Metagenome Family F089146

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089146
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	41 residues
Representative Sequence	MTEPVRVGELLPGVLAEVVDRAGHGYSRWAELVAQAGYC
Number of Associated Samples	66
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.06 %
% of genes near scaffold ends (potentially truncated)	88.99 %
% of genes from short scaffolds (< 2000 bps)	87.16 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (26.605 % of family members)
Environment Ontology (ENVO)	Unclassified (30.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.284 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.28% β-sheet: 0.00% Coil/Unstructured: 56.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02861	Clp_N	10.09
PF01580	FtsK_SpoIIIE	10.09
PF00004	AAA	2.75
PF01548	DEDD_Tnp_IS110	1.83
PF12846	AAA_10	0.92
PF10009	DUF2252	0.92
PF07702	UTRA	0.92
PF06243	PaaB	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	10.09
COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	Cell cycle control, cell division, chromosome partitioning [D]	10.09
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.83
COG3460	1,2-phenylacetyl-CoA epoxidase, PaaB subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.24 %
Unclassified	root	N/A	13.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.24 %
Unclassified	root	N/A	13.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.32 %
Unclassified	root	N/A	13.76 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.92 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	63.30 %
Unclassified	root	N/A	13.76 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.30 %
Unclassified	root	N/A	13.76 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	56.88 %
Unclassified	root	N/A	13.76 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.92 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.92 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.92 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
unclassified Symbiodinium	no rank	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium	0.92 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.76 %
Symbiodinium sp. KB8	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	0.92 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_106435279	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300000956\|JGI10216J12902_107005748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	593	Open in IMG/M
3300005168\|Ga0066809_10239487	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	503	Open in IMG/M
3300005981\|Ga0081538_10038770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3067	Open in IMG/M
3300005981\|Ga0081538_10291903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300006049\|Ga0075417_10044760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1889	Open in IMG/M
3300006194\|Ga0075427_10033181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	852	Open in IMG/M
3300006196\|Ga0075422_10310678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	678	Open in IMG/M
3300006846\|Ga0075430_100527882	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300006846\|Ga0075430_101664213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	524	Open in IMG/M
3300006853\|Ga0075420_100109576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2434	Open in IMG/M
3300006904\|Ga0075424_100732787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1055	Open in IMG/M
3300006969\|Ga0075419_10250162	Not Available	1184	Open in IMG/M
3300009100\|Ga0075418_10833770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	996	Open in IMG/M
3300009147\|Ga0114129_10283699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2212	Open in IMG/M
3300009147\|Ga0114129_12544047	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300009156\|Ga0111538_12259467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	683	Open in IMG/M
3300009789\|Ga0126307_10537480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	943	Open in IMG/M
3300009789\|Ga0126307_10619119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	874	Open in IMG/M
3300009816\|Ga0105076_1100864	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300009840\|Ga0126313_10018844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4553	Open in IMG/M
3300009840\|Ga0126313_11262699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300009840\|Ga0126313_11322393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300009840\|Ga0126313_11455947	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300010041\|Ga0126312_11493966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300010042\|Ga0126314_10349531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1060	Open in IMG/M
3300010042\|Ga0126314_10382015	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300010042\|Ga0126314_10450357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	931	Open in IMG/M
3300010042\|Ga0126314_11040274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	608	Open in IMG/M
3300010042\|Ga0126314_11128069	Not Available	584	Open in IMG/M
3300010044\|Ga0126310_11068560	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300010044\|Ga0126310_11308947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300010166\|Ga0126306_10801797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300010166\|Ga0126306_11183165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	628	Open in IMG/M
3300018028\|Ga0184608_10112963	Not Available	1145	Open in IMG/M
3300018066\|Ga0184617_1097105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	819	Open in IMG/M
3300018081\|Ga0184625_10187689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300018081\|Ga0184625_10203484	Not Available	1037	Open in IMG/M
3300018466\|Ga0190268_11753586	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300020003\|Ga0193739_1174351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300027809\|Ga0209574_10363416	Not Available	508	Open in IMG/M
3300027907\|Ga0207428_10194210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1529	Open in IMG/M
3300027909\|Ga0209382_11573859	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300028589\|Ga0247818_10391734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	935	Open in IMG/M
3300028596\|Ga0247821_10345522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	917	Open in IMG/M
3300028707\|Ga0307291_1004004	All Organisms → cellular organisms → Bacteria	3150	Open in IMG/M
3300028708\|Ga0307295_10114189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	734	Open in IMG/M
3300028719\|Ga0307301_10154083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	740	Open in IMG/M
3300028719\|Ga0307301_10304631	Not Available	522	Open in IMG/M
3300028721\|Ga0307315_10312042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300028722\|Ga0307319_10144624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	770	Open in IMG/M
3300028744\|Ga0307318_10234490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	637	Open in IMG/M
3300028754\|Ga0307297_10306354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	574	Open in IMG/M
3300028771\|Ga0307320_10150440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	900	Open in IMG/M
3300028791\|Ga0307290_10265223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	629	Open in IMG/M
3300028796\|Ga0307287_10077832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1242	Open in IMG/M
3300028796\|Ga0307287_10089843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1155	Open in IMG/M
3300028796\|Ga0307287_10110230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1040	Open in IMG/M
3300028799\|Ga0307284_10252568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	702	Open in IMG/M
3300028807\|Ga0307305_10541096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	520	Open in IMG/M
3300028810\|Ga0307294_10284904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300028814\|Ga0307302_10022898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2838	Open in IMG/M
3300028880\|Ga0307300_10191705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	659	Open in IMG/M
3300028881\|Ga0307277_10415414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	602	Open in IMG/M
3300028885\|Ga0307304_10239027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	788	Open in IMG/M
3300028889\|Ga0247827_10956717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	579	Open in IMG/M
3300030499\|Ga0268259_10102888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	641	Open in IMG/M
3300030499\|Ga0268259_10195112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300030514\|Ga0268253_10265311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583	Open in IMG/M
3300031548\|Ga0307408_102039704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	552	Open in IMG/M
3300031731\|Ga0307405_10236530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1350	Open in IMG/M
3300031731\|Ga0307405_10397729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1077	Open in IMG/M
3300031731\|Ga0307405_11335966	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300031824\|Ga0307413_10494960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	980	Open in IMG/M
3300031824\|Ga0307413_10877467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300031824\|Ga0307413_11608126	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031824\|Ga0307413_12117956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300031901\|Ga0307406_10562909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	934	Open in IMG/M
3300031901\|Ga0307406_11701832	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300031903\|Ga0307407_10104691	All Organisms → cellular organisms → Bacteria	1764	Open in IMG/M
3300031903\|Ga0307407_10203330	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300031903\|Ga0307407_10739114	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300031903\|Ga0307407_11700133	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031938\|Ga0308175_102832488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	542	Open in IMG/M
3300031995\|Ga0307409_100205859	All Organisms → cellular organisms → Bacteria	1764	Open in IMG/M
3300031995\|Ga0307409_101238997	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300032002\|Ga0307416_100224924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1803	Open in IMG/M
3300032002\|Ga0307416_100606498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1175	Open in IMG/M
3300032002\|Ga0307416_100863182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1004	Open in IMG/M
3300032002\|Ga0307416_101396911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	806	Open in IMG/M
3300032002\|Ga0307416_101506553	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300032002\|Ga0307416_102805294	Not Available	583	Open in IMG/M
3300032002\|Ga0307416_102805612	Not Available	583	Open in IMG/M
3300032002\|Ga0307416_103364794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300032126\|Ga0307415_100080621	All Organisms → cellular organisms → Bacteria	2322	Open in IMG/M
3300032126\|Ga0307415_101254386	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300032126\|Ga0307415_101816548	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300032159\|Ga0268251_10270866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	694	Open in IMG/M
3300033550\|Ga0247829_10372834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1170	Open in IMG/M
3300034172\|Ga0334913_063829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	777	Open in IMG/M
3300034174\|Ga0334932_015393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1266	Open in IMG/M
3300034174\|Ga0334932_051131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	706	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.29%
Host-Associated	Host-Associated	47.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.62%
Plants	Host-Associated → Plants	47.71%
Aquatic	Environmental → Aquatic	3.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	41.28%
Sediment	Environmental → Aquatic → Sediment	3.67%
Phylloplane	Host-Associated → Plants → Phylloplane	2.75%
Roots	Host-Associated → Plants → Roots	1.83%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	41.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.75%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.83%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.83%
Sand	Environmental → Terrestrial → Soil → Sand	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	41.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.53%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	2.75%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	26.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.02%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.67%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	2.75%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.83%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1064352791	3300000956	Soil	MSDPTPVGELLPEVLAEVIDRAGPGYARWAELVAQAGYCHHPI
JGI10216J12902_1070057482	3300000956	Soil	MTEPVRVGELLPGVLAEVVDRAGNGYQRWAELVAQAGYCH
Ga0066809_102394872	3300005168	Soil	MTEPTRVGRVLPEVLAEVIDRAGPDYDRWMELVAQTGYCAHPV
Ga0081538_100387702	3300005981	Tabebuia Heterophylla Rhizosphere	MTAPVRVGEVLPAVVAEAIARAGHGDDRWMEVAATGSCAHPVRTATVVPVPL*
Ga0081538_102919031	3300005981	Tabebuia Heterophylla Rhizosphere	MTDPVRVGELVPGVLGEVVDRAGHGYERWAELVAQAGYCHHPIRL
Ga0075417_100447604	3300006049	Populus Rhizosphere	MTDPVRVGELLPGVLAEVVDRAGHGYERWAEQVAATGYCTHPVRLRG
Ga0075427_100331811	3300006194	Populus Rhizosphere	MTEPTRVGEVLPGVLAEVIERAGRGYDRWAELVAQAGYCHHPIRLA
Ga0075422_103106782	3300006196	Populus Rhizosphere	MTEPTRVGEVLPGVLAEVIERAGRGYDRWAELVAQ
Ga0075430_1005278821	3300006846	Populus Rhizosphere	MSEPVQVGELLPGVLQEVIERAGPGYERWAEQVAA
Ga0075430_1016642131	3300006846	Populus Rhizosphere	MTDPVRVSELLPGVLGEVVDRAGHGYERWAELVAQAGYC
Ga0075420_1001095764	3300006853	Populus Rhizosphere	MTDPVRVGELLPSVLGEVVDRAGAGYERWMELVAQAGYCHHPIRLA
Ga0075424_1001846331	3300006904	Populus Rhizosphere	MTEPVLVGELLPGVLQEVIDRAGPGYDRWAEQVAATGYCAHPVRLRAGSSTPTLRPG
Ga0075424_1007327871	3300006904	Populus Rhizosphere	MTDPSRVGELLPGVLAEVVDRAGHGYQRWVELVAQAGYCHHPIRLA
Ga0075419_102501621	3300006969	Populus Rhizosphere	MTDPVRVGELLPGVLAEVVDRAGHGYARWAEQVAATGYCAH
Ga0075418_108337702	3300009100	Populus Rhizosphere	MTEPVRVGALLPGVLGELVDRAGDGYGRWMELVAQAGYC
Ga0114129_102836994	3300009147	Populus Rhizosphere	MTEPVPVGELLPAVVAEAIERAGPGYDRWAEQVAATG*
Ga0114129_125440471	3300009147	Populus Rhizosphere	MSEPALVGELLPGVLQEVIARAGPGYDRWAEQVAATGYCAHP
Ga0111538_122594672	3300009156	Populus Rhizosphere	MTEPVRVGELLPGVLGEVVERAGHGYARWAELVAQA
Ga0075423_101465715	3300009162	Populus Rhizosphere	MTEPVLVGELLPGVLQEVIDRAGPGYDRWAEQVAATGYCAHPVRLRAGSSTPTLRPGRSARS
Ga0126307_105374801	3300009789	Serpentine Soil	MTDPVRVGELLPAVVAELVDRAGHGYDRWAELVAQA
Ga0126307_106191192	3300009789	Serpentine Soil	MSEPTQVGEVLPGVLAEVVDRAGHGYDRWAELVA*
Ga0105076_11008642	3300009816	Groundwater Sand	MSDPVQVGELLPDVLQEVVQRAGHGYDRWAELVAQAGYCH
Ga0126313_100188447	3300009840	Serpentine Soil	MTEPSLVGELLPGVLQEVIDRAGPSYERWAEQVAATGY
Ga0126313_111008241	3300009840	Serpentine Soil	MSEPMPVGAVLPGVLAEVVDRAGAGYDRWMELVAQAGYCHHPIR
Ga0126313_112626992	3300009840	Serpentine Soil	MNEPARVGELLPGVLGELVERAGHGYDRWAELVAQAGY
Ga0126313_113223931	3300009840	Serpentine Soil	MSEPVRVGELLPGVLGEVVDRAGPGYARWMELVAQAG
Ga0126313_114559471	3300009840	Serpentine Soil	MTDPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGYCVHPVRLRGTV
Ga0126312_114939662	3300010041	Serpentine Soil	MTDPVRVGELLPGVLTEVVDRAGNGYERWAEQVAATGYCA
Ga0126314_103495312	3300010042	Serpentine Soil	VTGPVRVGELVPGVLGEVVERAGHGYDRWAELVAQAG*
Ga0126314_103820151	3300010042	Serpentine Soil	MTEPVLVGEVLPGVVAEAIARAGPGYDRWMEQVAATGY
Ga0126314_104503573	3300010042	Serpentine Soil	MTEPVRVGEVLPEVVAEAIARAGPGYDRWMEQVAQTG
Ga0126314_110402741	3300010042	Serpentine Soil	MSQPVQVGELLPGVVAEAIARAGPGYDRWAEQVAATGYCAHP
Ga0126314_111280692	3300010042	Serpentine Soil	MTEPVRVGEVLPEVVAEAIARAGPGYDRWMEQVAQTGY
Ga0126310_110685602	3300010044	Serpentine Soil	MTEPTRVGDVLPAVLAEVVDRAGAGYERWMELVAQ
Ga0126310_113089471	3300010044	Serpentine Soil	MTEPERVGELLPGVLGEVVDRAGHGYQRWAELVAQAGYCHHPIR
Ga0126306_108017972	3300010166	Serpentine Soil	MRVGDVLPEVLAEVVDRAGHGYDRWRELVAQAGYCHHPI
Ga0126306_111831651	3300010166	Serpentine Soil	MIEPVRVGELLPGVLDEVVDRAGHGYQRWAELVAQAGYCHHPIRL
Ga0184608_101129633	3300018028	Groundwater Sediment	MTGPVRVGEVLPEVVAEAIARAGPDYDRWMELVAQKGYCAHPVRL
Ga0184617_10971052	3300018066	Groundwater Sediment	MSEPARVGELLPGVPGEVVERAGHGYERWAELVAQAGYCHHP
Ga0184625_101876893	3300018081	Groundwater Sediment	VTEPVRVGELLPGVIGEVVDRAGHGYDRWMELVAQAGYCHHPIRL
Ga0184625_102034842	3300018081	Groundwater Sediment	MTEPVRVGELLPDVLGELVERAGHGYERWAELVAQAGYCH
Ga0190268_117535861	3300018466	Soil	MSEPMAVGELLPGVLQEVIDRAGAGYERWAEQVAATGYCAHPVRLRGR
Ga0193739_11743512	3300020003	Soil	MTEPIQVGELLPGVVAEAIARAGPGYDRWMEQVAATGYCTHPVRLRG
Ga0209574_103634162	3300027809	Agave	VSEPVRVGELLPGVVGELVERAGHGYERWAELVAQAGYCHHP
Ga0207428_101942101	3300027907	Populus Rhizosphere	MTEPVRVGELLPGVLAEVVDRAGHGYSRWAELVAQAGYC
Ga0209382_115738591	3300027909	Populus Rhizosphere	MSEPVLVGELLPGVLQEVIERAGPGYERWAEQVAATGYCAH
Ga0247818_103917341	3300028589	Soil	MTEPTRVGELLPGVLGEVIDRAGHGYERWATSSAHRS
Ga0247821_103455221	3300028596	Soil	MTEPVRVGELLPGVLGEVVDRAGHGYDRWAELVAQA
Ga0307291_10040041	3300028707	Soil	MSEPARVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYC
Ga0307295_101141892	3300028708	Soil	MTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGYCTH
Ga0307301_101540831	3300028719	Soil	VTDPARVGELLPGVLGEVVDRAGQGYDRWAELVAQAGYC
Ga0307301_103046311	3300028719	Soil	MSDPVRVGELVPGVLGEVVERAGHGYDRWAELVAQAGYCH
Ga0307315_103120421	3300028721	Soil	MTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGYCTHP
Ga0307319_101446242	3300028722	Soil	MIEPVRVGEVLPGVLAEVVERAGRGYDRWAELVAQAGY
Ga0307319_102056462	3300028722	Soil	MTEPVRVGELLPDVLGELVERAGHGYERWAELVAQAGYCHHPIRLAG
Ga0307318_102344901	3300028744	Soil	MEPIQVGELLPGVLQEVIDRAGPGYERWAEQVAATGYCAHPVRLR
Ga0307297_103063542	3300028754	Soil	VTEPTRVGELLPGVLGEVVDRAGHGYDRWAELVAQA
Ga0307320_101504401	3300028771	Soil	MTDPVRVGELLPGVLAEVVDRAGHGYDRWAEQVAATGYCTHPVRLRG
Ga0307290_102652231	3300028791	Soil	MSEPVGVGELLPGVLGEVVDRAGPGYDRWMELVAQ
Ga0307287_100778322	3300028796	Soil	MTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGY
Ga0307287_100898431	3300028796	Soil	MTEPVQVGELLPGVLGEVVERAGHGYERWAELVAQAGY
Ga0307287_101102302	3300028796	Soil	MTEPVRVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYCHHPIRLA
Ga0307284_102525682	3300028799	Soil	MTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATG
Ga0307305_105410962	3300028807	Soil	MTEPTRVGELVLGVLGEVVERAGHGYERWAELVAQAGYCHHPIR
Ga0307294_102849041	3300028810	Soil	MTDPVGVGELLPGVLAEVVDRAGHGYQRWAELVAQAGY
Ga0307302_100228984	3300028814	Soil	MSEPVLVGELLPEVVAEAIARAGPGYDRWMEQVTAT
Ga0307310_106616621	3300028824	Soil	VTEPTRVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYCHHPIRLAG
Ga0307300_101917052	3300028880	Soil	MSEPARVGELLPGVPGEVVERAGHGYERWAELVAQA
Ga0307277_104154141	3300028881	Soil	MTEPVRVGELLPGVLGEVVDRAGHGYERWAELVAQVGYCH
Ga0307304_102390272	3300028885	Soil	MTDPVRVGELLPGVLAEVVDRAGHGYDRWAEQVAATGYCTHPVGLRG
Ga0247827_109567171	3300028889	Soil	VTEPVRVGELLPGVIGEVVDRAGHGYERWTELVAQAGYCHHPI
Ga0268259_101028881	3300030499	Agave	MTEPIRVGEALPGVLAEVVDRAGHGYERWAELVAQAG
Ga0268259_101951122	3300030499	Agave	VSEPIQVGELLPGVLQEVIDRAGPDYDRWAEQVAATGYCAHPVR
Ga0268253_102653111	3300030514	Agave	VSEPVRVGELLPGVVGELVERAGHGYERWAELVAQAGYCHHPIRL
Ga0307408_1020397041	3300031548	Rhizosphere	MTEPVRVGELLPGVLGELVDRAGHGYERWAELVAQAG
Ga0307405_102365301	3300031731	Rhizosphere	VTEPVQVGELLPGVLGEVVDRAGHGYERWAELVAQAGYCHHP
Ga0307405_103977291	3300031731	Rhizosphere	MTEPARVGEMLPGVLAEVVDRAGHGYDRWAELVAQAGYCHH
Ga0307405_113359662	3300031731	Rhizosphere	MSQPVQVGELLPEVLAEVIQRAGNRYDRWAEQVAAT
Ga0307413_104949601	3300031824	Rhizosphere	MSEPMPVGAVLPGVLAEVVDRAGAGYDRWMELVAQAGFCHHPIR
Ga0307413_108774671	3300031824	Rhizosphere	VTEPVQVGELLPGVLGEVVDRAGVGYDRWAELVAQAGYCHHPI
Ga0307413_116081261	3300031824	Rhizosphere	MTEPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGYCVH
Ga0307413_121179561	3300031824	Rhizosphere	MTDPVRVGELLPDVLAEVIDRAGHGYERWAELVAQAGYCH
Ga0307410_104035081	3300031852	Rhizosphere	MSEPIQVGELVPGVLGELVDRAGAGYARWAELVAQAGYCHHPIRLA
Ga0307406_105629092	3300031901	Rhizosphere	MTEPSLVGELLPGVLQEVIDRAGPSYERWAEQVAATGYCAH
Ga0307406_117018321	3300031901	Rhizosphere	MTEPARVGELLPEVLQEVVQRAGHGYDRWAELVAQAGYCHH
Ga0307407_101046911	3300031903	Rhizosphere	MTEPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGY
Ga0307407_102033303	3300031903	Rhizosphere	MSEPALVAELLPGVLQEVIDRAGPGYERWAEQVAATGYCTHPVR
Ga0307407_107391143	3300031903	Rhizosphere	MTDPTRVGELLPSVLGEVVERAGHGYERWAELVAQAGY
Ga0307407_117001331	3300031903	Rhizosphere	MTDPVLIGELLPEVVAEAIARAGPGYDRWAEQVAATG
Ga0308175_1028324882	3300031938	Soil	MSEPARVGEVVPGVLAEVIGRAGHGYARWAELVAQAGY
Ga0307409_1002058593	3300031995	Rhizosphere	MSEPAQVGDVLPGVLAEVIDRAGHGYARWAELVAQA
Ga0307409_1012389971	3300031995	Rhizosphere	MTDPARVGDVLPGVLAEVVDRAGHGYDRWAELVAQAG
Ga0307416_1002249243	3300032002	Rhizosphere	MSEPARVGELLPGVLGEVVDRAGHGYERWAELVAQAGYCHHPI
Ga0307416_1006064981	3300032002	Rhizosphere	MTDPVRVGELLPGVLAEVVDRAGHGYERWAELVAQAGYCHHPIRLA
Ga0307416_1008631821	3300032002	Rhizosphere	MTEPVRVGELLPGVVAELVERAEHGYDRWAELVAQAGYCHHPIR
Ga0307416_1013969112	3300032002	Rhizosphere	MSQPVQVGELLPGVVAEAIARAGPGYDRWAEQVAATGY
Ga0307416_1015065532	3300032002	Rhizosphere	MTQPTRVGELLPGVLGEVVDRAGHGYQRWAELVAQAGYCHHPIR
Ga0307416_1028052941	3300032002	Rhizosphere	VSGPVLVGELLPKVLAEVVQRGGPGYGRWAELVAQAGYCHHPI
Ga0307416_1028056121	3300032002	Rhizosphere	MTEPVRVGEVLPEVIAEAIARAGPGYARWMELVAQTGYCTH
Ga0307416_1033647942	3300032002	Rhizosphere	VTEPTRVRELLPGVLEEVVDRAAHSYDRWAELVAQ
Ga0307415_1000806214	3300032126	Rhizosphere	MSEPAQVGDVLPGVLAEVIDRAGHGYARWADLVAQAG
Ga0307415_1012543861	3300032126	Rhizosphere	MSDPALVGDVLPGVVAEAIARAGPGYDRWMEQVAATGYCTH
Ga0307415_1018165482	3300032126	Rhizosphere	MSEPVAVGELLPGVLQEVIDRAGPGYDRWAEQVAATG
Ga0307415_1021964471	3300032126	Rhizosphere	VTGPVRVGELLPGVVAELVERAGHGYDRWAELVAQAGYCHHPIRLAG
Ga0268251_102708661	3300032159	Agave	MSAPALVAELLPGVLQEVIDRAGPGYDRWAEQIAAT
Ga0247829_103728342	3300033550	Soil	MNEPTRVGDVLPGVLAEVVDRAGRGYDRWAALALPS
Ga0334913_063829_671_775	3300034172	Sub-Biocrust Soil	MTEPTRVGELLPGVLQEVIDRAGPGYDRWAEQVAA
Ga0334932_015393_2_139	3300034174	Sub-Biocrust Soil	VREPIQVGELLPGVLQEVIDRAGPGYEQWAEQVAATGYCAHPVRLR
Ga0334932_051131_2_112	3300034174	Sub-Biocrust Soil	MTDPVRVGELLPGVLAEVVDRAGYGYDRWAELVAQAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089146

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences