Metagenome / Metatranscriptome Family F089192

Basic Information
Family ID	F089192
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	48 residues
Representative Sequence	DDLAALHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA
Number of Associated Samples	101
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Most Common Taxonomy
Group	Bacteria (95.413 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.349 % of family members)
Environment Ontology (ENVO)	Unclassified (17.431 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.550 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.27% β-sheet: 0.00% Coil/Unstructured: 79.73%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13350	Y_phosphatase3	74.31
PF08402	TOBE_2	22.02
PF02627	CMD	0.92
PF03861	ANTAR	0.92
PF13466	STAS_2	0.92
PF00528	BPD_transp_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.92
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.92
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	94.50 %
Unclassified	root	N/A	4.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	94.50 %
Unclassified	root	N/A	4.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	91.74 %
Unclassified	root	N/A	4.59 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	8.26 %
Unclassified	root	N/A	4.59 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.83 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.26 %
Unclassified	root	N/A	4.59 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.75 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.83 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.92 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.26 %
Unclassified	root	N/A	4.59 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.83 %
Actinomycetospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora	0.92 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.92 %
Planotetraspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planotetraspora	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.26 %
Unclassified	root	N/A	4.59 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.83 %
Planotetraspora thailandica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planotetraspora → Planotetraspora thailandica	0.92 %
Burkholderia lata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia lata	0.92 %
Actinomycetospora chiangmaiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora chiangmaiensis	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10077263	Not Available	1305	Open in IMG/M
3300004082\|Ga0062384_101079462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	578	Open in IMG/M
3300004092\|Ga0062389_101841794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	784	Open in IMG/M
3300004635\|Ga0062388_101108316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	777	Open in IMG/M
3300005167\|Ga0066672_10941889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300005175\|Ga0066673_10546567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	679	Open in IMG/M
3300005329\|Ga0070683_100200328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1896	Open in IMG/M
3300005356\|Ga0070674_101077235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	709	Open in IMG/M
3300005437\|Ga0070710_10198082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1266	Open in IMG/M
3300005439\|Ga0070711_100988437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300005451\|Ga0066681_10490752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300005534\|Ga0070735_10034832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora chiangmaiensis	3458	Open in IMG/M
3300005542\|Ga0070732_10987694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	515	Open in IMG/M
3300005574\|Ga0066694_10594292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300005591\|Ga0070761_10137738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1425	Open in IMG/M
3300005598\|Ga0066706_11481700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	511	Open in IMG/M
3300005602\|Ga0070762_11233064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	518	Open in IMG/M
3300005618\|Ga0068864_100389806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1322	Open in IMG/M
3300005841\|Ga0068863_102663229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300006034\|Ga0066656_10967553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	546	Open in IMG/M
3300006047\|Ga0075024_100867230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	511	Open in IMG/M
3300006162\|Ga0075030_100468375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1003	Open in IMG/M
3300006176\|Ga0070765_100744740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	926	Open in IMG/M
3300006176\|Ga0070765_101624808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	608	Open in IMG/M
3300006804\|Ga0079221_11677180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300006806\|Ga0079220_10985526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	667	Open in IMG/M
3300009038\|Ga0099829_10453136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1063	Open in IMG/M
3300009088\|Ga0099830_10759634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	799	Open in IMG/M
3300009137\|Ga0066709_103111912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300009551\|Ga0105238_11656711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	670	Open in IMG/M
3300009623\|Ga0116133_1114968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	690	Open in IMG/M
3300009665\|Ga0116135_1390808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	563	Open in IMG/M
3300009683\|Ga0116224_10610889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	521	Open in IMG/M
3300009824\|Ga0116219_10292248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	920	Open in IMG/M
3300010375\|Ga0105239_13059210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	545	Open in IMG/M
3300010376\|Ga0126381_102493996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	741	Open in IMG/M
3300010396\|Ga0134126_12685503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300010876\|Ga0126361_11195691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	759	Open in IMG/M
3300011107\|Ga0151490_1024702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300012201\|Ga0137365_10451810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	946	Open in IMG/M
3300012203\|Ga0137399_10965432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	718	Open in IMG/M
3300012363\|Ga0137390_11669413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300012923\|Ga0137359_10811579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	810	Open in IMG/M
3300012958\|Ga0164299_10132523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1352	Open in IMG/M
3300014489\|Ga0182018_10270773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	930	Open in IMG/M
3300017821\|Ga0187812_1311675	Not Available	500	Open in IMG/M
3300017926\|Ga0187807_1211107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300017928\|Ga0187806_1035178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1493	Open in IMG/M
3300017999\|Ga0187767_10335023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planotetraspora → Planotetraspora thailandica	527	Open in IMG/M
3300018034\|Ga0187863_10225720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1041	Open in IMG/M
3300018034\|Ga0187863_10830033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300018062\|Ga0187784_11661177	Not Available	506	Open in IMG/M
3300018085\|Ga0187772_10114058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1755	Open in IMG/M
3300018086\|Ga0187769_10259056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1295	Open in IMG/M
3300018090\|Ga0187770_11000169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	673	Open in IMG/M
3300018482\|Ga0066669_11040600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	739	Open in IMG/M
3300020581\|Ga0210399_10848773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	743	Open in IMG/M
3300020582\|Ga0210395_10386812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1052	Open in IMG/M
3300020583\|Ga0210401_11635564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300021362\|Ga0213882_10294670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	676	Open in IMG/M
3300021374\|Ga0213881_10390733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	626	Open in IMG/M
3300021384\|Ga0213876_10730018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300021401\|Ga0210393_10170525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1753	Open in IMG/M
3300021401\|Ga0210393_10716527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	816	Open in IMG/M
3300021403\|Ga0210397_11475156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300021404\|Ga0210389_10402529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1076	Open in IMG/M
3300021404\|Ga0210389_10956267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	665	Open in IMG/M
3300021407\|Ga0210383_11294809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	609	Open in IMG/M
3300021420\|Ga0210394_11804278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300021433\|Ga0210391_10380025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1108	Open in IMG/M
3300021474\|Ga0210390_11082711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300021474\|Ga0210390_11562331	Not Available	520	Open in IMG/M
3300021477\|Ga0210398_11193504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300021477\|Ga0210398_11252220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	584	Open in IMG/M
3300021479\|Ga0210410_10974321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	736	Open in IMG/M
3300022756\|Ga0222622_10513079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	858	Open in IMG/M
3300024254\|Ga0247661_1114819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300025412\|Ga0208194_1048294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	658	Open in IMG/M
3300025898\|Ga0207692_11046771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300025929\|Ga0207664_10880859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	804	Open in IMG/M
3300025949\|Ga0207667_12060366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300027094\|Ga0208094_105564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300027497\|Ga0208199_1032864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300027641\|Ga0208827_1072656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1085	Open in IMG/M
3300027692\|Ga0209530_1141174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	676	Open in IMG/M
3300027696\|Ga0208696_1152260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	748	Open in IMG/M
3300027765\|Ga0209073_10489027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300027842\|Ga0209580_10328541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	762	Open in IMG/M
3300027910\|Ga0209583_10236202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	799	Open in IMG/M
3300028715\|Ga0307313_10175280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	664	Open in IMG/M
3300028791\|Ga0307290_10257791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300030494\|Ga0310037_10250492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300030580\|Ga0311355_10881091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	814	Open in IMG/M
3300030617\|Ga0311356_10800948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	894	Open in IMG/M
3300030706\|Ga0310039_10288187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	624	Open in IMG/M
3300030707\|Ga0310038_10296083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	732	Open in IMG/M
3300030730\|Ga0307482_1271782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	538	Open in IMG/M
3300031234\|Ga0302325_10173589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3787	Open in IMG/M
3300031708\|Ga0310686_106176822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	713	Open in IMG/M
3300031708\|Ga0310686_115005766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia lata	1253	Open in IMG/M
3300031771\|Ga0318546_11333498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300031799\|Ga0318565_10445534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	627	Open in IMG/M
3300032066\|Ga0318514_10309649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	835	Open in IMG/M
3300032805\|Ga0335078_11661037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	703	Open in IMG/M
3300032805\|Ga0335078_12191630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583	Open in IMG/M
3300032898\|Ga0335072_10979028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	780	Open in IMG/M
3300032954\|Ga0335083_10060557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3928	Open in IMG/M
3300034124\|Ga0370483_0365620	Not Available	501	Open in IMG/M
3300034819\|Ga0373958_0173450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	552	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.66%
Host-Associated	Host-Associated	7.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.90%
Aquatic	Environmental → Aquatic	13.76%
Plants	Host-Associated → Plants	7.34%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.31%
Freshwater	Environmental → Aquatic → Freshwater	10.09%
Sediment	Environmental → Aquatic → Sediment	3.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.67%
Peat	Environmental → Terrestrial → Peat	2.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.83%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.29%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.35%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.67%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.92%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027094	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF022 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089192

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_100772631	3300003505	Forest Soil	RELAANVPWDVVTLAGRPDDRNVELRVIPPFPLKRLPGA*
Ga0062384_1010794622	3300004082	Bog Forest Soil	LAALHRELSANVPWAVSVMAGTAGDRNTELRVIPPFPLKRLPGA*
Ga0062389_1018417942	3300004092	Bog Forest Soil	ETSDDLAALHRELSANVPWAVSVMAGTAGDRNTELRVIPPFPLKRLPGA*
Ga0062388_1011083162	3300004635	Bog Forest Soil	SDDLAALHRELSANVPWAVSVMAGTAGDRNTELRVIPPFPLKRLPGA*
Ga0066672_109418891	3300005167	Soil	ALHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA*
Ga0066673_105465672	3300005175	Soil	DLAALHRELAANVPLDVTAMAGAATDRNVELRVVPPFPLKRLPGA*
Ga0070683_1002003284	3300005329	Corn Rhizosphere	SDDLAALHRELAANVPWDVSVMAGNAADRNVELRLAPPFPLKRLPGA*
Ga0070674_1010772352	3300005356	Miscanthus Rhizosphere	DLAALHRELAANVPWDISVMAGSAADRNVELRLAPPFPLKRLPGA*
Ga0070710_101980823	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	DLAALHRELAANVPLDVTAMAGVATDRNVELRVVPPFPLKRLPGA*
Ga0070711_1009884371	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVDHDTPAAPALPPATTDDLAALHRELAANVPLDVTAMAGVATDRNVELRLVPPFPLKRLPGA*
Ga0066681_104907522	3300005451	Soil	AALHRELAANVPWDVSVMAGTAADRNVELRLAPPFPLKRLPGA*
Ga0070735_100348325	3300005534	Surface Soil	DDLAALHRELAANVPWPVSAMAGAASDRNTELRVVPPFPLKRLPGA*
Ga0070732_109876942	3300005542	Surface Soil	DSTDDLAALHRELAANVPWAVAVMAGTATDRNTELRVTPPFPLKHLPGA*
Ga0066694_105942922	3300005574	Soil	LHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA*
Ga0070761_101377381	3300005591	Soil	TDDLAALHRELSANVPWPVSALAGNVGDRNVELRVAPPFPLKTLSGG*
Ga0066706_114817002	3300005598	Soil	LAALHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA*
Ga0070762_112330641	3300005602	Soil	LAPASLENTDDLAALHRELAANVPLDTSVMAGDASDRNVELLLIPPFPLKRLPGA*
Ga0068864_1003898061	3300005618	Switchgrass Rhizosphere	EFLSIVTTMVDHDTPAAPALPPATTDDLAALHRELAANVPLDVTVMAGVATDRNVELRLVPPFPLKRLPGA*
Ga0068863_1026632291	3300005841	Switchgrass Rhizosphere	PALPPATTDDLAALHRELAANVPLDVTVMAGVATDRNVELRLVPPFPLKRLPGA*
Ga0066656_109675531	3300006034	Soil	ALHRELAANVPWDVSVMAGNAADRNVELRLASPFPLKRLPGA*
Ga0075024_1008672301	3300006047	Watersheds	AALHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA*
Ga0075030_1004683752	3300006162	Watersheds	LAALHRELAANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGV*
Ga0070765_1007447402	3300006176	Soil	DDLAALHRELAANVPWDVTVMAGTTADRNVELRVVPPFPLKRLPGV*
Ga0070765_1016248082	3300006176	Soil	DLAALHRELAANVPWAVSVMAGTAGDRNTELRVIPPFPLKRLPGA*
Ga0079221_116771802	3300006804	Agricultural Soil	LSIVTTMVDHDTPAAPALPPETTDDLAALHRELAANVPLDVTAMAGIATDRNVELRLVPPFPLKRLPGA*
Ga0079220_109855261	3300006806	Agricultural Soil	PAAPALPPATTDDLAALHRELAANVPLDVTAMAGVATDRNVELRLVPPFPLKRLPGA*
Ga0099829_104531362	3300009038	Vadose Zone Soil	LHRELAANVPWDTTAMAGTSGDRNVELRVIPPFPLKRLPGV*
Ga0099830_107596342	3300009088	Vadose Zone Soil	SLETADDLAALHRELAANVPWDTTAMAGTAGDRNVELRVIPPFPLKRLPGA*
Ga0066709_1031119121	3300009137	Grasslands Soil	PVAPPVTLATSDDLAALHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA*
Ga0105238_116567111	3300009551	Corn Rhizosphere	ELAANVPLDVTAMAGAAADRNVELRVVPPFPLKRLPGA*
Ga0116133_11149682	3300009623	Peatland	APAVPVNTIDDLAALHRELAANVPLDITVMAGITTDRNVELRIAPPFPLKRLPGA*
Ga0116135_13908081	3300009665	Peatland	ASLENTDDLAALHRELAANVPLDTSVMAGGASDRNVELLLVPPFPLKRLPGV*
Ga0116224_106108891	3300009683	Peatlands Soil	AANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGV*
Ga0116219_102922482	3300009824	Peatlands Soil	ELAANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGV*
Ga0105239_130592102	3300010375	Corn Rhizosphere	ALHRELAANVPWDVTVMAGTPADRNVELRVAPPFPLKRLPEA*
Ga0126381_1024939961	3300010376	Tropical Forest Soil	LAALHRELAANVPLDVTAMAGVATDRNVELRLVPPFPLKRLPGA*
Ga0134126_126855032	3300010396	Terrestrial Soil	PLSLATSDDLAALHRELAANVPWDVSVMAGNAADRNVELRLAPPFPLKRLPGA*
Ga0126361_111956912	3300010876	Boreal Forest Soil	HRELAANVPWDVAALAGRPGDRNVELRIIPPFPLKRLPGA*
Ga0151490_10247022	3300011107	Soil	RELAANVPWDVGVMAGAATDRNVELRVAPPFPLKRLPGA*
Ga0137365_104518101	3300012201	Vadose Zone Soil	VAPPVTLATSDDLAALHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA*
Ga0137399_109654322	3300012203	Vadose Zone Soil	AAPPVALATSDDLAALHRELAVNVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA*
Ga0137390_116694131	3300012363	Vadose Zone Soil	TMVDHDTPTAPSLSLETSDDLAALHRELAANVPLDVTVMAGTAADRNVELRVAPPFPLKRLPGV*
Ga0137359_108115792	3300012923	Vadose Zone Soil	LAALHRELAANVPWNVTVMAGTATDRNVELRVAAPFPLKHLPGV*
Ga0164299_101325231	3300012958	Soil	LAALHRELAANVPWDVSVMTGTAADRNVELRLAPPFPLKRLPGA*
Ga0182018_102707732	3300014489	Palsa	LETADDLAALHRELAANVPWDTSALAGAADDRNVELRVIPPFPLERLSGR*
Ga0187812_13116752	3300017821	Freshwater Sediment	AALHRELAANVPWPVSALAGNVGDRNVELRVAPPFPLKTLSGG
Ga0187807_12111071	3300017926	Freshwater Sediment	PIAAASLDTSEDLAALHRELAANVPWDIAAMAGAASDRNTELRVIPAFPLKRLRGA
Ga0187806_10351781	3300017928	Freshwater Sediment	ANVPWPVSALAGAAGDRNTELRVIPPFPLKRLPGD
Ga0187767_103350232	3300017999	Tropical Peatland	ELAANVPWDVTAMAGTPADRNAELRVVPPFLLKRLPGA
Ga0187863_102257201	3300018034	Peatland	QTAADLASLHRELAANIPWATATLAGDASDRNVELRVIPPFPLKVLTGG
Ga0187863_108300332	3300018034	Peatland	DLASLHRELAANIPWGAAALAGDASDRNVALRVIPPFPLGRLPGG
Ga0187784_116611772	3300018062	Tropical Peatland	HRELAANVPWPVSALAGTVSDRNVELRVIPPFSLKTLSGG
Ga0187772_101140582	3300018085	Tropical Peatland	DDLAALHRELASNVPWDISAMAGATSDRNTELRVVPPFPLKRLPGG
Ga0187769_102590563	3300018086	Tropical Peatland	LHRELAANVPWDITGLTGTPGDRNVELRVVPPFPVKRLPGA
Ga0187770_110001692	3300018090	Tropical Peatland	DDLAALHRELAANVPWDIAAMAGAASDRNTELRVIPPFPLKRLRGA
Ga0066669_110406001	3300018482	Grasslands Soil	ALHRELAANVPWDVSVMAGTAADRNVELRLAPPFLLKRLPGA
Ga0210399_108487732	3300020581	Soil	TTDDLAALHRELAANVPWAVSVMAGTAGDRNTELRVIPPFPLKRLPGA
Ga0210395_103868122	3300020582	Soil	RELAANVPWDVTVMTGSATDRNVELRVAPPFPLKRLTGA
Ga0210401_116355642	3300020583	Soil	SDDLAALHRELAANLPWDGTVMAGTAADRNMELRVAPPFPLKRLPGA
Ga0213882_102946701	3300021362	Exposed Rock	ANVPWDITPMAGTPGDRNAELRVVAPFPLKRLPGA
Ga0213881_103907332	3300021374	Exposed Rock	YLSIVTTMVDHDTPAAPAVPPETGDDLAALHRELAANVPLDVTAMAGVATDRNAELRLVPPFPLKRLPGA
Ga0213876_107300181	3300021384	Plant Roots	LHRELAANVPLDVTAMAGVATDRNAELRLVPPFPLKRLPGA
Ga0210393_101705253	3300021401	Soil	DLAALHRELAANVPWAVSVMAGTAGDRNTELRVVPPFPLKRLPGA
Ga0210393_107165272	3300021401	Soil	ANVPWDISVMAGSAADRNVELRLAPPFPLKRLPGA
Ga0210397_114751561	3300021403	Soil	TAPSLSLETSDDLAALHRELAANVPWDVTVMAGTAGDRNVELRVVPPFPLKRLPGV
Ga0210389_104025292	3300021404	Soil	PPVALATSDDLAALHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA
Ga0210389_109562672	3300021404	Soil	PAAPPVPLATSDDLAALHRELAANVPWDISVMAGSAADRNVELRLAPPFPLKRLPGA
Ga0210383_112948092	3300021407	Soil	ALSLETSDDLAALHRELAANVPWDVTVMAGSAADRNVELCVVPPFPLKRLPGV
Ga0210394_118042781	3300021420	Soil	DDLAALHRELAANVPWDVTVMAGTAADRNVELRVAPPFPLKRLPGA
Ga0210391_103800252	3300021433	Soil	PVAPALSLETSDDLAALHRELAANVPWDVTVMAGSAADRNVELCVVPPFPLKRLPGV
Ga0210390_110827111	3300021474	Soil	PASLENTDDLAALHRELAANVPLDTSVMAGDASDRNVELLLIPPFPLKRLPGA
Ga0210390_115623311	3300021474	Soil	LAALHRELAANVPWAVSVMAGTAGDRNTELRVIPPFPLKRLPGG
Ga0210398_111935041	3300021477	Soil	LAALHRELAANVPWDVTVMAGSAADRNVELCVVPPFPLKRLPGV
Ga0210398_112522201	3300021477	Soil	ALHRELAANVPWAVSVMAGTTEDRNTELRVIPPFPLKRLPGA
Ga0210410_109743211	3300021479	Soil	PPVALATSDDLAALHRELAANVPWDVTVMAGTAGDRNVELRVAPPFPLKRLPGA
Ga0222622_105130791	3300022756	Groundwater Sediment	VPLATSDDLAALHRELAANVPWDVSVMAGNAADRNVELRLAPPFPLKRLPGA
Ga0247661_11148191	3300024254	Soil	RELAANVPWDISVMAGTAADRNVELRLAPPFPLKRLPGA
Ga0208194_10482942	3300025412	Peatland	PAVPVNTIDDLAALHRELAANVPLDITVMAGITTDRNVELRIAPPFPLKRLPGA
Ga0207692_110467711	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	DDLAALHRELAANVPWDVTVMAGTAGDRNVELRVAPPFPLKRLPGA
Ga0207664_108808591	3300025929	Agricultural Soil	TTMVDHDTPAAPALPPATTDDLAALHRELAANVPLDVTAMAGVATDRNVELRLVPPFPLKRLPGA
Ga0207667_120603662	3300025949	Corn Rhizosphere	LHRELAANVPWDVTVMAGTPADRNVELRVAPPFPLKRLPGA
Ga0208094_1055642	3300027094	Forest Soil	SDDLAALHRELAANVPWDVTVMAGTAGDRNVELRVAPPFPLKRLPGA
Ga0208199_10328643	3300027497	Peatlands Soil	AALHRELAANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGV
Ga0208827_10726563	3300027641	Peatlands Soil	LAANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGV
Ga0209530_11411741	3300027692	Forest Soil	VSLETTDDLAALHRELSANFPWAVSVMAGAASDRNTELRVIPPFPVKRLPGA
Ga0208696_11522601	3300027696	Peatlands Soil	ALHRELAANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGA
Ga0209073_104890272	3300027765	Agricultural Soil	DDLAALHRELAANVPLDVTAMAGVATDRNVELRLVPPFPLKRLPGA
Ga0209580_103285411	3300027842	Surface Soil	VSPAALETADDLAALHRELSANVPWPVSALAGAASDRNTELRVVPPFPLKHLTGE
Ga0209583_102362022	3300027910	Watersheds	ASLDTTDDLAALHRELAANFPLAVSIMAGDASDRNTELRVIPPFPLKHLVGA
Ga0307313_101752802	3300028715	Soil	VPPVPLATSDDLAALHRELAANVPWDVFVMAGNAADRNVELRLAPPFPLKRLPGA
Ga0307290_102577912	3300028791	Soil	DLAALHRELAANVPWDVTVMAGTAADRNTELRLAPPFPLKRLPGA
Ga0310037_102504921	3300030494	Peatlands Soil	ANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGV
Ga0311355_108810911	3300030580	Palsa	LAPAALESADDLAALHRELAANIPWNVEAMAGAASDRNLELRVLPPFALKRLPGA
Ga0311356_108009482	3300030617	Palsa	SLETTDDLAALHRELAANIPWGTATLAGTPRDRNTELRVLPPFPLGRLPGAES
Ga0310039_102881871	3300030706	Peatlands Soil	PETSDDLAALHRELAANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGV
Ga0310038_102960831	3300030707	Peatlands Soil	DDLAALHRELAANVPWDVTVMAGTAADRNVELRVVPPFPLKRLPGV
Ga0307482_12717822	3300030730	Hardwood Forest Soil	EHAANVPWAVSVMAGTVGDRNTELRVIPPFPLKRLPSA
Ga0302325_101735891	3300031234	Palsa	TPTAAASLETTDDLAALHRELAANIPWGTATLAGTPRDRNTELRVLPPFPLGRLPGAES
Ga0310686_1061768221	3300031708	Soil	LGPASLETTDDLAALHRELAANFPWAVSVMAGTAGDRNTELRVIPPFPLKRLPSA
Ga0310686_1150057661	3300031708	Soil	LGPASLETTDDLAALHRELAANFPWAVSVMAGTAGDRNTELRVSPPFPLKRLPGV
Ga0318546_113334982	3300031771	Soil	TTMVDHDTPLGPASLDTTDDLAALHRELAANFPLAISVMAGDADDRNTELRVIPPFPLKGLAGA
Ga0318565_104455342	3300031799	Soil	DTPLGPASLDTTDDLAALHRELAANFPLAISVMAGDADDRNTELRVIPPFPLKGLAGA
Ga0318514_103096491	3300032066	Soil	TPLGPASLDTTDDLAALHRELAANFPLAISVMAGDADDRNTELRVIPPFPLKGLAGA
Ga0335078_116610371	3300032805	Soil	DHDTPAAPPRSPQTQDDLAALHRELAANVPLDVTAMAGTPGDRNTELRVVPPFPLKRLPG
Ga0335078_121916301	3300032805	Soil	LAANVPWDVSVMAGRAADRNVELRLAPPFPLKRLPGV
Ga0335072_109790282	3300032898	Soil	LHRELAANVPWDVSVMAGAGTDRNVELRVAPPFPLKRLPGA
Ga0335083_100605576	3300032954	Soil	RELAANVPWDVRVMAGAAADRNTELRVAAPFPLKRLPGA
Ga0370483_0365620_331_489	3300034124	Untreated Peat Soil	VSLETTDDLAALHRELAANFPWAVSVMAGAASDRNTELRVIPPFPVKRLPGA
Ga0373958_0173450_440_550	3300034819	Rhizosphere Soil	AANVPWDVSVMAGSAADRNVELRLAPPFPLKPLPGA

Hidden Markov Model


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