Metagenome / Metatranscriptome Family F089129

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089129
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	74 residues
Representative Sequence	MFTKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY
Number of Associated Samples	91
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.19 %
% of genes near scaffold ends (potentially truncated)	34.86 %
% of genes from short scaffolds (< 2000 bps)	73.39 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.716 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (20.183 % of family members)
Environment Ontology (ENVO)	Unclassified (39.450 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.890 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 16.88% β-sheet: 0.00% Coil/Unstructured: 83.12%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02880	PGM_PMM_III	5.50
PF00709	Adenylsucc_synt	3.67
PF00266	Aminotran_5	2.75
PF00743	FMO-like	1.83
PF08281	Sigma70_r4_2	1.83
PF13361	UvrD_C	0.92
PF02673	BacA	0.92
PF01425	Amidase	0.92
PF01734	Patatin	0.92
PF00691	OmpA	0.92
PF07676	PD40	0.92
PF06480	FtsH_ext	0.92
PF00408	PGM_PMM_IV	0.92
PF00809	Pterin_bind	0.92
PF02469	Fasciclin	0.92
PF00313	CSD	0.92
PF00106	adh_short	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	6.42
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	6.42
COG0104	Adenylosuccinate synthase	Nucleotide transport and metabolism [F]	3.67
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	1.83
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.92
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.92
COG1968	Undecaprenyl pyrophosphate phosphatase	Lipid transport and metabolism [I]	0.92
COG2335	Uncaracterized surface protein containing fasciclin (FAS1) repeats	General function prediction only [R]	0.92
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.92
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
All Organisms	root	All Organisms	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
cellular organisms	root	All Organisms → cellular organisms	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.37 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.86 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.19 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.85 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.92 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	10.09 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	8.26 %
Tepidamorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Sutterellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sutterellaceae	0.92 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.92 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.26 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	8.26 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.83 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	0.92 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Sutterella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sutterellaceae → Sutterella	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	8.26 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.26 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.83 %
Lutibaculum baratangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum → Lutibaculum baratangense	0.92 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sutterellaceae → Sutterella → environmental samples	0.92 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.72 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	8.26 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.26 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.83 %
Sutterella sp. CAG:351	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sutterellaceae → Sutterella → environmental samples → Sutterella sp. CAG:351	0.92 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.92 %
Lutibaculum baratangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum → Lutibaculum baratangense	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17047503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	5170	Open in IMG/M
2088090015\|GPICI_8718545	Not Available	2333	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig177808	Not Available	581	Open in IMG/M
2170459018\|G1P06HT01EOH50	Not Available	658	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101687659	Not Available	1133	Open in IMG/M
3300000955\|JGI1027J12803_106113946	Not Available	518	Open in IMG/M
3300000956\|JGI10216J12902_103424978	Not Available	544	Open in IMG/M
3300001431\|F14TB_100179699	Not Available	1599	Open in IMG/M
3300004156\|Ga0062589_100686856	All Organisms → cellular organisms → Bacteria → Proteobacteria	906	Open in IMG/M
3300004156\|Ga0062589_101513428	Not Available	660	Open in IMG/M
3300004157\|Ga0062590_100501064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1035	Open in IMG/M
3300004157\|Ga0062590_102298629	Not Available	567	Open in IMG/M
3300004463\|Ga0063356_100253437	Not Available	2136	Open in IMG/M
3300004463\|Ga0063356_106026282	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300004479\|Ga0062595_101824821	Not Available	579	Open in IMG/M
3300004479\|Ga0062595_102414595	Not Available	522	Open in IMG/M
3300004480\|Ga0062592_100314782	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300004480\|Ga0062592_100448404	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300004643\|Ga0062591_102028923	Not Available	594	Open in IMG/M
3300004785\|Ga0058858_1422901	Not Available	642	Open in IMG/M
3300004801\|Ga0058860_12035885	Not Available	663	Open in IMG/M
3300005328\|Ga0070676_10005949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6511	Open in IMG/M
3300005332\|Ga0066388_101487027	Not Available	1183	Open in IMG/M
3300005338\|Ga0068868_100081384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2596	Open in IMG/M
3300005341\|Ga0070691_10007468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5011	Open in IMG/M
3300005343\|Ga0070687_100002324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	7079	Open in IMG/M
3300005344\|Ga0070661_100001249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17846	Open in IMG/M
3300005354\|Ga0070675_100668304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	945	Open in IMG/M
3300005406\|Ga0070703_10513674	Not Available	541	Open in IMG/M
3300005435\|Ga0070714_100004219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum → Lutibaculum baratangense	10828	Open in IMG/M
3300005440\|Ga0070705_100103534	Not Available	1803	Open in IMG/M
3300005458\|Ga0070681_11214573	Not Available	676	Open in IMG/M
3300005518\|Ga0070699_100137472	All Organisms → cellular organisms → Bacteria	2156	Open in IMG/M
3300005535\|Ga0070684_100297431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1481	Open in IMG/M
3300005549\|Ga0070704_100801545	Not Available	842	Open in IMG/M
3300005719\|Ga0068861_100004395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	9448	Open in IMG/M
3300005841\|Ga0068863_100008056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10289	Open in IMG/M
3300005843\|Ga0068860_100849318	Not Available	928	Open in IMG/M
3300006196\|Ga0075422_10245094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	752	Open in IMG/M
3300006358\|Ga0068871_101051546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	760	Open in IMG/M
3300006806\|Ga0079220_10017421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2955	Open in IMG/M
3300006844\|Ga0075428_100293553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1748	Open in IMG/M
3300006844\|Ga0075428_100675812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1100	Open in IMG/M
3300006845\|Ga0075421_101192366	Not Available	850	Open in IMG/M
3300006845\|Ga0075421_102056397	Not Available	607	Open in IMG/M
3300006846\|Ga0075430_100062307	All Organisms → cellular organisms → Bacteria	3134	Open in IMG/M
3300006854\|Ga0075425_100777996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1097	Open in IMG/M
3300006854\|Ga0075425_100779697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1096	Open in IMG/M
3300006854\|Ga0075425_101693824	Not Available	711	Open in IMG/M
3300006903\|Ga0075426_10204332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1432	Open in IMG/M
3300006969\|Ga0075419_10903251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300009036\|Ga0105244_10272051	Not Available	787	Open in IMG/M
3300009092\|Ga0105250_10313362	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	681	Open in IMG/M
3300009094\|Ga0111539_13134931	Not Available	533	Open in IMG/M
3300009147\|Ga0114129_13132438	Not Available	540	Open in IMG/M
3300009156\|Ga0111538_10091400	All Organisms → cellular organisms → Bacteria → Proteobacteria	3870	Open in IMG/M
3300009156\|Ga0111538_12426834	Not Available	658	Open in IMG/M
3300009162\|Ga0075423_10026766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	5792	Open in IMG/M
3300009162\|Ga0075423_10253899	Not Available	1842	Open in IMG/M
3300009162\|Ga0075423_10432861	Not Available	1381	Open in IMG/M
3300009162\|Ga0075423_11077963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	855	Open in IMG/M
3300010373\|Ga0134128_10632508	Not Available	1190	Open in IMG/M
3300010397\|Ga0134124_10002042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	16229	Open in IMG/M
3300010401\|Ga0134121_10136245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2084	Open in IMG/M
3300012899\|Ga0157299_10077687	Not Available	811	Open in IMG/M
3300012902\|Ga0157291_10005258	Not Available	2002	Open in IMG/M
3300012910\|Ga0157308_10002120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	3703	Open in IMG/M
3300013102\|Ga0157371_10486572	Not Available	910	Open in IMG/M
3300013104\|Ga0157370_11212106	Not Available	681	Open in IMG/M
3300013296\|Ga0157374_12178472	Not Available	581	Open in IMG/M
3300013297\|Ga0157378_11275260	Not Available	775	Open in IMG/M
3300013297\|Ga0157378_11780260	Not Available	664	Open in IMG/M
3300014325\|Ga0163163_10108865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2798	Open in IMG/M
3300014325\|Ga0163163_11958045	Not Available	646	Open in IMG/M
3300014326\|Ga0157380_10000662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	21369	Open in IMG/M
3300014968\|Ga0157379_11158750	Not Available	742	Open in IMG/M
3300015371\|Ga0132258_12203759	Not Available	1383	Open in IMG/M
3300015372\|Ga0132256_100665810	Not Available	1156	Open in IMG/M
3300019361\|Ga0173482_10579342	Not Available	560	Open in IMG/M
3300019362\|Ga0173479_10100570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1070	Open in IMG/M
3300020069\|Ga0197907_10385245	Not Available	851	Open in IMG/M
3300020078\|Ga0206352_10741688	Not Available	827	Open in IMG/M
3300020078\|Ga0206352_10742579	Not Available	586	Open in IMG/M
3300020081\|Ga0206354_11445993	Not Available	917	Open in IMG/M
3300022726\|Ga0242654_10276441	Not Available	610	Open in IMG/M
3300025315\|Ga0207697_10039118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1946	Open in IMG/M
3300025711\|Ga0207696_1186625	Not Available	547	Open in IMG/M
3300025899\|Ga0207642_10247250	Not Available	1010	Open in IMG/M
3300025905\|Ga0207685_10750768	Not Available	534	Open in IMG/M
3300025914\|Ga0207671_10835165	Not Available	730	Open in IMG/M
3300025916\|Ga0207663_10681861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	813	Open in IMG/M
3300025920\|Ga0207649_10567569	Not Available	870	Open in IMG/M
3300025925\|Ga0207650_11767089	Not Available	523	Open in IMG/M
3300025926\|Ga0207659_10077749	All Organisms → cellular organisms → Bacteria	2443	Open in IMG/M
3300025929\|Ga0207664_10004674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	9293	Open in IMG/M
3300025981\|Ga0207640_11205685	Not Available	673	Open in IMG/M
3300025986\|Ga0207658_10106025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2211	Open in IMG/M
3300026088\|Ga0207641_10051575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	3484	Open in IMG/M
3300027907\|Ga0207428_10455969	Not Available	932	Open in IMG/M
3300027909\|Ga0209382_10715032	Not Available	1076	Open in IMG/M
3300028587\|Ga0247828_10381838	Not Available	805	Open in IMG/M
3300031716\|Ga0310813_10367426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sutterellaceae → Sutterella → environmental samples → Sutterella sp. CAG:351	1230	Open in IMG/M
3300031716\|Ga0310813_10883675	Not Available	809	Open in IMG/M
3300031892\|Ga0310893_10387835	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300032122\|Ga0310895_10292337	Not Available	768	Open in IMG/M
3300033412\|Ga0310810_11501039	Not Available	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.21%
Environmental	Environmental	45.87%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	51.38%
Terrestrial	Environmental → Terrestrial	45.87%
Human	Host-Associated → Human	1.83%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.09%
Roots	Host-Associated → Plants → Roots	2.75%
Digestive System	Host-Associated → Human → Digestive System	1.83%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.19%
Loam	Environmental → Terrestrial → Soil → Loam	12.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.34%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.75%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.01%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.75%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	20.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.83%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004785	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025711	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00042900	2088090014	Soil	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG
GPICI_02289790	2088090015	Soil	MSSKIAIGVAAVGLTLAAAALQPASANYAPCTENPAGAGCPGALTPIRPEGSVKPVPRHAMHAHNYRAPRPAPKG
KansclcFeb2_13369070	2124908045	Soil	MLTKTAIGFAVVALALAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAH
2MG_02671920	2170459018	Switchgrass, Maize And Mischanthus Litter	MLTKTAIGFAVVALALAAAAFQPASANYAPCVENPEGAGCPGALTTIKPQGSVRPAPSRHAMHAHNYRTQRPGTSAY
INPhiseqgaiiFebDRAFT_1016876593	3300000364	Soil	MSRKIAIGVAAVGLTLAAAALQPASANYAPCTENPAGAGCPGALTPIRPEGSVKPVPRHAMHAHNYRAPRPAPKG*
JGI1027J12803_1061139461	3300000955	Soil	MSTKISIGLAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHVMHAHNYRAHRPATSAY*
JGI10216J12902_1034249781	3300000956	Soil	IAIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
F14TB_1001796993	3300001431	Soil	MSSKIAIGVAAVGLTLAAAALQPASANYAPCTENPAGAGCPGALTPIRPEGSVKPVPRHAMHAHNYRAPRPAPKG*
Ga0062589_1006868562	3300004156	Soil	MSSKIAFGVAAVGLTLAVAALQPASANYAPCIENPAGAGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0062589_1015134281	3300004156	Soil	MSTKISIGLAAVALTLAAAAFQPASANYAPCYENPEGAGCPGALTPIKPEGSVRPAPSKHAMHAHNYRARRPATSTY*
Ga0062590_1005010641	3300004157	Soil	MFSKLMFSKIAIGVAAVGLTLSVAAVQPASANYAPCIENPAGPGCPGALTPIKPSVKAVPRHAMHAHAYRAPRSATKG*
Ga0062590_1022986292	3300004157	Soil	MFIKTAIGFAAVALTLAAVAVQPASANYAPCVDNPEGAGCPGALTIKPQGSVRPAPSRHAMHAHN
Ga0063356_1002534373	3300004463	Arabidopsis Thaliana Rhizosphere	MLTKIAIGVAAVVLALAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVKPAPSKHAMHAHNYRTHRPATSAY*
Ga0063356_1060262822	3300004463	Arabidopsis Thaliana Rhizosphere	AAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0062595_1018248212	3300004479	Soil	SLMFSKIAIGVAAVGLTLAAAAVQPASANYAPCTENPTAKGCPMYITPIKPQGSVKPVPRHAMHAHAYRATKG*
Ga0062595_1024145951	3300004479	Soil	MSSKIAFGVAAVGLTLAVAALQPASANYAPCIENPAGAGCPGALTPIKPSVKPVPRHAMHAHA
Ga0062592_1003147821	3300004480	Soil	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0062592_1004484042	3300004480	Soil	MFSKIAIGVAAVGLTLSVAAVQPASANYAPCIENPAGPGCPGALTPIKPSVKAVPRHAMHAHAYRAPRSATKG*
Ga0062591_1020289231	3300004643	Soil	MSSKISIGLAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVRPAPSKHAMHAHNYRAH
Ga0058858_14229011	3300004785	Host-Associated	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0058860_120358852	3300004801	Host-Associated	KISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0070676_100059491	3300005328	Miscanthus Rhizosphere	FNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0066388_1014870272	3300005332	Tropical Forest Soil	AAVGLALAAAAVQPASANYAPCGENPAGPGFPGALTPSKPSVKAVPRHAMHAHAYRGAVGD*
Ga0068868_1000813846	3300005338	Miscanthus Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCGENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0070691_100074682	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKAAPSKHAMHAHNYRAHRPATSTY*
Ga0070687_1000023246	3300005343	Switchgrass Rhizosphere	LMFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0070661_1000012496	3300005344	Corn Rhizosphere	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRTPRSATKG*
Ga0070675_1006683044	3300005354	Miscanthus Rhizosphere	MFTKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAHRPATSAY*
Ga0070703_105136741	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0070714_1000042195	3300005435	Agricultural Soil	MFNKIVIGVAAVGLTLAAAALQPATANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0070705_1001035343	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSPKISTGFAADALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0070681_112145733	3300005458	Corn Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRP
Ga0070699_1001374721	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMH
Ga0070684_1002974311	3300005535	Corn Rhizosphere	PRMSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0070704_1008015451	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	TLAGAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0068861_1000043951	3300005719	Switchgrass Rhizosphere	IAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0068863_1000080567	3300005841	Switchgrass Rhizosphere	MFNKIVIGVAAFGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0068860_1008493181	3300005843	Switchgrass Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHSVHAHNYRAHRPATSTY*
Ga0075417_105126352	3300006049	Populus Rhizosphere	ADVTRYWVFACSRGGYCPSKETHMLTKTAIGFAVVALALAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRTHRPATSAY*
Ga0075422_102450942	3300006196	Populus Rhizosphere	MFTKTALGFAVVALTLAATAFQPASANYAGALTIKPQGSVRPAPSRHAMHAHN
Ga0068871_1010515463	3300006358	Miscanthus Rhizosphere	MFTKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHA
Ga0079220_100174212	3300006806	Agricultural Soil	MFNKIVIGVAAVGLTLAAAAVQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0075428_1002935532	3300006844	Populus Rhizosphere	MLTKTAIGFAVVALALAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAHRPATSAY*
Ga0075428_1006758122	3300006844	Populus Rhizosphere	MLSKTAIALAAASLALGAASLTPAMANYAPCVENPEGAGCPGALTPIKPQGSVKPAPSKHAMHAHNYRAHRPAPSAY*
Ga0075421_1011923662	3300006845	Populus Rhizosphere	MLTKTAIGFAVVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAHRPATSAY*
Ga0075421_1020563973	3300006845	Populus Rhizosphere	MSTKISIGLVAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVRPAPSKHAMHAHNYRA
Ga0075430_1000623071	3300006846	Populus Rhizosphere	VAAVQPASANYAPCIENPAGPGCPGALTPIKPSVKAVPRHAMHAHAYRAPRSATKG*
Ga0075425_1007779962	3300006854	Populus Rhizosphere	MFSKIAIGVAAVGLTLAVAAVQPASANYAPCIENPAGPGCPGALTPIKPSVKAVPRHAMHAHAYRAPRSATKG*
Ga0075425_1007796973	3300006854	Populus Rhizosphere	MSTKISIGLVAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVRPAPSKHAMHAHNYRARRPATSTY*
Ga0075425_1016938241	3300006854	Populus Rhizosphere	MFTKTALGFAVVALTLAATAFQPASANYAPCVENPEGAGCPGALTIKPQGSVRPAPSRHAMHAHNYRTHRPATSAY*
Ga0075426_102043323	3300006903	Populus Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAHRPATSAY*
Ga0075419_109032511	3300006969	Populus Rhizosphere	MFTKTALGFAVVALTLAATAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAHRPAPSAY*
Ga0105244_102720512	3300009036	Miscanthus Rhizosphere	MLTKTAIGFAVVALALPAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0105250_103133621	3300009092	Switchgrass Rhizosphere	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSA
Ga0105250_105313641	3300009092	Switchgrass Rhizosphere	QGLECLLSRTGACSSKEFPLMFIKTAIGFAAVALTLAAVAVQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRTHRPATSAY*
Ga0111539_131349311	3300009094	Populus Rhizosphere	MSTKISIGLAAAAFTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVRPAPSKHAMHARNYRAHRPAPSAY*
Ga0114129_131324381	3300009147	Populus Rhizosphere	MFIKTAIGFAAVALTLAAVAVQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRTHRPATSAY*
Ga0111538_100914002	3300009156	Populus Rhizosphere	MSSKIAFGVAAVGLTLAVAAVQPASANYAPCIENPAGPGCPGALTPIKPSVKAVPRHAMHAHAYRAPRSATKG*
Ga0111538_124268342	3300009156	Populus Rhizosphere	MFTKTALGFAVVALTLAATAFQPASANYAPCVENPEGAGCPGALTIKPQGSVRPAPSRHAMYAHNYRTHRPATSAY*
Ga0075423_100267664	3300009162	Populus Rhizosphere	MFNKIVIGVAAVGLTLAAAAVQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRTPRSATKG*
Ga0075423_102538992	3300009162	Populus Rhizosphere	MLSKTAIALAAASLALGAASLTPAMANYAPCVENPEGAGCPGALTPIKPQGSVKPAPSKHTLHAHNYRAHRPAPSAY*
Ga0075423_104328612	3300009162	Populus Rhizosphere	MFTKTALGFAVVALTLAATAFQPASANYAPCVENPEGAGCPGEIKPQGSVRPAPSRHAMHAHNYRTHRPATSAY*
Ga0075423_110779633	3300009162	Populus Rhizosphere	MSTKISIGLVAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVRPAPTRHAMHAHN
Ga0134128_106325082	3300010373	Terrestrial Soil	MLTKTAIGFAVVALALPAAAFQPASANYAPCVENPEGAGCPGELKPIKPQGSVRPAPSRHAMHAHNCRTHRPATSTY*
Ga0134124_100020427	3300010397	Terrestrial Soil	MFNKIVIGVAAVGLTLAAAALQPASANYALCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0134121_101362455	3300010401	Terrestrial Soil	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALMPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0157293_103587281	3300012898	Soil	CLLASGGYCPSKETPMLTKTAIGFAVVALPLAAAAFQPASANYAPCIENPEGAGCPGALATIKPQGSVRPAPSKHAMHAHNYRAHRPATSAY*
Ga0157299_100776871	3300012899	Soil	MFNKIVIGVAAVGLTLAAAALQPASANYAPCIENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0157291_100052581	3300012902	Soil	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKAVPRHAMHAHAYRAPRSATEG*
Ga0157308_100021203	3300012910	Soil	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKAVPRHAMHAHAYRAPRSATKG*
Ga0157371_104865722	3300013102	Corn Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHN
Ga0157370_112121062	3300013104	Corn Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNY
Ga0157374_121784722	3300013296	Miscanthus Rhizosphere	MLTKTAIGFAVVALALAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPTRHAMHAHNYRTHRNKFACGLI*
Ga0157378_112752601	3300013297	Miscanthus Rhizosphere	MFIKTAIGFAAVALTLAAVAVQPASANYAPCVENPEGAGCPGELTPIKPQGSVRPAPTRHAMHAHNYRTHRPATSTY*
Ga0157378_117802601	3300013297	Miscanthus Rhizosphere	MLTKTAISVAAVALTLAAAACQPASANYAPCVENPEGAGCPGEIKPEGSVRPTPSKHAMHARNYRTHRPATSAY*
Ga0163163_101088655	3300014325	Switchgrass Rhizosphere	MSPKISTGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY*
Ga0163163_119580451	3300014325	Switchgrass Rhizosphere	MLSKTAIALAAASLALGAASLTPAMANYAPCVENPEGAGCPGALTPIKPQGSVKAAPSKHTLHAHNYRAHRPAPSAY*
Ga0157380_100006625	3300014326	Switchgrass Rhizosphere	MFNKIVIGVAAVGLTLAAAALQPASGNYAPCIENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG*
Ga0157379_111587501	3300014968	Switchgrass Rhizosphere	MFSKIAIGVAAVGLTLVVVAVQPASANYAPCIENPAGPGCPGALTPIKPSVKPVPRHGMHAHAYRAPRSATKG*
Ga0132258_122037592	3300015371	Arabidopsis Rhizosphere	MLTKTAIGFAVVALALAAAAFQPASANYALCVENPEGAGCPGAPTPIKPQGSVRPAPSRHAMHAHNYRAYRPATSAY*
Ga0132256_1006658102	3300015372	Arabidopsis Rhizosphere	MLTKTAIGFAVVALALAAAAFQPASANYALCVENPEGAGCPGAPTPIKPQGSVRPAPSRHAMHAHNYRAHRPATSAY*
Ga0173482_105793421	3300019361	Soil	AVALTVAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVRPAPSKHAMHAHNYRAHRPATSTY
Ga0173479_101005702	3300019362	Soil	MFSKLMFSKIAIGVAAVGLTLSVAAVQPASANYAPCIENPAGPGCPGALTPIKPPVKAVPRHAMHAHAYRAPRSATKG
Ga0197907_103852451	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY
Ga0206352_107416881	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	GFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY
Ga0206352_107425791	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MFTKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAHRPAASTY
Ga0206354_114459932	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKAAPSKHAMHAHNYRAHRPATSTY
Ga0242654_102764411	3300022726	Soil	LLRFWSFVSAPPRSLQARSPRMSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY
Ga0207697_100391185	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY
Ga0207696_11866251	3300025711	Switchgrass Rhizosphere	MFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYR
Ga0207642_102472503	3300025899	Miscanthus Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVKAAPSKHAMHAHNYRA
Ga0207685_107507681	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSSKIAFGVAAVGLTLAVAALQPASANYAPCIENPAGAGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG
Ga0207671_108351651	3300025914	Corn Rhizosphere	SPRMSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY
Ga0207663_106818612	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MFTKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPTRHAMHAHNYRTHRPATSAY
Ga0207649_105675692	3300025920	Corn Rhizosphere	SIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY
Ga0207650_117670891	3300025925	Switchgrass Rhizosphere	MFTKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSSHAMHAHNYRAHRPATSTY
Ga0207659_100777491	3300025926	Miscanthus Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHR
Ga0207664_100046745	3300025929	Agricultural Soil	MFNKIVIGVAAVGLTLAAAALQPATANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG
Ga0207640_112056851	3300025981	Corn Rhizosphere	MSPKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATAW
Ga0207658_101060252	3300025986	Switchgrass Rhizosphere	MFNKIVIGVTAFGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG
Ga0207641_100515752	3300026088	Switchgrass Rhizosphere	MFNKIVIGVAAFGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG
Ga0207428_104559691	3300027907	Populus Rhizosphere	MLTKTAIGFAVVALALAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAHRPATSAY
Ga0209382_107150321	3300027909	Populus Rhizosphere	MLTKTAIGFAVVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVRPAPSRHAMHAHNYRAHRPATSAY
Ga0247828_103818382	3300028587	Soil	MLTKIAIGVAAVVLALAAAAFQPASANYAPCVENPEGAGCPGALTPIKPQGSVKPAPSKHAMHAHNYRTHRPATSAY
Ga0310813_103674261	3300031716	Soil	MSSKIAIGVAAVELTLAAAALQPASANYAPCTENPAGAGCPGVLTPIRPEGSVKPVPRHAMHAHNYRAPRPAPKG
Ga0310813_108836751	3300031716	Soil	MSTKISIGLAAVALTLAAAAFQPASANYAPCYENPEGAGCPGALTPIKPEGSVRPAPSKHAMHAHNYRARRPATSTY
Ga0310893_103878351	3300031892	Soil	LMFNKIVIGVAAVGLTLAAAALQPASANYAPCVENPAGPGCPGALTPIKPSVKPVPRHAMHAHAYRAPRSATKG
Ga0310895_102923372	3300032122	Soil	MFTKISIGFAAVALTLAAAAFQPASANYAPCVENPEGAGCPGALTPIKPEGSVKPAPSKHAMHAHNYRAHRPATSTY
Ga0310810_115010392	3300033412	Soil	MSSKIAIGVAAVELTLAAAALQPASANYAPCTENPAGAGCPGALTPIRPEGLVKPVPRHAMHAHNYRAPRPAPKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089129

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences