Metagenome / Metatranscriptome Family F089193

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089193
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	48 residues
Representative Sequence	ITDAYRDRVDWYARYGFVALEGAAESGPQRMFLDIRTIRMALKGTQ
Number of Associated Samples	93
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	83.49 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.578 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (11.927 % of family members)
Environment Ontology (ENVO)	Unclassified (22.018 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.73% β-sheet: 8.11% Coil/Unstructured: 62.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01381	HTH_3	4.59
PF12704	MacB_PCD	3.67
PF01790	LGT	1.83
PF00589	Phage_integrase	1.83
PF07676	PD40	1.83
PF01872	RibD_C	1.83
PF01797	Y1_Tnp	1.83
PF01850	PIN	0.92
PF07994	NAD_binding_5	0.92
PF14522	Cytochrome_C7	0.92
PF12543	DUF3738	0.92
PF00593	TonB_dep_Rec	0.92
PF00437	T2SSE	0.92
PF00834	Ribul_P_3_epim	0.92
PF00069	Pkinase	0.92
PF13447	Multi-haem_cyto	0.92
PF00487	FA_desaturase	0.92
PF00884	Sulfatase	0.92
PF01370	Epimerase	0.92
PF01396	zf-C4_Topoisom	0.92
PF02558	ApbA	0.92
PF02482	Ribosomal_S30AE	0.92
PF13517	FG-GAP_3	0.92
PF13744	HTH_37	0.92
PF13419	HAD_2	0.92
PF02954	HTH_8	0.92
PF13360	PQQ_2	0.92
PF09722	Xre_MbcA_ParS_C	0.92
PF16363	GDP_Man_Dehyd	0.92
PF03572	Peptidase_S41	0.92
PF08281	Sigma70_r4_2	0.92
PF06202	GDE_C	0.92
PF13592	HTH_33	0.92
PF13561	adh_short_C2	0.92
PF00196	GerE	0.92
PF00106	adh_short	0.92
PF00072	Response_reg	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.67
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.83
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	1.83
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	1.83
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.83
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	0.92
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG1260	Myo-inositol-1-phosphate synthase	Lipid transport and metabolism [I]	0.92
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.92
COG1544	Ribosome-associated translation inhibitor RaiA	Translation, ribosomal structure and biogenesis [J]	0.92
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.92
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	65.14 %
Unclassified	root	N/A	6.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.01 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.01 %
Unclassified	root	N/A	6.42 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.01 %
Unclassified	root	N/A	6.42 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.59 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.75 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.92 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.01 %
Unclassified	root	N/A	6.42 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.59 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.92 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.92 %
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.92 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.01 %
Unclassified	root	N/A	6.42 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.83 %
unclassified Anaerolineales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %
unclassified Nitrospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae	0.92 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.01 %
Unclassified	root	N/A	6.42 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.92 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.92 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.92 %
Anaerolineales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	0.92 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10176418	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300000567\|JGI12270J11330_10241537	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300002245\|JGIcombinedJ26739_101800964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300004092\|Ga0062389_103058710	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005178\|Ga0066688_10086742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1889	Open in IMG/M
3300005178\|Ga0066688_10194382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1286	Open in IMG/M
3300005561\|Ga0066699_10022866	All Organisms → cellular organisms → Bacteria → Proteobacteria	3472	Open in IMG/M
3300005598\|Ga0066706_10026054	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3654	Open in IMG/M
3300005712\|Ga0070764_10786206	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300006162\|Ga0075030_100888582	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300006176\|Ga0070765_100710112	All Organisms → cellular organisms → Bacteria → Acidobacteria	950	Open in IMG/M
3300006176\|Ga0070765_101289964	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300006794\|Ga0066658_10024502	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300006794\|Ga0066658_10101413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1364	Open in IMG/M
3300006794\|Ga0066658_10324075	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300006797\|Ga0066659_10019708	All Organisms → cellular organisms → Bacteria	3834	Open in IMG/M
3300006800\|Ga0066660_11397054	Not Available	549	Open in IMG/M
3300006852\|Ga0075433_11868277	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300007265\|Ga0099794_10328593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300009098\|Ga0105245_12524704	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300009137\|Ga0066709_102823709	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	643	Open in IMG/M
3300009524\|Ga0116225_1328469	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300009762\|Ga0116130_1285519	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300009839\|Ga0116223_10796982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	540	Open in IMG/M
3300010321\|Ga0134067_10018386	All Organisms → cellular organisms → Bacteria → Acidobacteria	2077	Open in IMG/M
3300010322\|Ga0134084_10408164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300010339\|Ga0074046_10242685	Not Available	1120	Open in IMG/M
3300010343\|Ga0074044_10579107	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300010358\|Ga0126370_11303725	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300010360\|Ga0126372_10363343	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300010361\|Ga0126378_10123712	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2596	Open in IMG/M
3300010361\|Ga0126378_11470861	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300010379\|Ga0136449_100019056	All Organisms → cellular organisms → Bacteria	17710	Open in IMG/M
3300010379\|Ga0136449_101044880	Not Available	1308	Open in IMG/M
3300010379\|Ga0136449_103349959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	615	Open in IMG/M
3300010398\|Ga0126383_10064772	All Organisms → cellular organisms → Bacteria	3114	Open in IMG/M
3300011270\|Ga0137391_11261674	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	586	Open in IMG/M
3300011270\|Ga0137391_11551172	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300012198\|Ga0137364_10021785	All Organisms → cellular organisms → Bacteria	3955	Open in IMG/M
3300012198\|Ga0137364_10069888	All Organisms → cellular organisms → Bacteria	2399	Open in IMG/M
3300012200\|Ga0137382_10530063	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300012202\|Ga0137363_10381922	Not Available	1171	Open in IMG/M
3300012208\|Ga0137376_10846242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300012211\|Ga0137377_10577388	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300012211\|Ga0137377_11489258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300012285\|Ga0137370_10031515	All Organisms → cellular organisms → Bacteria → Proteobacteria	2758	Open in IMG/M
3300014155\|Ga0181524_10019980	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4941	Open in IMG/M
3300014491\|Ga0182014_10172148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1197	Open in IMG/M
3300014495\|Ga0182015_10284632	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300014501\|Ga0182024_11669863	All Organisms → cellular organisms → Bacteria → Acidobacteria	719	Open in IMG/M
3300016404\|Ga0182037_11666909	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300016750\|Ga0181505_10515066	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1074	Open in IMG/M
3300017656\|Ga0134112_10223288	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300017925\|Ga0187856_1192293	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300017935\|Ga0187848_10236988	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
3300017936\|Ga0187821_10035992	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300017946\|Ga0187879_10583081	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300017955\|Ga0187817_10529736	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300017966\|Ga0187776_10797288	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300017988\|Ga0181520_11025051	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300017996\|Ga0187891_1118550	All Organisms → cellular organisms → Bacteria → Acidobacteria	976	Open in IMG/M
3300018006\|Ga0187804_10563491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300018016\|Ga0187880_1418905	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300018024\|Ga0187881_10320421	All Organisms → cellular organisms → Bacteria → Acidobacteria	641	Open in IMG/M
3300018024\|Ga0187881_10377356	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300018034\|Ga0187863_10796481	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300018035\|Ga0187875_10701859	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300018042\|Ga0187871_10347440	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300018043\|Ga0187887_10877998	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300018046\|Ga0187851_10247988	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300018058\|Ga0187766_10099657	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300020579\|Ga0210407_11011315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300020583\|Ga0210401_10203302	All Organisms → cellular organisms → Bacteria → Acidobacteria	1838	Open in IMG/M
3300021086\|Ga0179596_10472048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300021168\|Ga0210406_10058359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3354	Open in IMG/M
3300021178\|Ga0210408_11455837	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300021374\|Ga0213881_10182341	Not Available	925	Open in IMG/M
3300021559\|Ga0210409_10106227	All Organisms → cellular organisms → Bacteria → Acidobacteria	2587	Open in IMG/M
3300023255\|Ga0224547_1057206	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300026314\|Ga0209268_1024718	All Organisms → cellular organisms → Bacteria → Acidobacteria	2137	Open in IMG/M
3300026490\|Ga0257153_1113243	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300026532\|Ga0209160_1153484	All Organisms → cellular organisms → Bacteria → Acidobacteria	1048	Open in IMG/M
3300026551\|Ga0209648_10636266	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300027064\|Ga0208724_1002776	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300027326\|Ga0209731_1027839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300027748\|Ga0209689_1102304	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300028047\|Ga0209526_10697222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300028806\|Ga0302221_10272676	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300028863\|Ga0302218_10299392	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300029913\|Ga0311362_11046829	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300029988\|Ga0302190_10095660	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300029999\|Ga0311339_11008493	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	779	Open in IMG/M
3300029999\|Ga0311339_11474290	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300030007\|Ga0311338_11533243	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300031028\|Ga0302180_10384619	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	705	Open in IMG/M
3300031236\|Ga0302324_103168821	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300031524\|Ga0302320_11148248	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300031524\|Ga0302320_11509737	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300031524\|Ga0302320_11675946	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	614	Open in IMG/M
3300031562\|Ga0310886_11142888	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300031715\|Ga0307476_10318479	All Organisms → cellular organisms → Bacteria → Acidobacteria	1142	Open in IMG/M
3300031938\|Ga0308175_101754950	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	695	Open in IMG/M
3300032160\|Ga0311301_11562334	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300032180\|Ga0307471_100059421	All Organisms → cellular organisms → Bacteria	3217	Open in IMG/M
3300032677\|Ga0316227_1255198	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300032805\|Ga0335078_10250133	All Organisms → cellular organisms → Bacteria	2420	Open in IMG/M
3300032805\|Ga0335078_12151773	Not Available	590	Open in IMG/M
3300032892\|Ga0335081_10845650	Not Available	1087	Open in IMG/M
3300034065\|Ga0334827_004462	All Organisms → cellular organisms → Bacteria	6627	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.98%
Aquatic	Environmental → Aquatic	20.18%
Plants	Host-Associated → Plants	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.22%
Freshwater	Environmental → Aquatic → Freshwater	19.27%
Peat	Environmental → Terrestrial → Peat	12.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Sediment	Environmental → Aquatic → Sediment	0.92%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.17%
Loam	Environmental → Terrestrial → Soil → Loam	6.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.42%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.01%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.34%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.59%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.83%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.92%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029988	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_3	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032677	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101764181	3300000567	Peatlands Soil	DAYRDRVAWYARYGFVPIEGGVETAPQRMFLDMRTIRAAFRS*
JGI12270J11330_102415371	3300000567	Peatlands Soil	IADVYHDRLDWYARYGFVALEGGVPGGPQRMFLDLRTVRMALKGGGSTH*
JGIcombinedJ26739_1018009642	3300002245	Forest Soil	VDWYARYGFVALEGAAESGPQRTFLDIRTIRTALKDPR*
Ga0062389_1030587101	3300004092	Bog Forest Soil	SLRVADDVGCRCIITDAYRDRVDWYARYGFVAMEGAAESGPQRMFLDIQTIRMARKTPR*
Ga0066688_100867422	3300005178	Soil	DRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSH*
Ga0066688_101943822	3300005178	Soil	DRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0066699_100228667	3300005561	Soil	ARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0066706_100260541	3300005598	Soil	TDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSH*
Ga0070764_107862062	3300005712	Soil	AYRDRVSWYARYGFVLIEGGAPTGPQRMFLDLRTIRAALPR*
Ga0075030_1008885822	3300006162	Watersheds	DAYRNRVDWYARYGFVALEGASESGPQRMFLDMRTIRMALKGTQ*
Ga0070765_1007101122	3300006176	Soil	DAYRDRMSWYARYGFIPIEGAAGEGPQRMFLDIRTIRKALQSQL*
Ga0070765_1012899642	3300006176	Soil	RDQIDWYARYGFVALEGAAESGPQRMFLDIRTVRMARGSSHS*
Ga0066658_100245021	3300006794	Soil	TTDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0066658_101014133	3300006794	Soil	ADDVGCRCIITDAYRDRVDWYARYGFVALEGAAESGPQRMFLDIRTIRMALKGAQ*
Ga0066658_103240751	3300006794	Soil	TTDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKRSQ*
Ga0066659_100197081	3300006797	Soil	RVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0066660_113970542	3300006800	Soil	DAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0075433_118682771	3300006852	Populus Rhizosphere	RCIITDAYRDRVSWYARYGFVPIEGAEAKGPQRMFLDVRTIRAALPR*
Ga0099794_103285932	3300007265	Vadose Zone Soil	DDVGCRCIITEAYRDRVDWYARYGFVALEGAAESGPQRMFLDIRTIRMALKDPR*
Ga0105245_125247041	3300009098	Miscanthus Rhizosphere	RCVITDAYGDRVSWYARYGFVPIEGTAQSGPQRMFLDIRTVRAALLR*
Ga0066709_1028237092	3300009137	Grasslands Soil	IGWYARYGFVPVEGAGEAGPQGMFLDVRTIRAALAR*
Ga0116225_13284691	3300009524	Peatlands Soil	EVGCRAIVTDAYPDRIGWYARYGFVPIEGTSDTGPQRMYLDLRTVRAALRG*
Ga0116130_12855191	3300009762	Peatland	TDAYWDRISWYAQYGFVPIEGAAENAPQRMFLDLRTVRAALRR*
Ga0116223_107969821	3300009839	Peatlands Soil	VGCRAIVTDAYRDRIGWYARYGFVPIEGAAETGPQKMFLDLRTVRTALRR*
Ga0134067_100183864	3300010321	Grasslands Soil	GCRCIITDAYRDRVDWYARYGFVALEGAAESGPQRMFLDIRTIRMALKGTQ*
Ga0134084_104081642	3300010322	Grasslands Soil	RVADAMGCRCIITDAYRDRVDWYARYGFVALEGAAESGPQRMFLDIRTIRMALKGTQ*
Ga0074046_102426852	3300010339	Bog Forest Soil	DDVGCRCIIADVYPDRIDWYARYGFVALEGSAPSGPQRMFLDIRTVRMALRGSP*
Ga0074044_105791072	3300010343	Bog Forest Soil	IDWYARYGFVALEGAAESDPQRMFLDLRTIRRARKGPQ*
Ga0126370_113037251	3300010358	Tropical Forest Soil	EVGCRCIITDAYPDRISWYAKYGFVPIEGVAEGGPQRMFLDVRTVRAALQH*
Ga0126372_103633432	3300010360	Tropical Forest Soil	IITDAYRDRVDWYARSGFVALEGAAEGGPQRMFLDIRTIRLALKTSQ*
Ga0126378_101237123	3300010361	Tropical Forest Soil	DWYARYGFVPLEGAAAGGPQRMFLDIRTIRMALKAPGH*
Ga0126378_114708612	3300010361	Tropical Forest Soil	GCRCIITDAYRDRISWYAKYGFVPIEGAAHDGPQRMFLDIRTIRAALKR*
Ga0136449_10001905612	3300010379	Peatlands Soil	AIVTDAYRDRIGWYARYGFVPIEGAAETGPQKMFLDLRTVRAALRR*
Ga0136449_1010448802	3300010379	Peatlands Soil	LGVADDVGCRGIIADAYRDRIDWYAHYGFVALEGEAPSGPQRMFLDIRTLRMARKGPA*
Ga0136449_1033499591	3300010379	Peatlands Soil	AIVTDAYRDRIGWYARYGFVPIEGAAETGPQKMFLDLRTVRTAFRR*
Ga0126383_100647721	3300010398	Tropical Forest Soil	RVADDVGCRCIITDAYRDKVDWYARYGFVALEGAAQGGPQRMFLDIRTIRQALKASQ*
Ga0137391_112616742	3300011270	Vadose Zone Soil	EQIGWYGRYGFVPIEDVAASGPQRMFLDVRTVRAAIRR*
Ga0137391_115511722	3300011270	Vadose Zone Soil	IITDAYPDRAGWYARFGFIALEGAPESGPQRMFLDIRTIRMALKGPH*
Ga0137364_100217856	3300012198	Vadose Zone Soil	TDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0137364_100698883	3300012198	Vadose Zone Soil	TDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMARKGSQ*
Ga0137382_105300631	3300012200	Vadose Zone Soil	IITDAYRDRVDWYARYGFIALEGTAESCPQRMFLDIRTVRMALKGAQ*
Ga0137363_103819221	3300012202	Vadose Zone Soil	DAVGCRCIITDAYRDRVDWYARYGFIALEGTAESCPQRMFLDIRTVRMALKGSQ*
Ga0137376_108462422	3300012208	Vadose Zone Soil	GCRCIITDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0137377_105773883	3300012211	Vadose Zone Soil	AYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0137377_114892581	3300012211	Vadose Zone Soil	TDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIKTVRMALKGSQ*
Ga0137370_100315156	3300012285	Vadose Zone Soil	RVADAVGCRCIITDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ*
Ga0181524_100199806	3300014155	Bog	VADQVGCRCIVTDAYRDRINWYARYGFVPIAGASETGPQRMFLDLRTVRAALRR*
Ga0182014_101721481	3300014491	Bog	RDRIDWYARYGFVALEGGAPSGPQRMFLDIRTLRMALKQP*
Ga0182015_102846323	3300014495	Palsa	VITDAYRDKAGWYARYGFIPVEGGAQDGPQKMFLDIRTMRAALQHGKQ*
Ga0182024_116698631	3300014501	Permafrost	DAYRDRVSWYARYGFVPIEGAAATGPQRMFLDLRTVRAALPR*
Ga0182037_116669092	3300016404	Soil	RCIITDAYRDKVSWYAKYGFIPLEGGSENQPTQRMFLDIRTLKAALQRPHHGWAQ
Ga0181505_105150661	3300016750	Peatland	AFRISLRAAAEIGCRYIIADACRDRIGWYARYGFEPIEGSTEGATQRMFLDIRTVRAAVEAGNKRF
Ga0134112_102232882	3300017656	Grasslands Soil	LRVADDVGCRCIITDAYRDRVDWYARYGFVALEGAAESGPQRMFLDIRTIRMALKGAQ
Ga0187856_11922931	3300017925	Peatland	IADVYRDRIDWYARYGFVALEGGAPSGPQRMFLDIRTVRGALKGPQQA
Ga0187848_102369881	3300017935	Peatland	ADDVGCRCIIADVYRDRIDWYARYGFVALEGGAPSGPQRMFLDIRTVRGALKGPQQA
Ga0187821_100359921	3300017936	Freshwater Sediment	DAYRNRVDWYARYGFVALEGASESGPQRMFLDMRTIRMALKGTQ
Ga0187879_105830811	3300017946	Peatland	RIDWYARYGFVALEGGAPSGPQRMFLDMRTVRMALKQA
Ga0187817_105297362	3300017955	Freshwater Sediment	WYARYGFVALEGASESGPQRMFLDMRTIRMALKGTQ
Ga0187776_107972881	3300017966	Tropical Peatland	ADEVGCRCIVTDAYPDRISWYRKYGFVAIEGAAESGPQRMFLDIRTVRAALRG
Ga0181520_110250511	3300017988	Bog	RVADEVSCRCIIVHAYPDRVGWYAKYGFIPIEGTAKDGPRKMSLDVRTIRAALKSGSAQE
Ga0187891_11185501	3300017996	Peatland	IIADVYRDRIDWYARYGFVALEGGAPSGPQRMFLDIRTVRVALKGSQQA
Ga0187804_105634912	3300018006	Freshwater Sediment	GCRCIITDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ
Ga0187880_14189051	3300018016	Peatland	DVYHGRLDWYARYGFVALEGAVPGGPQRMFLDLRTVRMALKGGGASST
Ga0187881_103204211	3300018024	Peatland	RYGFVALEGGAPSGPQRMFLDIRTVRVALKGSQQA
Ga0187881_103773561	3300018024	Peatland	KIEWYAKYGFVPIEGASEERPQKMFLDLRTIRKAMQSR
Ga0187863_107964812	3300018034	Peatland	IIADAYRNRIDWYARYGFVALDGGAASGPQRMFLDIRTVRLALQGKEQT
Ga0187875_107018591	3300018035	Peatland	RISLRAADEVGCRSIVTDAYRDRISWYAQYGFVPIEGAAESGPQRMFLDVRTVRAALRR
Ga0187871_103474401	3300018042	Peatland	EVGCRAIIADAYRNRIDWYARYGFVALDGGAASGPQRMFLDIRTVRLALQGKEQT
Ga0187887_108779981	3300018043	Peatland	LVTDAYRDKVAWYAKYGFIPIEGASEDGPQKMFIDIRTIRAALQPALRTGG
Ga0187851_102479882	3300018046	Peatland	GCRYLVTDAYRDKVAWYAKYGFIPIEGASEDGPQKMFIDIRTIRAALQPALRTGG
Ga0187766_100996571	3300018058	Tropical Peatland	DWYARYGFVALEGASESGPQRMFLDMRTIRMALRGRQ
Ga0210407_110113152	3300020579	Soil	VDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ
Ga0210401_102033023	3300020583	Soil	VGCRCIITDAYRDRVDWYARYGFVALAGTAESGPQRMFLDMRTIRMALS
Ga0179596_104720481	3300021086	Vadose Zone Soil	LRAADDVGCRCIITDAYPNRTAWYVRYGFVPLEGGVEDGPQRMFLDIRTIRMALKTPK
Ga0210406_100583594	3300021168	Soil	CIITDAYRDRVDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ
Ga0210408_114558371	3300021178	Soil	AYRDRVSWYARYGFVPLDGAAATGPQRMFLDVRTIRAALPR
Ga0213881_101823411	3300021374	Exposed Rock	MKSDAAALITDAYRDRIGWYGRYGFEPIHGAIENGPQRMFLDMRTLR
Ga0210409_101062271	3300021559	Soil	LRVADEVGCRCIITDAYRDRVSWYARYGFVPLDGAAATGPQRMFLDVRTIRAALPR
Ga0224547_10572061	3300023255	Soil	LRVADEVGCRSIITDAYRDRVSWYARYGFVPIEGAAATGPQRMFLDVRTVRAALQG
Ga0209268_10247184	3300026314	Soil	ITDAYRDRVDWYARYGFVALEGAAESGPQRMFLDIRTIRMALKGTQ
Ga0257153_11132432	3300026490	Soil	GCRCIITDAYRDRVSWYARYGFVPLEGAAATGPQRMFLDLRTVRAALQR
Ga0209160_11534843	3300026532	Soil	TDAYRERVDWYARYGFVALEGAAESGPQRMFLDIRTIRMALKGTQ
Ga0209648_106362661	3300026551	Grasslands Soil	LRVADEVGCRCIITDAYRDRVSWYARYGFVPIEGAAEGGPQRMFLDIRTLRAAAPN
Ga0208724_10027764	3300027064	Forest Soil	IALRVADAVGCRCIITDAYRDQVDWYARYGLIALEGTAESGPQRMFLDIRTVRIALKGSR
Ga0209731_10278391	3300027326	Forest Soil	DAVGCRCIITDAYRDRVDWYARYGFVALEGTAESGPQRLFLDIRTVRMALKGSQ
Ga0209689_11023043	3300027748	Soil	VDWYARYGFIALEGTAESGPQRMFLDIRTVRMALKRSQ
Ga0209526_106972221	3300028047	Forest Soil	YRYRVDWYARYGFVALEGAAESGPQRTFLDIRTIRTALKDPR
Ga0302221_102726761	3300028806	Palsa	ITDAYRDKAGWYARYGFIPVEGAERDGPQKMFLDIRTIRAALQQGKK
Ga0302218_102993921	3300028863	Palsa	VAEDVGCRCVITDAYRDKAGWYARYGFIPVEGTAQDGPQKMFLDIRTIRAALQYGNQ
Ga0311362_110468291	3300029913	Bog	LGVQLLRVSDEVGCRCIITDAYRDRVGWYAKYGFIPIEGPTKDGPQKRFIDVRTIRVALKSGSVQG
Ga0302190_100956601	3300029988	Bog	VADEIGCRCMVTDAYRDKISWYAKYGFVPIDGAGENGPQKMFLDLRTIRATLQNS
Ga0311339_110084931	3300029999	Palsa	ITDAHRDRMSWYARYGFVPIEGAAAEGPQRMFLDIRTIRKALQSES
Ga0311339_114742902	3300029999	Palsa	KAGWYARYGFIPVEGTAQDGPQKMFLDIRTIRAALQYGNQ
Ga0311338_115332431	3300030007	Palsa	EVGCRCIVTDAYRDRITWYAQYGFVAIEGAAENGPVRMFLDLRTVRAALC
Ga0302180_103846191	3300031028	Palsa	RDRMSWYARYGFVPIEGAAAEGPQRMFLDIRTIRKALQSES
Ga0302324_1031688211	3300031236	Palsa	RVADDVGCRCVITDAYRDKAGWYARYGFIPVEGAERDGPQKMFLDIRTIRAALQQGKK
Ga0302320_111482481	3300031524	Bog	LKALVLVTDAYRDRVGWYAKYGFIPIEGTAKDGPRKMFLDVRTIRAA
Ga0302320_115097372	3300031524	Bog	DEVGCRCIVTDAYRDRVGWYAKYGFIPIEGTAKDGPRKMFLDVRTIRAALKSGSAQE
Ga0302320_116759462	3300031524	Bog	CRCIITDAYRERVGWYAKYGFIPIEGAGTDGPQKMFLDVRTIRAALRGAIEQE
Ga0310886_111428881	3300031562	Soil	DRVSWYARYGFVPIEGAAATGPQRMFLDVRTIRAALPR
Ga0307476_103184791	3300031715	Hardwood Forest Soil	LRVADEVGCRCIVTDAYRDWIGWYAKYGFIPIEGASKDGPQKMFLDVRTIRDALKGGIEQ
Ga0308175_1017549501	3300031938	Soil	TDAYREQMSWYARYGFIPIEGGAADRPHRMFLDIRTIRKALRSYW
Ga0311301_115623341	3300032160	Peatlands Soil	RDRVDWYARYGFIALEGTAESGPQRMFLDIRTIRTAFKGSQ
Ga0307471_1000594216	3300032180	Hardwood Forest Soil	YRDRVGWYARYGFIALEGTAESGPQRMFLDIRTVRMALKGSQ
Ga0316227_12551982	3300032677	Freshwater	RCIITDAYRDKVAWYVRYGFIPIEGSTKNGPQRMFLDIRTIRTAYERGDK
Ga0335078_102501333	3300032805	Soil	AYRDRIAWYARYGFAPIEGAAESGPQRMFLDIRTVRAALRGRGQ
Ga0335078_121517731	3300032805	Soil	DEVGCRCIITDAYQDRISWYERYGFVPIEGGAGGGPQRMFLDLRTMRAALRR
Ga0335081_108456501	3300032892	Soil	INWYARYGFVPIEGAADSGPQRMFLDLRTIRGALRR
Ga0334827_004462_2_118	3300034065	Soil	ERTGWYRRYGFEPIEGCAADGPHRMFLDVRTVREAKRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089193

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences