |
Ga0075019_109513561 | 3300006086 | Watersheds | SPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK* |
Ga0075015_1003109481 | 3300006102 | Watersheds | PPQKFKLEPNWEIAEFFCIVDEENNYGDAVRKPAGVAPK* |
Ga0075030_1002528251 | 3300006162 | Watersheds | AKWVSPPKLHKLEPKWEIGEWFCAASENLVYDKDVRKPSGGITEPAK* |
Ga0070765_1005343532 | 3300006176 | Soil | EPGWEIAEWFCVLDEDKAYDNAVRKPAGVAPAPK* |
Ga0070765_1013479222 | 3300006176 | Soil | HKLEPSWEFGEWFCVVDETKTYDDVVRKPAGGAPPTPK* |
Ga0070765_1018117292 | 3300006176 | Soil | YTKEWVSPPKRHKLEPTWEIAEWFCASSELQTYDKDVRKPSGGAPSVPGK* |
Ga0075021_108892961 | 3300006354 | Watersheds | KLEPGWEIAEWFCVLDENKGYDQTVRKPAGVAPSSK* |
Ga0079220_105911691 | 3300006806 | Agricultural Soil | PPKLHKLEPTWEIAEWFCATSEEQTYDEQVRKPSGAAPQPK* |
Ga0099793_103574352 | 3300007258 | Vadose Zone Soil | KTWVNPPKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSPTPK* |
Ga0105248_125381621 | 3300009177 | Switchgrass Rhizosphere | PWVSPPKMHKLEPGWELAEWFCVLDENKDYDQVVRKPAGVAPNSK* |
Ga0105248_127949501 | 3300009177 | Switchgrass Rhizosphere | KLHKLEPGWQIAEWFCVPDEDNAYDEVVRKPAGVAPGHK* |
Ga0116222_11784402 | 3300009521 | Peatlands Soil | RHKLEPGWEIAEWFCAVEEDKAYDEVVRKPAGVAPKK* |
Ga0116222_12350001 | 3300009521 | Peatlands Soil | KLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK* |
Ga0126373_132560911 | 3300010048 | Tropical Forest Soil | TKPWVSPPKLHKLEPGWEIAEWFCVVDEDNAYDNAVRKPAGVAPAHK* |
Ga0126378_120447661 | 3300010361 | Tropical Forest Soil | YKLEPGWEIAEWFCIPDEDKSYDDSVRKPAGVAPAPK* |
Ga0136449_1000414081 | 3300010379 | Peatlands Soil | LHKLEPGWELSEWFCVQDEHNAYDESVRKPAGVAPTRK* |
Ga0136449_1000991707 | 3300010379 | Peatlands Soil | KLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK* |
Ga0136449_1004289543 | 3300010379 | Peatlands Soil | RFKLEPSWEIAEFFCVVDEENSYGDAVRKPAGVVPAPK* |
Ga0136449_1009552383 | 3300010379 | Peatlands Soil | AYTKPWVSPPKLHKLEPGWEIAEWFCVLDEDKAYDDAVRKPAGVAPSK* |
Ga0136449_1017325461 | 3300010379 | Peatlands Soil | SPPKLHKLEQGWEIAEWFCVLDEDKAYDDVVRKPAGVAPAPNK* |
Ga0134124_115469711 | 3300010397 | Terrestrial Soil | KPWVSPPKLHKLEPGWELAEWFCILDENKDYDQVVRKPAGVAPNSK* |
Ga0150983_155066221 | 3300011120 | Forest Soil | KLHKLEPNWEIAEWFCVIEEENAYSDTIRKPAGGISTAPK* |
Ga0137391_101778132 | 3300011270 | Vadose Zone Soil | MKIEEVKETKEKTWACPPKLHKVEPGWEIAEWFCFLDENRDYDQVVRKPAGVAPESK* |
Ga0137393_112500311 | 3300011271 | Vadose Zone Soil | EPTWEIAQWFCVIEEENTYSDTIRKPAGGFSTTPK* |
Ga0137383_108091491 | 3300012199 | Vadose Zone Soil | KLHKLEPTWELAEWFCVPDEHNAYDDVVRKPAGVSPSPK* |
Ga0137362_101863241 | 3300012205 | Vadose Zone Soil | PKLHKLEPTWEIAEWFCVIDEDKAYDEVVRKPAGVAPSPR* |
Ga0137377_112706482 | 3300012211 | Vadose Zone Soil | TWVNPPKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSPTPK* |
Ga0137360_114455511 | 3300012361 | Vadose Zone Soil | TKPWVSPPKLHKLEPTWELAEWFCVQGEHNAYDEVVRKPAGVSPTPK* |
Ga0137361_106475882 | 3300012362 | Vadose Zone Soil | SYTKVWVSPPKLHKLEPTWEIAEWFCATSEEQAYDEQVRKPSGVAPPSK* |
Ga0137390_104030812 | 3300012363 | Vadose Zone Soil | WVSPPKLHKLEPKWEIAEWFCAASELQTYDKDVRKPSGGGTIAPKQ* |
Ga0137390_109730941 | 3300012363 | Vadose Zone Soil | PKLHKLEPGWELAEWFCVQDEHNAYDESVRKPAGASPAKK* |
Ga0137358_110071731 | 3300012582 | Vadose Zone Soil | KTWVNPPKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSATPK* |
Ga0137416_106593111 | 3300012927 | Vadose Zone Soil | KVWVSPPKLHKLEPTWEIAEWFCAISEEQAYDEQVRKPSGVAASPGK* |
Ga0137410_108146202 | 3300012944 | Vadose Zone Soil | SYTKVWVSPPKLHKLEPAWEIAEWFCVLDEDKAYDEVVRKPAGVSPSPK* |
Ga0137410_116347712 | 3300012944 | Vadose Zone Soil | PKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSPTPK* |
Ga0126369_123430491 | 3300012971 | Tropical Forest Soil | KPWVNPPKLHKLEPGWEIAEWFCVIDEENAYSEAVRKPAGGAPK* |
Ga0137411_10189471 | 3300015052 | Vadose Zone Soil | KLEPAWEIAEWFCVMEEENAYSDAIRKPAGGISTVPK* |
Ga0137412_100161275 | 3300015242 | Vadose Zone Soil | PKLHKLDTMWEIAEWFCVIDHENAYGDAVRKPAGISPTPK* |
Ga0137409_103510721 | 3300015245 | Vadose Zone Soil | PKSYTKVWVSPPKLHKLEPAWEIAEWFCVLDEDKAYDEVVRKPAGVSPSPK* |
Ga0187818_101483401 | 3300017823 | Freshwater Sediment | PWVSPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK |
Ga0187818_102207801 | 3300017823 | Freshwater Sediment | TKTWVSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGVAPTLNK |
Ga0187818_105386742 | 3300017823 | Freshwater Sediment | KAYTKTWVSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK |
Ga0187807_10333643 | 3300017926 | Freshwater Sediment | VNPPKLHKLEPTWEIAEWFCVIEEENAYGDAIRKPAGGISTAPK |
Ga0187807_12849931 | 3300017926 | Freshwater Sediment | SPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK |
Ga0187824_101525741 | 3300017927 | Freshwater Sediment | PPRLHKLEPTWEIAEWFCVIEEENAYSDVVRKPAGGISTAPK |
Ga0187824_101971121 | 3300017927 | Freshwater Sediment | KLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK |
Ga0187824_102066241 | 3300017927 | Freshwater Sediment | PKLHKLEPGWEIAEWFCVLDEDKAYDDAVRKPAGVAPTSKK |
Ga0187806_13716421 | 3300017928 | Freshwater Sediment | TKPWVSPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK |
Ga0187808_100221321 | 3300017942 | Freshwater Sediment | KLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK |
Ga0187808_101245021 | 3300017942 | Freshwater Sediment | LHKLEPGWEIAEWFCVNDEDKSYDETVRKPAGVTPAYNK |
Ga0187819_102451942 | 3300017943 | Freshwater Sediment | VSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPMPTK |
Ga0187817_105183632 | 3300017955 | Freshwater Sediment | YTKTWVSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK |
Ga0187823_102201212 | 3300017993 | Freshwater Sediment | SYTKVWVSPPKLHKLEPGWEIAEWFCVNDEDKSYDETVRKPAGVAPAYNK |
Ga0187816_100991231 | 3300017995 | Freshwater Sediment | LHKLEPAWEIAEWFCVLDEDKAYDEVVRKPAGLAPAANK |
Ga0187804_103964032 | 3300018006 | Freshwater Sediment | AYTKTWVSPPKLHKLEPAWEIAEWFCVLDEDKAYDEVVRKPAGLAPAANK |
Ga0187804_104130642 | 3300018006 | Freshwater Sediment | WVSPPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGGAPASNK |
Ga0187805_106439052 | 3300018007 | Freshwater Sediment | PPKLHKLEPTWEIAEWFCVLDEDKAYDDVVRKPAGVAPAPEK |
Ga0210407_104063582 | 3300020579 | Soil | VSPPKLHKLEPGWELAEWFCVQDEHNAYDQSVRKPAGASPTKK |
Ga0210407_104718381 | 3300020579 | Soil | RPWVGPPKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVVPASK |
Ga0210407_110696401 | 3300020579 | Soil | KVWVSPPKLHKLEPKWEIAEWFCASSELQTYDKDVRKPSGGSTDPKK |
Ga0210403_107112771 | 3300020580 | Soil | PKLHKLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPAPK |
Ga0210400_109599922 | 3300021170 | Soil | KLHKLEPGWEIAEWFCVLEEDKAYDEVVRKPAGIAPTTK |
Ga0210396_102611813 | 3300021180 | Soil | ISPPKLHKLEPGWEIAEWFCVPDEDNAYDDAVRKPAGVAPKSR |
Ga0210385_114175931 | 3300021402 | Soil | AYTKTWVSPPKLHKLESSWEFGEWFCVVEETKTYDDVVRKPAGDAPPMRK |
Ga0210386_108851452 | 3300021406 | Soil | TEKWVSPPKLHKLEPKWEIGEWFCAASENQVYDKDVRKPSGGITEPTK |
Ga0210394_103094031 | 3300021420 | Soil | TWVSPPKLHKLEPGWEIAEWFCVLDEDQAYDDVVRKPAGVAPATKK |
Ga0210402_103692402 | 3300021478 | Soil | VWTSPPKLYKHEPGWEIAEWFCIADEDKSYDNTVRKPAGVAPASK |
Ga0210402_112272202 | 3300021478 | Soil | NPPKLHKLEPKWEIAEWFCVIEEENAYSDAIRKPAGGISTAPK |
Ga0210402_112399672 | 3300021478 | Soil | HKLEPTWELAEWPCVIEETKDYDETVRKPAGDASPARVQ |
Ga0210410_101416771 | 3300021479 | Soil | SYTKVWVSPPKLHKLEPKWEIAEWFCASSELQTYDKDVRKPSGGNVTEPKK |
Ga0126371_104047303 | 3300021560 | Tropical Forest Soil | EPGWEIAEWFCVIDEEKAYSEAVRKPAGIAPATKP |
Ga0208589_11260602 | 3300025634 | Arctic Peat Soil | PPKLHKLEPKWEIGEWFCAASENQVYDKDVRKPSGAVDEPAK |
Ga0207687_101214114 | 3300025927 | Miscanthus Rhizosphere | LEPGWQIAEWFCVPDEDNAYDEVVRKPAGVAPGHK |
Ga0257149_10166562 | 3300026355 | Soil | SPPKLHKLEPTWEIAEWFCVIDEDKAYDEVVRKPAGVAPSPR |
Ga0257167_10144911 | 3300026376 | Soil | KLHKLEPTWEIAEWFCVIDEDKAYDEVVRKPAGVAPSPR |
Ga0179587_107652852 | 3300026557 | Vadose Zone Soil | KLHKLEPGWEIAEWFCILDEDNAYDQVVRKPAGVAPKSK |
Ga0209731_10488381 | 3300027326 | Forest Soil | NPPKLHKLEPGWEIAEWFCVIDEENAYSEAIRKPAGIAPEKK |
Ga0208565_10420831 | 3300027662 | Peatlands Soil | VWVSPPKLHKLEPKWEIAEWFCASSELQTYDKDVRKPSGGGTTAPSK |
Ga0208990_10222241 | 3300027663 | Forest Soil | PKLHKLEPMWEIAEWFCVIDDENAYGDAVRKPAGVSPTPK |
Ga0208991_10375852 | 3300027681 | Forest Soil | KLHKLEPTWEIAEWFCVIDEDKAYDEVVRKPAGVAPSPK |
Ga0209060_105286321 | 3300027826 | Surface Soil | KFKLEPNWEIAEFFCIVDEENTYGDAVRKPAGVAPKK |
Ga0209580_104783481 | 3300027842 | Surface Soil | KLHKLEPGWELAEWFCVQDEHNAYDDAVRKPAGVSAPPK |
Ga0209579_103540162 | 3300027869 | Surface Soil | LEPGWELAEWFCVLDENHDYDQVVRKPAGVAPEQGK |
Ga0209380_104599662 | 3300027889 | Soil | LHKLEPGWEIAEWFCVLDEDKAYDEAVRKPAGVAPTPNK |
Ga0209068_101285082 | 3300027894 | Watersheds | PWVSPPKLHKLEPGWEIAEWFCVLDENQGYDQVVRKPAGVAPASK |
Ga0209624_104334451 | 3300027895 | Forest Soil | VSPPKLHKLKPTWEFGEWFCIADETEGYDQSVRKPAGGDSPLH |
Ga0209488_101382773 | 3300027903 | Vadose Zone Soil | WVSPPKLHKLEPTWEIAEWFCATSEEQTYDEQVRKPSGVAPGPDK |
Ga0209415_104563981 | 3300027905 | Peatlands Soil | WVSPPKLHKLEPGWELAEWFCVLDENKDYDQVVRKPAGVAPASK |
Ga0209415_105167312 | 3300027905 | Peatlands Soil | IWVNPPKLHKLEPMWEIAEWFCVIEEENAYSDAIRKPAGGISIAPK |
Ga0209415_105850982 | 3300027905 | Peatlands Soil | TKPWVSPPKLHKLEPGWELSEWFCVQDEHNAYDESVRKPAGVAPTRK |
Ga0170823_162940232 | 3300031128 | Forest Soil | MYTKPWVSPPKLHKLEPGWELAEWFCVLDENHDYDQVVRKPAGVAPASGK |
Ga0310686_1083764851 | 3300031708 | Soil | KAYSKPWVSPPKLHKLEPGWELSEWFCVQDEHNAYDESVRKPAGVSPARK |
Ga0307477_106814552 | 3300031753 | Hardwood Forest Soil | TKLWVSPPKLHKLEPTWEIAEWFCIVDEEHAYSDTVRIPAGTPPAGRK |
Ga0307477_108990611 | 3300031753 | Hardwood Forest Soil | PPKLHKLEPGWEIAEWFCVIDEENAYSEAIRKPAGIAPEKK |
Ga0307475_114128592 | 3300031754 | Hardwood Forest Soil | TKPWVSPPKLHKLEPGWEIAEWFCVLDENKDYDQTVRKPAGVAPALK |
Ga0307479_121282801 | 3300031962 | Hardwood Forest Soil | NPPKLHKLEPTWEIAEWFCVIEEENTYSDAVRKPAGGISTAPK |
Ga0311301_100728531 | 3300032160 | Peatlands Soil | SPTKLHKLEPGWEIAEWFCVLDEDKAYDDAVRKPAGVAPSK |
Ga0311301_1007285311 | 3300032160 | Peatlands Soil | TKPWVSPPKLHRLEPGWEIAEWFCVLDENKDYDQVVRKPAGVAPASK |
Ga0311301_121731681 | 3300032160 | Peatlands Soil | TKPWVSPPKLHKLEPGWEIAEWFCAVEEDKAYDEVVRKPAGVAPKK |
⦗Top⦘ |