Metagenome / Metatranscriptome Family F089115

Basic Information
Family ID	F089115
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	MAELKRKEEELTTADLASYGIPAKQPEGPKLVKGQEPETLD
Number of Associated Samples	103
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.33 %
% of genes near scaffold ends (potentially truncated)	79.82 %
% of genes from short scaffolds (< 2000 bps)	85.32 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Most Common Taxonomy
Group	Bacteria (94.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.174 % of family members)
Environment Ontology (ENVO)	Unclassified (31.193 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.624 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.70% β-sheet: 0.00% Coil/Unstructured: 91.30%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF05532	CsbD	1.83
PF04366	Ysc84	1.83
PF05368	NmrA	1.83
PF08212	Lipocalin_2	1.83
PF13545	HTH_Crp_2	0.92
PF08240	ADH_N	0.92
PF04226	Transgly_assoc	0.92
PF13565	HTH_32	0.92
PF00196	GerE	0.92
PF01734	Patatin	0.92
PF14236	DUF4338	0.92
PF13246	Cation_ATPase	0.92
PF01566	Nramp	0.92
PF00210	Ferritin	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	1.83
COG3040	Bacterial lipocalin Blc	Cell wall/membrane/envelope biogenesis [M]	1.83
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.83
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.92
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.92
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.92
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.92
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.50 %
Unclassified	root	N/A	4.59 %
Viruses	superkingdom	All Organisms → Viruses	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.50 %
Unclassified	root	N/A	4.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	82.57 %
Unclassified	root	N/A	4.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	78.90 %
Unclassified	root	N/A	4.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	77.98 %
Unclassified	root	N/A	4.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	77.06 %
Unclassified	root	N/A	4.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	7.34 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	4.59 %
Unclassified	root	N/A	4.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	4.59 %
Unclassified	root	N/A	4.59 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	4.59 %
Unclassified	root	N/A	4.59 %
Candidatus Koribacter versatilis Ellin345	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10038338	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2709	Open in IMG/M
3300000955\|JGI1027J12803_109693355	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	803	Open in IMG/M
3300003369\|JGI24140J50213_10070383	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300004092\|Ga0062389_101326633	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	905	Open in IMG/M
3300004631\|Ga0058899_10018144	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1401	Open in IMG/M
3300005468\|Ga0070707_102255030	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	512	Open in IMG/M
3300005526\|Ga0073909_10208091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	849	Open in IMG/M
3300005537\|Ga0070730_10165043	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1495	Open in IMG/M
3300005542\|Ga0070732_10991798	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	514	Open in IMG/M
3300005563\|Ga0068855_102558890	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	507	Open in IMG/M
3300005614\|Ga0068856_100850377	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	931	Open in IMG/M
3300005712\|Ga0070764_10688798	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	629	Open in IMG/M
3300005952\|Ga0080026_10178924	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	623	Open in IMG/M
3300005995\|Ga0066790_10278269	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	713	Open in IMG/M
3300006041\|Ga0075023_100027587	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300006224\|Ga0079037_100973051	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	839	Open in IMG/M
3300006237\|Ga0097621_100713649	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	924	Open in IMG/M
3300006795\|Ga0075520_1425734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	530	Open in IMG/M
3300009521\|Ga0116222_1170950	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	935	Open in IMG/M
3300009523\|Ga0116221_1158658	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	984	Open in IMG/M
3300009523\|Ga0116221_1191189	Not Available	888	Open in IMG/M
3300009615\|Ga0116103_1116511	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	669	Open in IMG/M
3300009634\|Ga0116124_1072883	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	987	Open in IMG/M
3300010373\|Ga0134128_10061415	All Organisms → cellular organisms → Bacteria → Acidobacteria	4323	Open in IMG/M
3300010379\|Ga0136449_101728417	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	941	Open in IMG/M
3300010396\|Ga0134126_10923302	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	981	Open in IMG/M
3300011089\|Ga0138573_1288800	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	565	Open in IMG/M
3300012988\|Ga0164306_11489307	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	579	Open in IMG/M
3300013105\|Ga0157369_10191612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2148	Open in IMG/M
3300013296\|Ga0157374_10662961	All Organisms → Viruses → Predicted Viral	1055	Open in IMG/M
3300013296\|Ga0157374_12449660	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	549	Open in IMG/M
3300013297\|Ga0157378_10977326	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	880	Open in IMG/M
3300013306\|Ga0163162_12546012	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	588	Open in IMG/M
3300014489\|Ga0182018_10013585	All Organisms → cellular organisms → Bacteria → Acidobacteria	5664	Open in IMG/M
3300014489\|Ga0182018_10114072	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300014501\|Ga0182024_10046395	All Organisms → cellular organisms → Bacteria	6990	Open in IMG/M
3300014502\|Ga0182021_12101491	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	680	Open in IMG/M
3300014839\|Ga0182027_11814659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	589	Open in IMG/M
3300017823\|Ga0187818_10038614	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2049	Open in IMG/M
3300017823\|Ga0187818_10198908	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	875	Open in IMG/M
3300017929\|Ga0187849_1227515	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	718	Open in IMG/M
3300017933\|Ga0187801_10454404	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	538	Open in IMG/M
3300017935\|Ga0187848_10447498	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	530	Open in IMG/M
3300017941\|Ga0187850_10212910	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	880	Open in IMG/M
3300017942\|Ga0187808_10173607	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	954	Open in IMG/M
3300017943\|Ga0187819_10394875	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	796	Open in IMG/M
3300018001\|Ga0187815_10028465	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	2371	Open in IMG/M
3300018007\|Ga0187805_10376862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	657	Open in IMG/M
3300018014\|Ga0187860_1211141	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	790	Open in IMG/M
3300018016\|Ga0187880_1210741	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	876	Open in IMG/M
3300018017\|Ga0187872_10277422	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	741	Open in IMG/M
3300018030\|Ga0187869_10120558	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300018057\|Ga0187858_10935429	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	509	Open in IMG/M
3300019255\|Ga0184643_1431938	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	576	Open in IMG/M
3300019888\|Ga0193751_1200479	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	668	Open in IMG/M
3300019890\|Ga0193728_1368542	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	508	Open in IMG/M
3300020063\|Ga0180118_1343012	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	727	Open in IMG/M
3300020583\|Ga0210401_10154217	All Organisms → cellular organisms → Bacteria	2146	Open in IMG/M
3300021180\|Ga0210396_10489890	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1076	Open in IMG/M
3300021181\|Ga0210388_10270372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1492	Open in IMG/M
3300021362\|Ga0213882_10252100	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300021401\|Ga0210393_11668620	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	504	Open in IMG/M
3300021407\|Ga0210383_10278525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1437	Open in IMG/M
3300021420\|Ga0210394_10346429	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1305	Open in IMG/M
3300021433\|Ga0210391_10032363	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4199	Open in IMG/M
3300021433\|Ga0210391_11164709	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	597	Open in IMG/M
3300021479\|Ga0210410_10393139	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300023088\|Ga0224555_1132088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	741	Open in IMG/M
3300024225\|Ga0224572_1112795	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	504	Open in IMG/M
3300025441\|Ga0208456_1024885	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300025446\|Ga0208038_1024140	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1405	Open in IMG/M
3300025460\|Ga0208562_1041043	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1036	Open in IMG/M
3300025482\|Ga0208715_1047827	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	782	Open in IMG/M
3300025496\|Ga0208191_1078006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	691	Open in IMG/M
3300025501\|Ga0208563_1038455	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1089	Open in IMG/M
3300025553\|Ga0208080_1025480	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300025650\|Ga0209385_1003542	All Organisms → cellular organisms → Bacteria → Acidobacteria	6736	Open in IMG/M
3300025854\|Ga0209176_10203619	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	509	Open in IMG/M
3300025927\|Ga0207687_10827536	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	790	Open in IMG/M
3300025931\|Ga0207644_10608912	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	907	Open in IMG/M
3300025942\|Ga0207689_11090692	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	673	Open in IMG/M
3300025981\|Ga0207640_11103371	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	702	Open in IMG/M
3300026078\|Ga0207702_10382788	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1353	Open in IMG/M
3300027497\|Ga0208199_1087056	Not Available	649	Open in IMG/M
3300027648\|Ga0209420_1096500	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	843	Open in IMG/M
3300027676\|Ga0209333_1203002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	522	Open in IMG/M
3300027745\|Ga0209908_10000301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4206	Open in IMG/M
3300027783\|Ga0209448_10057845	Not Available	1303	Open in IMG/M
3300027895\|Ga0209624_10398554	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	917	Open in IMG/M
3300027908\|Ga0209006_11479407	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	515	Open in IMG/M
3300027915\|Ga0209069_10950004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	524	Open in IMG/M
3300028776\|Ga0302303_10310553	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	530	Open in IMG/M
3300028800\|Ga0265338_10031533	All Organisms → cellular organisms → Bacteria	5194	Open in IMG/M
3300029636\|Ga0222749_10023182	All Organisms → cellular organisms → Bacteria → Acidobacteria	2584	Open in IMG/M
3300029910\|Ga0311369_11360501	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	539	Open in IMG/M
3300030862\|Ga0265753_1050620	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	737	Open in IMG/M
3300030879\|Ga0265765_1062367	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	529	Open in IMG/M
3300030880\|Ga0265776_101034	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1119	Open in IMG/M
3300031525\|Ga0302326_11681296	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	839	Open in IMG/M
3300031712\|Ga0265342_10309129	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300032160\|Ga0311301_11934317	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	693	Open in IMG/M
3300032180\|Ga0307471_102751179	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	624	Open in IMG/M
3300033402\|Ga0326728_10337426	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1339	Open in IMG/M
3300033405\|Ga0326727_10686129	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	823	Open in IMG/M
3300033433\|Ga0326726_10144735	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300033486\|Ga0316624_11083563	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	725	Open in IMG/M
3300033545\|Ga0316214_1007293	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1474	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.40%
Host-Associated	Host-Associated	15.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.80%
Aquatic	Environmental → Aquatic	26.61%
Plants	Host-Associated → Plants	15.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.46%
Freshwater	Environmental → Aquatic → Freshwater	24.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.26%
Peat	Environmental → Terrestrial → Peat	6.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.50%
Sediment	Environmental → Aquatic → Sediment	1.83%
Roots	Host-Associated → Plants → Roots	1.83%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.26%
Loam	Environmental → Terrestrial → Soil → Loam	6.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.17%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.34%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.34%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.42%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.34%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.42%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.50%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.75%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.83%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.92%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300025446	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100 (SPAdes)	Environmental	Open in IMG/M
3300025460	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300025553	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025854	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030880	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089115

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100383386	3300000567	Peatlands Soil	MAERKRKKGKLTATDLASYGITPMQPDKPKLVKGQEPETLDKAAAVSEPMP*
JGI1027J12803_1096933551	3300000955	Soil	MAELKRIEEEEVPSSELASAAFPAKEPEGPKLVKGPEPETLDKA
JGI24140J50213_100703831	3300003369	Arctic Peat Soil	MSELKTEELELTTADLASHGIAQKQPDEPRPVKAQAPETPN
Ga0062389_1013266333	3300004092	Bog Forest Soil	MAERKRKKGKLTAADLASYGITPMQPDKPELVKGQEPETLDKAAAVSEPMP*
Ga0058899_100181442	3300004631	Forest Soil	VAELERIEEELPTARLASDNIPAKQPEGPKLVKGQEPKPLD*
Ga0070707_1022550302	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAELKMKEEELTTSELASYGIPPKQPDGPRLVKSQESETRADSRRL*
Ga0073909_102080911	3300005526	Surface Soil	MAELKTVKKEVSTADLASCGIPARQMERPKLVKGQE
Ga0070730_101650433	3300005537	Surface Soil	MAELKTKEEEVTTADLAGYGIAQQQADGPKLVKDRKPVTLD
Ga0070732_109917981	3300005542	Surface Soil	MAELKIKEEDLTTGELAGYGVEQKLPDGPKLVKDQGAETLDKA
Ga0068855_1025588901	3300005563	Corn Rhizosphere	MAELKRIEEEAPTAELANAAFPAKEPEGPRLVKGQEPDNL
Ga0068856_1008503772	3300005614	Corn Rhizosphere	MAELKRIEEEAPTAELANAAFPAKEPEGPRLVKGQEPDNLDKAAAISKPMPLFF*
Ga0070764_106887982	3300005712	Soil	MAELKRIEEELPTAKLASDGIPPKQPDGPKLVKGQ
Ga0080026_101789241	3300005952	Permafrost Soil	MAELKRIEEELPSSELASDDIPAKQPEGPKLVKSQEPET
Ga0066790_102782692	3300005995	Soil	MAELKRIEEELPTSALASDDIPAKRPEGPKLVKSQEPETLDKAVAASEP
Ga0075023_1000275871	3300006041	Watersheds	VRIEEEFPTAEVPRDGNPSMQTEGLKVVKGREPEVLDRGDAVSEPMALFS
Ga0079037_1009730511	3300006224	Freshwater Wetlands	MMAELLTKEGELTTADLASSQVAEKQPDGPGLVEGPRPEKPALAAAVSEP
Ga0097621_1007136493	3300006237	Miscanthus Rhizosphere	MAELTRKEEVLATAELASYGIVQGQPDGPKLVKSQEPQDLGRPAAVSAHAIIF*
Ga0075520_14257342	3300006795	Arctic Peat Soil	MAELKRKEGELTTAELAGYGVEQKLPDGPKLVKVQETETLDRAAVVSK
Ga0116222_11709503	3300009521	Peatlands Soil	MAELKRIEEELPTAELASYGIPAKQPEGPKLVKGQEPETLDKAAAVSKP
Ga0116221_11586581	3300009523	Peatlands Soil	MALLRTKEGELTTAELASYGIPEKQPEGPKLVKSPE
Ga0116221_11911891	3300009523	Peatlands Soil	MAERKRKKGKLTATDLASYGITPMQPDKPKLVKGQEPE
Ga0116103_11165112	3300009615	Peatland	MAELKRKEEELTTADLAGYGVAQKQPDGPKLVKGQE
Ga0116124_10728832	3300009634	Peatland	MAELKRKEGELTTAELASYGVPQKQPDGPKLVKGQEPETLDKAAAVSKPI
Ga0134128_100614155	3300010373	Terrestrial Soil	MAELKRIEEEAPTAELANAAFPAKEPEGPRLVKGQEPDNLDKAAAISEPMPLFF*
Ga0136449_1000303104	3300010379	Peatlands Soil	MAERKKKKGKLTAADLAIYGITPKQPDGPKLVKQEPETLDGAAAASAPMP*
Ga0136449_1017284172	3300010379	Peatlands Soil	MAERKRKKGKLTATDLASYGITPMQPDKPELVKGQEPETLDKAAAVSEPMP*
Ga0134126_109233021	3300010396	Terrestrial Soil	MAELKRKEGELTTAELASYGVAQKQPDGPKLVKGPR
Ga0138573_12888001	3300011089	Peatlands Soil	MAELLKTKEEEFTTADLASHGVAKKQPDGPKLVKGQEPETLDKAAAVSKP
Ga0164306_114893072	3300012988	Soil	MAELKRIAEEVPSSELASAAFPAREPEGPKLVKGPE
Ga0157369_101916124	3300013105	Corn Rhizosphere	MAELKRIAEEVPSSELASAAFPAREPEGPKLVKGPEPETLDKAT
Ga0157374_106629611	3300013296	Miscanthus Rhizosphere	MAELKRIDEGVPTAELASVAFPAKEPEGPKLVKAPQPETLDKGAAVS
Ga0157374_124496603	3300013296	Miscanthus Rhizosphere	VMAELLKTKEEAFTTADLATHGVAKKQPDGPKLVKGQEPETLG*
Ga0157378_109773263	3300013297	Miscanthus Rhizosphere	MAELQRIEDELPSSALASDDIPAKQPEGPKLVKGQEPKPLNGAAA
Ga0163162_125460122	3300013306	Switchgrass Rhizosphere	MAELKRIEEEVPSSELASAAFPAKEPEGPKLVKGPEPETLDKAT
Ga0182018_100135853	3300014489	Palsa	MAELKRIEEEFPTAELARDGNPPKQPEGPKLVKGQEPGTPNRSTAVSEPVPLVF*
Ga0182018_101140723	3300014489	Palsa	MAELRRIDEGFPTAGLATYGIPPKQPEGPKLVKGQE
Ga0182024_100463951	3300014501	Permafrost	MAELKRIEEEFPTPEPARDGNPSKQPEGPKLVKGQEPGTLDR
Ga0182021_121014912	3300014502	Fen	MAELKRKEGELTTAELAGYGVEQKLPDGPKLVKGVEPETLDKAAAVSK
Ga0182027_118146592	3300014839	Fen	MAELKRKEGELTTAELAGYGVEQKLPDGPKLVKGVEPETLDKAAAVS
Ga0187818_100386142	3300017823	Freshwater Sediment	MAERKKKNGRLTAADLASYGITPKQPDKAKLVKAREPETLDKAVAVSEPHALVF
Ga0187818_101989081	3300017823	Freshwater Sediment	MAERKKKKGKLTAVDLASYAITPKQPEGPKLVKRQEPETLDRAAAVTGPMP
Ga0187849_12275151	3300017929	Peatland	MAELKRKEEELTTADLAGYGVAQKQPDGPKLVKGQEPKTLDRAAA
Ga0187801_104544041	3300017933	Freshwater Sediment	VMAERKKKKGRLTAADLASYGITPKQPDKAKLVKAREPETLDKAVAVSEPHALVF
Ga0187848_104474982	3300017935	Peatland	MAELKRKEGELTTAELAGYGVAQRQPDGPKLVKGQEPETLDKAAAVS
Ga0187850_102129101	3300017941	Peatland	MAELKRKQGELTTADLAGYGVAQKQPDGPKLVKGQEPKTLDRAAAVSEPMP
Ga0187808_101736072	3300017942	Freshwater Sediment	MAERKKKKGRLTAADLASYGITPKQPDKAKLVKAREPETLDKAVAVSEPHALVF
Ga0187819_103948751	3300017943	Freshwater Sediment	MAELKTREGELTTAELASYGIEQKQPDGPKLVKDKRAGNSG
Ga0187815_100284654	3300018001	Freshwater Sediment	MAERKKKKGKLTAADLASYGITPKQPDKPKLVKGLVKGQESETLDKAAAVSEPMP
Ga0187805_103768621	3300018007	Freshwater Sediment	MAEMLKTEGSELTTADLASYGITPKQPDGPKRVKGQEPDTLH
Ga0187860_12111413	3300018014	Peatland	VAELKRNEGELTTADLASYGVAQKQPEGPKLVKGQEPETLD
Ga0187880_12107413	3300018016	Peatland	MAELLRTKEKEEELTTADLASYGIAQKQPDVPKLVKGQ
Ga0187872_102774221	3300018017	Peatland	MAELKRKEGELTTAELSSYGVAQKQPDGPKLVKGQEPETLDK
Ga0187869_101205581	3300018030	Peatland	MAELKRKQGELTTADLAGYGVAQKQPDGPKLVKGQEPKTLDRAAA
Ga0187858_109354292	3300018057	Peatland	VAELKRNEGELTTADLASYGVAQKQPEGPKLVKGQEP
Ga0184643_14319382	3300019255	Groundwater Sediment	MAELKRVEEEFPKAELARDGNLSRQPEGPKLVKGQEPETLDKAVAASEQM
Ga0193751_12004791	3300019888	Soil	MAELKTIEEELPSSELASDDIPAKQPEGPKLVKGQEPETLDKAGAASEPM
Ga0193728_13685422	3300019890	Soil	MAELKRIEEEFPTAGLPRDGDPSKQPEGPKLVKGQEPETLGRG
Ga0180118_13430122	3300020063	Groundwater Sediment	MAELKRKEGELTTADLASYGIPPKQPDGPKLVKGQETETLDRAAAVSE
Ga0210401_101542174	3300020583	Soil	MAESKIKEGELTTAELASYGIPPKQPDGPKLVKGQEPDTLDGADAVSEPTS
Ga0210396_104898901	3300021180	Soil	MAELKRKEDELTSAELASYGVAPKQPDGPKLVKTDEPETLD
Ga0210388_102703721	3300021181	Soil	MAELLKTKEAELTTADLASYGITQEHPDGPNLVKGQEPETLD
Ga0213882_102521001	3300021362	Exposed Rock	MAELKRKEEDLTTADLAGRGQEQKDVRHDAGPKLVPGSRPG
Ga0210393_116686202	3300021401	Soil	MTELKRIEEEMSTAELASYGIPAKQPDRPKLVKSQEPETL
Ga0210383_102785252	3300021407	Soil	MAEVKRIAEEMSTAELASYGIPAKQPEGPKLVKGQEPETLDRVATI
Ga0210394_103464293	3300021420	Soil	MAELLKTKEEELTTADFASYGITQKQTDGPKLVKVQETETLD
Ga0210391_100323631	3300021433	Soil	MAELKRIEEEYPTAELARDSNSPKQPEGPKLVKGQEPGTPDRSTAVS
Ga0210391_111647092	3300021433	Soil	MAELKRKEEELTATDLASYGIPEKQPDGPKLVTGQGSETLDRAPA
Ga0210410_103931391	3300021479	Soil	MAEVKAREGELTTADLASHGIRPRQLDGPKLVKGEAETLDR
Ga0224555_11320881	3300023088	Soil	MAELKRKEEELTTADLASYGIPAKQPEGPKLVKGQEPETLD
Ga0224572_11127951	3300024225	Rhizosphere	MAELKRIEEEFPTAEVASEGNPPKQFEGPTLVKGQESETLDR
Ga0208456_10248851	3300025441	Peatland	MAELKRKQGELTTADLAGYGVAQKQPDGPKLVKGQEPKTLD
Ga0208038_10241404	3300025446	Peatland	MAELKRKEGELTTADLAGYGVAQKQPDGPKLVKGQEPKTLDRAAAV
Ga0208562_10410432	3300025460	Peatland	MAEPKRKEEELTTADLASTDISPKQPEGPKLVKVQEP
Ga0208715_10478271	3300025482	Arctic Peat Soil	MAELKRIEEELPSSELASDDMPARQPEGPKLVKGQEAETLDRGAAISKPMALFSE
Ga0208191_10780062	3300025496	Peatland	MAELKRKEGELTTADLAGYGVAQKQPDASKLVKGQE
Ga0208563_10384552	3300025501	Peatland	MAEPKRKEEELTTADLASTDISPKQPEGPKLVKVQEPATLDKVAAVSE
Ga0208080_10254801	3300025553	Arctic Peat Soil	MAEVKKKEEELTTADLASYGIPPKQTEGLKLVKGQEPETLDRVAAVSE
Ga0209385_10035421	3300025650	Arctic Peat Soil	ELKTNEGELTTADLASHGIAQEQPKGPKLVKGQEPEAL
Ga0209176_102036191	3300025854	Arctic Peat Soil	MNELMTKEGELTTADLASHGSAPKQPDGPKLGKGQEPE
Ga0207687_108275362	3300025927	Miscanthus Rhizosphere	MAEPKRIEEELPTSELASDDILAKQPEGPKLVKGQEPKTQDGATTVSEPMP
Ga0207644_106089121	3300025931	Switchgrass Rhizosphere	MAELKTKEEKLATADTASYDIPPEQSEGPKLVKGQRPETLERTAPI
Ga0207689_110906922	3300025942	Miscanthus Rhizosphere	MAEPKRIEEELPTSELASDDIPAKQPEGPKLVKGQEPKTQDGAT
Ga0207640_111033711	3300025981	Corn Rhizosphere	MAELQRMEEELPSSALASDDIPAKQPEGPKLVKGQEPKPLNGAA
Ga0207702_103827883	3300026078	Corn Rhizosphere	MAELKRIEEEAPTAELANAAFPAKEPEGPRLVKGQEPDNLDKAAAISKPMPLFF
Ga0208199_10870562	3300027497	Peatlands Soil	MAERKRKKGKLTATDLASYGITPMQPDKPKLVKGQEPETLDKAAAVSEPMP
Ga0209420_10965001	3300027648	Forest Soil	MAELKRIEEEFPTPEPARDGNPSKQPEGPKLVKGQEPDT
Ga0209333_12030021	3300027676	Forest Soil	KSWVMAELKRIDEEFPAAELATDSIPPKQPEGPKLVKG
Ga0209908_100003017	3300027745	Thawing Permafrost	MAELKRIEEEFPTAELARDGNPPKQPEGPKLVKGQEPGTPNRSTAVSEPVPLVF
Ga0209448_100578451	3300027783	Bog Forest Soil	MAERKRKKGKLTAADLASYGITPMQPDKPELVKGQEPETLDKAAAVSEPMP
Ga0209624_103985541	3300027895	Forest Soil	MAKLKRIEEEFPTAQLAGDSNPPKQPEGPRLVKGQEQGTPDRGTAVSEPMPLSSE
Ga0209415_101215714	3300027905	Peatlands Soil	MAERKKKKGKLTAADLAIYGITPKQPDGPKLVKQEPETLDGAAAASAPMP
Ga0209006_114794071	3300027908	Forest Soil	MAELLKTKEEELTTADLANYGILQKEPGGPKLVKGQETDAL
Ga0209069_109500041	3300027915	Watersheds	MAEPRAIEVGLPTAELASDVIPPKQPDGPKLVKGQE
Ga0302303_103105533	3300028776	Palsa	MAELKRIEEEFPTAEPARDRNPSKQPEGPKLVKGQEPETLGRGAAV
Ga0265338_100315331	3300028800	Rhizosphere	MAELKRKEGELTTAELASYGVPPKQPEGPKLVKGQEPETLDKAAGVSRPM
Ga0222749_100231826	3300029636	Soil	MAELKRKEDELTSAELASYGVAPKQPDGPKLVKTDEPETLDRAVAVSE
Ga0311369_113605013	3300029910	Palsa	MAELKRIEEEFPTAEPARDRNPSKQPEGPKLVKGQEPETLGRGAAVSEP
Ga0265753_10506201	3300030862	Soil	MAELKRIEEEFPTAELVRDGNPPKQPEGPKLVKGQEPETLGR
Ga0265765_10623671	3300030879	Soil	MAELKRIEEEFPTPEPARDGNPSKQPEGPKLVKGQEL
Ga0265776_1010343	3300030880	Soil	MAELKRKEEDLSTAELASYGIPQKQPDGPKLVTGQGPETLDRAPA
Ga0302326_116812961	3300031525	Palsa	MAELKRIEEEFPMAELAGDSNSPRQPEGPKLVKDQEPGTPDSRTAVSGPLPLFSEPEMG
Ga0265342_103091293	3300031712	Rhizosphere	MAEPKRKEGELTTADLASYGVPPKQPEKPKLVKAPEPETLGQAP
Ga0311301_119343172	3300032160	Peatlands Soil	KRERGGVMAELKIRGGDFTMADLASSGVAQKQPDGPQMVKG
Ga0307471_1027511792	3300032180	Hardwood Forest Soil	MAESKIKEGELTTAELASYGIPPKQPDGPKLVKGQEPDTLDRADAVSEPTS
Ga0326728_103374261	3300033402	Peat Soil	MAELKRKEGELTTADLASSGVAQKQPEGPKLVKGQ
Ga0326727_106861291	3300033405	Peat Soil	MAELRREEVELTTADLASPGVAQKQPDGPKLVKGPEPETPHTSAAVSA
Ga0326726_101447355	3300033433	Peat Soil	MAELKTKEGELTPAELAGYGIPPEQTDGPQLVKAPEPETPDK
Ga0316624_110835632	3300033486	Soil	MAELKTKEGELTTADLAKYGIPPKQPDGPKLVKGQEPETLDRA
Ga0316214_10072931	3300033545	Roots	MAELKRIEDEHPTAELARDSNSPKQPEGPKLVKDQEPGTPDRSTAVSGPLP

Hidden Markov Model


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