NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F089153

Metagenome / Metatranscriptome Family F089153

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089153
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 39 residues
Representative Sequence MSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKV
Number of Associated Samples 93
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 96.33 %
% of genes near scaffold ends (potentially truncated) 99.08 %
% of genes from short scaffolds (< 2000 bps) 98.17 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (54.128 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(21.101 % of family members)
Environment Ontology (ENVO) Unclassified
(78.899 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.743 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60
1Ocean6-_02435430
2DelMOSum2010_100540107
3DelMOSum2011_101652791
4BBAY94_100363751
5JGI24006J15134_101030474
6JGI24005J15628_101766661
7ACM6_10127414
8Ga0069134_1660473
9Ga0066825_103819733
10Ga0078893_101718454
11Ga0075447_101130081
12Ga0098037_11634401
13Ga0098037_12459332
14Ga0098036_10896361
15Ga0105748_103861833
16Ga0102815_102974801
17Ga0114993_113323631
18Ga0114994_111323532
19Ga0115547_10276241
20Ga0115546_11430351
21Ga0115546_12743663
22Ga0115546_12808063
23Ga0115565_105634461
24Ga0115001_105415061
25Ga0098043_10833194
26Ga0129342_10360555
27Ga0151671_10069161
28Ga0160423_105858571
29Ga0163110_112760593
30Ga0163109_107844545
31Ga0163109_111775721
32Ga0163180_105971233
33Ga0163111_103637431
34Ga0163111_121533191
35Ga0163111_125804631
36Ga0181404_10257361
37Ga0181373_10474771
38Ga0181373_10788443
39Ga0181398_10717444
40Ga0181396_11206603
41Ga0181417_10871691
42Ga0181415_10392831
43Ga0181418_10538971
44Ga0181418_11069411
45Ga0181397_10966063
46Ga0181405_10969401
47Ga0181400_11239813
48Ga0181420_11298841
49Ga0181409_12401291
50Ga0181414_10497811
51Ga0181430_11910771
52Ga0181423_12582131
53Ga0181552_105218591
54Ga0181591_110679733
55Ga0181564_105175653
56Ga0206125_102788763
57Ga0206125_103102453
58Ga0211478_1053161
59Ga0211474_10389071
60Ga0211474_10500453
61Ga0211513_10183214
62Ga0211522_10637421
63Ga0211706_10281691
64Ga0211712_101589721
65Ga0211506_11583783
66Ga0211683_101696531
67Ga0211527_101292871
68Ga0211686_103522122
69Ga0211677_100904491
70Ga0211678_103342093
71Ga0211644_101400953
72Ga0211653_1000656713
73Ga0211576_102784754
74Ga0211574_101210025
75Ga0211545_105010641
76Ga0211643_103949241
77Ga0211514_102728301
78Ga0211577_105045441
79Ga0211614_103758553
80Ga0206682_100761056
81Ga0213858_101691714
82Ga0213861_102138074
83Ga0213861_103000784
84Ga0233426_101277586
85Ga0233426_101464941
86Ga0222664_10673922
87Ga0244775_106282391
88Ga0244775_108168194
89Ga0228662_11413141
90Ga0209634_12794422
91Ga0209634_12818041
92Ga0209337_12668403
93Ga0209194_11277693
94Ga0208134_11545013
95Ga0209603_12145241
96Ga0209603_12652861
97Ga0209119_13349511
98Ga0209630_101234461
99Ga0208749_10167951
100Ga0208023_10471461
101Ga0208970_10825333
102Ga0209830_101123471
103Ga0257106_11211601
104Ga0257110_12769071
105Ga0256417_12234963
106Ga0308010_11550831
107Ga0307488_106391103
108Ga0307488_107986173
109Ga0315331_102971921
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 10.61%    β-sheet: 9.09%    Coil/Unstructured: 80.30%
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Variant

5101520253035MSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
45.9%54.1%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Seawater
Marine
Marine Plankton
Environmental And Host-Associated
Surface Seawater
Seawater
Marine
Aqueous
Seawater
Marine Surface Water
Sackhole Brine
Freshwater To Marine Saline Gradient
Estuary Water
Surface Seawater
Marine
Seawater
Estuarine
Salt Marsh
Marine
Marine
Estuarine
Pelagic Marine
Seawater
Pelagic Marine
Marine
Seawater
Saline Water
Macroalgal Surface
15.6%6.4%4.6%21.1%7.3%13.8%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ocean6-_024354302166559018Environmental And Host-AssociatedMDQDVLGYSSHDWRKHTENAVVVDHKTKMKVNESRVFYTPFQP
DelMOSum2010_1005401073300000101MarineMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKV
DelMOSum2011_1016527913300000115MarineMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRFTHP
BBAY94_1003637513300000949Macroalgal SurfaceMSQDVLGYSSHDWRKHTDDAIVVASDIGIKLEVNKSK
JGI24006J15134_1010304743300001450MarineMSQDILGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKV
JGI24005J15628_1017666613300001589MarineMDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRFTHP
ACM6_101274143300001832Marine PlanktonMSEDVLGYSSHDWRKNTDDAIVIDSKNMNYAKVNDCKV
Ga0069134_16604733300004831Surface SeawaterMSQDVLGYSSHDWRKHTDDAIVVASDIGIKLEVNKSKVIFKHP
Ga0066825_1038197333300005510MarineMSEDVLGYSSHDWRKNTDDAKVFDDKNLTYAKVNDCRVEFTN
Ga0078893_1017184543300005837Marine Surface WaterMSEDVLGYSSHDWRKNTDDAIVIDSKNMNYAKVNDCKVSFK
Ga0075447_1011300813300006191MarineMDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRFT
Ga0098037_116344013300006737MarineMSNDVLGYSSHDWRKHTDDAVVVDGKTGIMKVNECR
Ga0098037_124593323300006737MarineMSEDILGYSSHDWRKHTDDAVVVDDREYEQMKVNNCRV
Ga0098036_108963613300006929MarineMSNDVLGYSSHDWRKHTDDAVVVDDREYEQMKVNN
Ga0105748_1038618333300007992Estuary WaterMSKDITGYSSHDWRKNTDSAVVIDDNVEHKSLKVNDSRVIFI
Ga0102815_1029748013300009080EstuarineMALSDYSSHDWRKNTDDAVVMDDKNKTYAKVNDCKVKF
Ga0114993_1133236313300009409MarineMDVLGYSSHDWRKHTDDAVVMDSWGGAMLRVNDSKVRFTHP
Ga0114994_1113235323300009420MarineMSKDVLGYSSHDWRKHTDDAVVMDSWGGAMLRVNDSKVRFT
Ga0115547_102762413300009426Pelagic MarineMSQDILGYSSHDWRKNTDDAIVVASDIGIKLEVNKS
Ga0115546_114303513300009435Pelagic MarineMALSDYSSHDWRKYTDDAIVVDDKNKTYAKVNDCK
Ga0115546_127436633300009435Pelagic MarineMVGYSSHDWTKNTDDAIVVASDIGIQLEVNKSKVIFTNPKT
Ga0115546_128080633300009435Pelagic MarineMVEIMAEDILGYSSHDWRKHTDSAVVVDDTVEHKGLKVNNSRVIFVNPK
Ga0115565_1056344613300009467Pelagic MarineMALSNYSSHDWTKHTDDAIVVSSNWDHISDEIGVQLKVNESKV
Ga0115001_1054150613300009785MarineMDVLGYSSHDWRKNTDDAVVMDSWGGAMLRVNDSKV
Ga0098043_108331943300010148MarineMSDDILGYSSHDWRKNTDDAVVVDDKGENILKVNK
Ga0129342_103605553300010299Freshwater To Marine Saline GradientMTEYSSHDWRKNTDDAIVVASNIGIQLEANKSKVIF
Ga0151671_100691613300011253MarineMSDDVLGYCCHDWRKHTDDAVVVDDKGENILKVNSSRV
Ga0160423_1058585713300012920Surface SeawaterMTVYSSHDWRKHTDDARVVDDKNMTYAKVNDCRVLF
Ga0163110_1127605933300012928Surface SeawaterMSEDVLGYSSHDWRKHTDDAKVFDDKNLTYAKVKDGR
Ga0163109_1078445453300012936Surface SeawaterMSEDVLGYSSHDWRKNTDDAVVLDEVNKSYAKVNDCKV
Ga0163109_1117757213300012936Surface SeawaterMSEDILGYSSHDWRKNTHDAVVVDDKGDNVLKVNSSRVI
Ga0163180_1059712333300012952SeawaterMAISDYSSHDWRKHTDSAVVVDKNKAMLKVNECKVYFT
Ga0163111_1036374313300012954Surface SeawaterMTEYSSHDWRKNTHDAIVESEDASFIKNKIQLEVNKSKVIFKHPKT
Ga0163111_1215331913300012954Surface SeawaterMTEYSSHDWRKNTDDAIVVASNIGIQLEANKSKVIFTNPK
Ga0163111_1258046313300012954Surface SeawaterMSDDVLGYSSHDWRKNTDDAVVVDDKGENILKVNKSRV
Ga0181404_102573613300017717SeawaterMSEDILGYSSHDWRKNTDDAVVMDSWGGAMLRVNDSKVRF
Ga0181373_104747713300017721MarineMAEDILGYSSHDWRKHTDDAVVVDDREYEQMKVNNCRVIFTN
Ga0181373_107884433300017721MarineMAQEDYSSHDWTKHTDDAIIVSSDIGIELKVNQSKVIFTNP
Ga0181398_107174443300017725SeawaterMSNDVLGYSSHDWRKHTDNAVIVDDREFEQLKVNNSRVIFTN
Ga0181396_112066033300017729SeawaterMSQDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRFTH
Ga0181417_108716913300017730SeawaterMSQDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKV
Ga0181415_103928313300017732SeawaterMVDILGYSSHDWRKHTDDAVVVDNKTGIMKVNDCRVL
Ga0181418_105389713300017740SeawaterMSKDVLGYSSHDWRKYTDDAIVVSDREYEQLKVNNCKVR
Ga0181418_110694113300017740SeawaterMSIDVLGYSSHDWRKNTDDARVIDQKNMTYAKVNDCKVS
Ga0181397_109660633300017744SeawaterMVDILGYSSHDWRKHTDDAVVVDNKTGIMKVNDCRVLF
Ga0181405_109694013300017750SeawaterMSKDILGYSSHDWRKYTDDAIVVASDIGIKLEVNKSKVIF
Ga0181400_112398133300017752SeawaterMDVLGYSSHDWRKYTDDAIVVASDIGIKLEVNKSKVIFKHP
Ga0181420_112988413300017757SeawaterMVDVLGYSSHDWRKHTDDAVVVDNKTGIMKVNDCRVL
Ga0181409_124012913300017758SeawaterMDVLGYSSHDWRKNTDDAIVVASDIGIKLEVNKSKV
Ga0181414_104978113300017759SeawaterMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVSLFPLPL
Ga0181430_119107713300017772SeawaterMSQDVLGYSSHDWRKYTDDAIVVASDIGIKLEVNKSKVIFKHPKT
Ga0181423_125821313300017781SeawaterMSKDVLGYSSHDWRKYTDDAVVVDDIVEHKALKVNDSRVIF
Ga0181552_1052185913300017824Salt MarshMSNDVLGYSSHDWRKHTDDAVVVDDKGDKVFKVNSSRVIFT
Ga0181591_1106797333300018424Salt MarshMSEDVLGYSSHDWRKNTDGAIVIDDKNKTYAKVNDCKVSF
Ga0181564_1051756533300018876Salt MarshMSDDILGYSSHDWRKHTDSAVVVDDKVEHKALKVNDSRV
Ga0206125_1027887633300020165SeawaterMSQDVLGYSSHDWRKHTDDAIVVASDIGIKLEVNK
Ga0206125_1031024533300020165SeawaterMSQDVLGYSSHDWRKYTDDAVVVDDKIEHKALKVNDS
Ga0211478_10531613300020237MarineMAISDYSSHDWRKHTDSAVVVDKNKAMLKVNECKV
Ga0211474_103890713300020296MarineMSQDVLGYSSHDWRKHTDDAIVVASDIGIKLEVNKSKVI
Ga0211474_105004533300020296MarineMSQDVLGYSSHDWRKYTDDAIVVASDIGIKLEVNKSKVI
Ga0211513_101832143300020305MarineMSKDDILGYSSHDWRKHTDSAVVCDSENGMMKVNDSKVYFTN
Ga0211522_106374213300020314MarineMSEDVLGYSSHDWRKNTDDAIVIDDKNKTYAKVNDCKVSF
Ga0211706_102816913300020345MarineMDQDVLGYSSHDWRKHTDDAVVVDHKTKMKVNESRV
Ga0211712_1015897213300020360MarineMSEDVLGYSSHDWRKHTDDAIVVSSNIGIQLEVNKSKVI
Ga0211506_115837833300020365MarineMSNDVLGYSSHDWRKHTDDAVVVDDKGDKVFKVNS
Ga0211683_1016965313300020372MarineMDVLGYSSHDWRKNTDDAVVFDNNSATLKVNDCKVKFT
Ga0211527_1012928713300020378MarineMTVYSSHDWRKHTDDAVVRDNANKTIGKVNDCIVSF
Ga0211686_1035221223300020382MarineMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRFT
Ga0211677_1009044913300020385MarineMSQDVLGYSSHDWRKNTDDAIVVASDIGIQLEVNKSKVIF
Ga0211678_1033420933300020388MarineMDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVR
Ga0211644_1014009533300020416MarineMSTEANYSSHDWRKNTDDAIVVASDIGIQLEVNKSKVIFT
Ga0211653_10006567133300020421MarineMDVLGYSSHDWRKNTDDAIVVASDIGIQLEVNKSKVIFTH
Ga0211576_1027847543300020438MarineMSQDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVND
Ga0211574_1012100253300020446MarineMSEDILGYSSHDWRKNTDNAIVIDDKNKTYAKVNDCKVSFKN
Ga0211545_1050106413300020452MarineMSTEANYSSHDWRKNTDDAIVVASDIGIKLEVNKSKVIFTNPK
Ga0211643_1039492413300020457MarineMSTEANYSSHDWRKNTDDAIVVASDIGIQLEVNKS
Ga0211514_1027283013300020459MarineMSKDDVLGYSSHDWRKHTDDAIVRDDTNKTFAKVNDCVVSFKNPRTLQI
Ga0211577_1050454413300020469MarineMSVDVLGYSSHDWRKYTDDALVVDGATGIMKVNDC
Ga0211614_1037585533300020471MarineMSEDVLGYSSHDWRKNTDDAIVIDEKNMNYAKVNDCKVSFKN
Ga0206682_1007610563300021185SeawaterMSQDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRF
Ga0213858_1016917143300021356SeawaterMSEDVLGYSSHDWRKNTDDARVVDDKNLSYAKVNDCRVI
Ga0213861_1021380743300021378SeawaterMSEDVLGYSSHDWRKNTDDARVVDDKNLSYAKVNDCRVIFT
Ga0213861_1030007843300021378SeawaterMDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKV
(restricted) Ga0233426_1012775863300022920SeawaterMSQDVLGYSSHDWRKYTDDAVVVDDTVEHKALKVND
(restricted) Ga0233426_1014649413300022920SeawaterMSKDILGYSSHDWRKNTDDAVVMDSWGGAMLRVNDSKVRFTH
Ga0222664_106739223300023296Saline WaterMAQEDYSSHDWRKHTDDARVIDDKNLTYAKVNDCRV
Ga0244775_1062823913300024346EstuarineMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDS
Ga0244775_1081681943300024346EstuarineMSKDVLGYSSHDWRKNTDDAVVMDSWGGAMLRVNDSKVRF
Ga0228662_114131413300024415SeawaterMSQDILGYSSHDWRKNTDDAIVVASDIGIKLEVNKSKVIFKHP
Ga0209634_127944223300025138MarineMDVLGYSSHDWRKNTDDAVVMDSWGGAMLRVNDSKVRFT
Ga0209634_128180413300025138MarineMDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSK
Ga0209337_126684033300025168MarineMDVLGYSSHDWRKYTDDATVTDDNSATLKVNDCTVKFTHP
Ga0209194_112776933300025632Pelagic MarineMALSDYSSHDWRKYTDDAIVVDDKNKTYAKVNDCKVSFKN
Ga0208134_115450133300025652AqueousMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVR
Ga0209603_121452413300025849Pelagic MarineMSKDILGYSSHDWRKHTDDAVVLDEVNKSYAKVNDCKVSFTNPKS
Ga0209603_126528613300025849Pelagic MarineMSQDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVR
Ga0209119_133495113300025860Pelagic MarineMSKDVLGYSSHDWRKHTDDAVVMDSWGGAMLRVND
Ga0209630_1012344613300025892Pelagic MarineMTKDVLGYSSHDWRKNTDDAVVMDSWGGAMLRVNDSK
Ga0208749_101679513300026077MarineMSEDVLGYSSHDWRKNTDDARVVDDKNLSYAKVNDCR
Ga0208023_104714613300027206EstuarineMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRFTH
Ga0208970_108253333300027298MarineMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRF
Ga0209830_1011234713300027791MarineMSKDVLGYSSHDWRKNTDDAVVMDSWGGAMLRVNDSK
Ga0257106_112116013300028194MarineMSQDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSKVRFTHP
Ga0257110_127690713300028197MarineMSKDVLGYSSHDWRKYTDDAVVMDSWGGAMLRVNDSK
Ga0256417_122349633300028233SeawaterMSNDVLGYSSHDWRKHTDSAVVVDDYNTEKFKVNNSRVIFIN
Ga0308010_115508313300031510MarineMDVLGYSSHDWRKNTDDAVVFDNNSATLKVNDCKVKF
Ga0307488_1063911033300031519Sackhole BrineMDVLGYSSHDWRKYTDDATVTDDNSATLKVNDCTV
Ga0307488_1079861733300031519Sackhole BrineMDVLGYSSHDWRKHTDDAVVMDSWGGAMLRVNDSKVRF
Ga0315331_1029719213300031774SeawaterMTEYSSHDWRKNTDDAIVVASDIGIKLEVNKSKVIFTN


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