Metagenome / Metatranscriptome Family F089070

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F089070
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	94 residues
Representative Sequence	MERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	19.05 %
% of genes near scaffold ends (potentially truncated)	45.87 %
% of genes from short scaffolds (< 2000 bps)	79.82 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (68.807 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (11.009 % of family members)
Environment Ontology (ENVO)	Unclassified (43.119 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.890 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.10% β-sheet: 0.00% Coil/Unstructured: 80.90%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00692	dUTPase	39.45
PF13183	Fer4_8	22.02
PF02910	Succ_DH_flav_C	9.17
PF01058	Oxidored_q6	2.75
PF00329	Complex1_30kDa	1.83
PF00334	NDK	0.92
PF13085	Fer2_3	0.92
PF00346	Complex1_49kDa	0.92
PF01257	2Fe-2S_thioredx	0.92
PF06463	Mob_synth_C	0.92
PF00507	Oxidored_q4	0.92
PF12838	Fer4_7	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	39.45
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	39.45
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	2.75
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	2.75
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	2.75
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	2.75
COG0852	NADH:ubiquinone oxidoreductase 27 kD subunit (chain C)	Energy production and conversion [C]	1.83
COG3262	Ni,Fe-hydrogenase III component G	Energy production and conversion [C]	1.83
COG0105	Nucleoside diphosphate kinase	Nucleotide transport and metabolism [F]	0.92
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	0.92
COG0838	NADH:ubiquinone oxidoreductase subunit 3 (chain A)	Energy production and conversion [C]	0.92
COG1905	NADH:ubiquinone oxidoreductase 24 kD subunit (chain E)	Energy production and conversion [C]	0.92
COG2896	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	Coenzyme transport and metabolism [H]	0.92
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.81 %
Unclassified	root	N/A	31.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.81 %
Unclassified	root	N/A	31.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.81 %
Unclassified	root	N/A	31.19 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	33.03 %
Unclassified	root	N/A	31.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.75 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	33.03 %
Unclassified	root	N/A	31.19 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.34 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.19 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	26.61 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	7.34 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	5.50 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.19 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	26.61 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	7.34 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5.50 %
Thermomicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.19 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	24.77 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	7.34 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5.50 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples	2.75 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.19 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	13.76 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	7.34 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5.50 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	2.75 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1.83 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.19 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	13.76 %
Pseudomonas sp. OF001	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	7.34 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5.50 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	2.75 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1.83 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_111391255	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	1007	Open in IMG/M
3300003319\|soilL2_10033816	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1541	Open in IMG/M
3300003319\|soilL2_10114380	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1492	Open in IMG/M
3300003324\|soilH2_10191373	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300004114\|Ga0062593_100038817	All Organisms → cellular organisms → Bacteria	2826	Open in IMG/M
3300004156\|Ga0062589_100163436	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1549	Open in IMG/M
3300004156\|Ga0062589_100897279	Not Available	816	Open in IMG/M
3300004157\|Ga0062590_100104769	All Organisms → cellular organisms → Bacteria	1804	Open in IMG/M
3300004479\|Ga0062595_100881613	Not Available	751	Open in IMG/M
3300004480\|Ga0062592_100082969	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300005093\|Ga0062594_102812804	Not Available	541	Open in IMG/M
3300005329\|Ga0070683_102339403	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300005330\|Ga0070690_101692242	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	514	Open in IMG/M
3300005331\|Ga0070670_100018576	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5959	Open in IMG/M
3300005331\|Ga0070670_101938464	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300005336\|Ga0070680_101894371	Not Available	517	Open in IMG/M
3300005337\|Ga0070682_101368982	Not Available	604	Open in IMG/M
3300005340\|Ga0070689_100038137	All Organisms → cellular organisms → Bacteria	3675	Open in IMG/M
3300005340\|Ga0070689_100367582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	1210	Open in IMG/M
3300005340\|Ga0070689_101518669	Not Available	607	Open in IMG/M
3300005344\|Ga0070661_100175322	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1629	Open in IMG/M
3300005345\|Ga0070692_10074773	All Organisms → cellular organisms → Bacteria	1813	Open in IMG/M
3300005355\|Ga0070671_100578314	Not Available	970	Open in IMG/M
3300005355\|Ga0070671_101151228	Not Available	682	Open in IMG/M
3300005356\|Ga0070674_100112736	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1999	Open in IMG/M
3300005365\|Ga0070688_100310906	Not Available	1142	Open in IMG/M
3300005366\|Ga0070659_101168821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	680	Open in IMG/M
3300005441\|Ga0070700_100208454	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1377	Open in IMG/M
3300005459\|Ga0068867_100340868	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300005530\|Ga0070679_100029835	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5381	Open in IMG/M
3300005535\|Ga0070684_100397865	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1270	Open in IMG/M
3300005543\|Ga0070672_100243895	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1512	Open in IMG/M
3300005547\|Ga0070693_100572961	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300005548\|Ga0070665_102372076	Not Available	533	Open in IMG/M
3300005549\|Ga0070704_100682057	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	910	Open in IMG/M
3300005563\|Ga0068855_102395239	Not Available	527	Open in IMG/M
3300005564\|Ga0070664_100655771	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300005578\|Ga0068854_102176955	Not Available	513	Open in IMG/M
3300005618\|Ga0068864_100070937	All Organisms → cellular organisms → Bacteria	3032	Open in IMG/M
3300006049\|Ga0075417_10723181	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300006237\|Ga0097621_101511856	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300006854\|Ga0075425_100624469	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300006954\|Ga0079219_10789527	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	743	Open in IMG/M
3300009094\|Ga0111539_10044381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5326	Open in IMG/M
3300009176\|Ga0105242_11271575	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300010373\|Ga0134128_13123010	Not Available	509	Open in IMG/M
3300010397\|Ga0134124_10336555	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1418	Open in IMG/M
3300012212\|Ga0150985_101563014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	1042	Open in IMG/M
3300012212\|Ga0150985_121430936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	1007	Open in IMG/M
3300012469\|Ga0150984_100426701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	905	Open in IMG/M
3300012512\|Ga0157327_1007018	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	969	Open in IMG/M
3300012519\|Ga0157352_1031371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	707	Open in IMG/M
3300013297\|Ga0157378_11172176	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300013307\|Ga0157372_12254935	Not Available	625	Open in IMG/M
3300014325\|Ga0163163_10041197	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4515	Open in IMG/M
3300015262\|Ga0182007_10067197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1174	Open in IMG/M
3300015262\|Ga0182007_10206062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	689	Open in IMG/M
3300015371\|Ga0132258_10386272	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3474	Open in IMG/M
3300015372\|Ga0132256_100084216	All Organisms → cellular organisms → Bacteria	3052	Open in IMG/M
3300015373\|Ga0132257_100526593	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1453	Open in IMG/M
3300015374\|Ga0132255_100098886	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3957	Open in IMG/M
3300015374\|Ga0132255_100607614	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300021445\|Ga0182009_10280114	Not Available	835	Open in IMG/M
3300022467\|Ga0224712_10409358	Not Available	647	Open in IMG/M
3300022880\|Ga0247792_1051324	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	771	Open in IMG/M
3300022883\|Ga0247786_1096293	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300023077\|Ga0247802_1033838	Not Available	765	Open in IMG/M
3300025321\|Ga0207656_10085583	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1423	Open in IMG/M
3300025903\|Ga0207680_10070784	All Organisms → cellular organisms → Bacteria	2160	Open in IMG/M
3300025909\|Ga0207705_10189392	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300025912\|Ga0207707_10008278	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	9024	Open in IMG/M
3300025920\|Ga0207649_10507177	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300025925\|Ga0207650_10335234	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1241	Open in IMG/M
3300025926\|Ga0207659_10629653	Not Available	916	Open in IMG/M
3300025931\|Ga0207644_10558872	Not Available	948	Open in IMG/M
3300025931\|Ga0207644_10631784	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300025936\|Ga0207670_10453673	Not Available	1034	Open in IMG/M
3300025937\|Ga0207669_10067575	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2228	Open in IMG/M
3300025944\|Ga0207661_11474864	Not Available	624	Open in IMG/M
3300025945\|Ga0207679_10202664	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1658	Open in IMG/M
3300025981\|Ga0207640_11995957	Not Available	525	Open in IMG/M
3300026023\|Ga0207677_10009485	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5478	Open in IMG/M
3300026088\|Ga0207641_11490812	Not Available	678	Open in IMG/M
3300026095\|Ga0207676_10464257	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1196	Open in IMG/M
3300027909\|Ga0209382_10007174	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	14248	Open in IMG/M
3300028379\|Ga0268266_10789024	Not Available	917	Open in IMG/M
3300028379\|Ga0268266_12361481	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300028381\|Ga0268264_10609680	Not Available	1076	Open in IMG/M
3300031538\|Ga0310888_10021767	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2700	Open in IMG/M
3300031716\|Ga0310813_10759220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	870	Open in IMG/M
3300031854\|Ga0310904_10264172	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1073	Open in IMG/M
3300031908\|Ga0310900_10654945	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300031913\|Ga0310891_10278516	Not Available	584	Open in IMG/M
3300031938\|Ga0308175_100026344	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4733	Open in IMG/M
3300031938\|Ga0308175_101396648	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300031944\|Ga0310884_10709139	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300032012\|Ga0310902_10127485	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1407	Open in IMG/M
3300032013\|Ga0310906_11194032	Not Available	553	Open in IMG/M
3300032074\|Ga0308173_12139742	Not Available	528	Open in IMG/M
3300032075\|Ga0310890_10656691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	817	Open in IMG/M
3300032179\|Ga0310889_10161801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. OF001	1010	Open in IMG/M
3300032421\|Ga0310812_10155654	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	974	Open in IMG/M
3300033412\|Ga0310810_10007197	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	12670	Open in IMG/M
3300033475\|Ga0310811_11496602	Not Available	502	Open in IMG/M
3300034820\|Ga0373959_0228462	Not Available	501	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.46%
Environmental	Environmental	49.54%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.46%
Terrestrial	Environmental → Terrestrial	49.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.43%
Roots	Host-Associated → Plants → Roots	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	22.94%
Loam	Environmental → Terrestrial → Soil → Loam	15.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.42%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	22.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	12.84%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.01%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.42%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.01%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.42%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.42%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.75%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1113912552	3300000956	Soil	MARLLHDWTTMERKPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDADRLPVGLTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
soilL2_100338163	3300003319	Sugarcane Root And Bulk Soil	MQKPTETNPPSSVNPAPDRDDQAYLGGGDAVEKTTYVSDVHGAGVNDAEGATVGLTATVRHSGGLGALGWILLVLVVLVVVAYAAGLFT*
soilL2_101143803	3300003319	Sugarcane Root And Bulk Soil	MERPKETNPPSAVNRLPDEDAESSLGGADAVEKTTSLSDVHGAGVNDAEQWPVGLTANVPHRASPGPIVWILIVLVALVLVAYAAGLFT*
soilH2_101913733	3300003324	Sugarcane Root And Bulk Soil	MEKPRETNPPSAVNPTPDRASKPYIGGADSVEKTSALGDVHGAEVNDAEVAPVGLTATVRHRGGLGVLGWVVLLLVVLVIIAYAAGMFS*
Ga0062593_1000388171	3300004114	Soil	MERNPDTNPPSGVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT*
Ga0062589_1001634362	3300004156	Soil	MERNPDTNPPSGVNPTPNRKTAPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT*
Ga0062589_1008972792	3300004156	Soil	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0062590_1001047693	3300004157	Soil	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSGVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0062595_1008816132	3300004479	Soil	PTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0062592_1000829692	3300004480	Soil	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0062594_1028128042	3300005093	Soil	MERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0065712_103794811	3300005290	Miscanthus Rhizosphere	EPYLGGADAVEKTSTLGDVHGADVSDADRRPVGFTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070683_1023394031	3300005329	Corn Rhizosphere	FQGDRGRARRVESGGWFRLTAAAPCTAPVMARLLHDWTTMERKPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVSDADRRPVGFTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070690_1016922422	3300005330	Switchgrass Rhizosphere	MERNPDTNPPSGVNATPNRKTAPYLGGADAVEKTSTLGDVHGADVNDAEHAPVRLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT*
Ga0070670_1000185763	3300005331	Switchgrass Rhizosphere	MERKPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVNDADRRPVGFTATVPHRAGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070670_1019384641	3300005331	Switchgrass Rhizosphere	MERNPDTNPPSGVNATPNRKTAPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT*
Ga0070680_1018943712	3300005336	Corn Rhizosphere	LVQGERAAEGWARVMARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0070682_1013689821	3300005337	Corn Rhizosphere	PLVQGERAAEGWARVMARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0070689_1000381375	3300005340	Switchgrass Rhizosphere	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0070689_1003675822	3300005340	Switchgrass Rhizosphere	PTRAAGDGAVAARPRAMERLPETNPPSAVNPTPDRQTEPYLGGADAVEKTSTLGDVHGAGVNDAAQAPVGLTATVPHRGGLGAIGWMLLALAVLVAVAYATGLFT*
Ga0070689_1015186692	3300005340	Switchgrass Rhizosphere	MARLLHDWTTMERNPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVNDADRLPVGLTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070661_1001753222	3300005344	Corn Rhizosphere	MARLLHDWTTMERKPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVSDADRRPVGFTATVPHRAGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070692_100747731	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MERLPETNPPSAVNPTPDRQTEPYLGGADAVEKTSTLGDVHGAGVNDAAQAPVGLTATVPHRGGLGAIGWMLLALAVLVAVAY
Ga0070668_1000233385	3300005347	Switchgrass Rhizosphere	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSGVNEPTDRSVETTATVPHTGGLGAIG
Ga0070671_1005783142	3300005355	Switchgrass Rhizosphere	MQRPPDTNPPSAVNPTPNRNTEPYLGGADAVEKTSTLGDVHGSDVNDDAHVPVGLTATVPHRGGLGAIGWILLVLAILVAV
Ga0070671_1011512282	3300005355	Switchgrass Rhizosphere	MARLLHDWTTMERNPDTNPPSAVNRTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDTDRLPVGLTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070674_1001127364	3300005356	Miscanthus Rhizosphere	GDGAVAARRRLMQRPPDTNPPSAVNPTPNRNTERYLGGADAVEKTSTLGDVHGSDVNDEAQGPVGLTATVPHRGGLGAIGWILLVLAILVAVAYATGLFT*
Ga0070688_1003109061	3300005365	Switchgrass Rhizosphere	MERLPETNPPSAVNPTPDRQTEPYLGAADAVEKTSTLGDVHGAGVNDAAQAPVGLTATVPHRGGLGAIGWMLLALALLVAVAYATGLFT*
Ga0070659_1011688212	3300005366	Corn Rhizosphere	SLPTRAAGDGAVAARPGAMERLPETNPPSAVNPTPDRQTEPYLGGADAVEKTSTLGDVHGAGVNDAAQAPVGLTATVPHRGGLGAIGWMLLALAVLVAVAYATGLFT*
Ga0070700_1002084543	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	RVMARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0068867_1003408681	3300005459	Miscanthus Rhizosphere	MQRPPDTNPPSAVNPTPNRNTERYLGGADAVEKTSTLGDVHGSDVNDEAQGPVGLTATVPHRGGLGAIGWILLVLAILVAVA
Ga0070679_1000298358	3300005530	Corn Rhizosphere	PSGVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT*
Ga0070684_1003978652	3300005535	Corn Rhizosphere	MARLLHDWTTMERNPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVNDADRRPVGFTATVPHRAGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070672_1002438953	3300005543	Miscanthus Rhizosphere	MERLPETNPPSAVNPTPDRQTEPYLGGADAVEKTSTLGDVHGAGVNDAAQAPVGLTATVPHRGGLGAIGWMLLALAVLVAVAYATGLFT*
Ga0070693_1005729612	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILAAVAYTAGLFT*
Ga0070665_1023720762	3300005548	Switchgrass Rhizosphere	GGWFRLTAAAPYTAPVMARLLHDWTTMERNPDTNPPSAVNRTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDADRLPVGLTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070704_1006820572	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VNALPKVGRVMARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0068855_1023952392	3300005563	Corn Rhizosphere	WFGLTAAAPCTAPVMARLLHDWTTMERNPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVNDADRLPVGLTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
Ga0070664_1006557712	3300005564	Corn Rhizosphere	SHEPGLFQGDRGRARRVESGGWFRLTAAAPCTAPVMARLLHDWTTMERKPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVSDADRRPVGFTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
Ga0068854_1021769552	3300005578	Corn Rhizosphere	MARLLHDWTTMERNPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDADRLPVGLTATVPHRGGLGAIGWILLVL
Ga0068852_1004177971	3300005616	Corn Rhizosphere	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLG
Ga0068864_1000709372	3300005618	Switchgrass Rhizosphere	MARLLHDWTTMERKPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVSDADRRPVGFTATVRHRAGLGAIGWILLVLAILVAVGYASALFT*
Ga0075417_107231811	3300006049	Populus Rhizosphere	MQWPPDTNPPSAVNRTPNRNAQPNLGGADAVEKTSSLGDVHGAGVNEPAQAPVEVAATVPHRAGLGPIGWIVIVLAALVLAAYAAGLFT*
Ga0097621_1015118562	3300006237	Miscanthus Rhizosphere	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLF
Ga0075425_1006244692	3300006854	Populus Rhizosphere	MQWPPDTNPPSAVNRTPNRNAQPNLGGADAVEKTSSLGDVHGAGVNEPAQAPVEVAATVPHRAGVGPIGWIVIVLAALVLAAYAAGLFT*
Ga0079219_107895272	3300006954	Agricultural Soil	MEKPRETNPPSAVNPTPDRASTPYIGGADSVEKTSTLSDVHGAEVNDAEVAPVGLTATVRHRGGLGVLGWVVLVLVALVVIAYAAGLFT*
Ga0111539_100443813	3300009094	Populus Rhizosphere	VARLLHDHRGMQWPPDTNPPSAVNRTPNRNAQPNLGGADAVEKTSSLGDVHGAGVNEPAQAPVEVAATVPHRAGLGPIGWIVIVLAALVLAAYAAGLFT*
Ga0105242_112715752	3300009176	Miscanthus Rhizosphere	MQRPPDTNPPSAVNPTPSRNTEPYLGGADAVEKTSTLGDVHGSDVNDEAQGPVGLTATVPHRGGLGAIGWILLVLAILVAVAYATGLFT*
Ga0134128_131230102	3300010373	Terrestrial Soil	STHGAGDGAVGARPATMERNPDTNPPSGVNPTPNRKTAPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT*
Ga0134124_103365552	3300010397	Terrestrial Soil	MERPPDTSPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0150985_1015630143	3300012212	Avena Fatua Rhizosphere	ETNPPSAVNPTPNRNAEPYLGGADAVEKTSTLGDVHGSDVNDDAQRPVGLTATVPHRAGLGAIGWILLVLAVLVAVAYATGLFT*
Ga0150985_1214309362	3300012212	Avena Fatua Rhizosphere	CTTMERTPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDAERAPVGLTATVPHRGGLGAIGWILLLLAILVAAGYATGLFT*
Ga0150984_1004267011	3300012469	Avena Fatua Rhizosphere	PDTNPPSAVNPTPNRNAEPDLGGADAVEKTSTLGDVHGSDVNDDAQRPVGLTATVPHRAGLGAIGWILLVLAVLVAVAYATGLFT*
Ga0157327_10070182	3300012512	Arabidopsis Rhizosphere	MARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0157352_10313711	3300012519	Unplanted Soil	KPLVQGERAAEGWARVMARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0157378_111721761	3300013297	Miscanthus Rhizosphere	QRPPDTNPPSAVNPTPNRNTERYLGGADAVEKTSTLGDVHGSDVNDEAQGPVGLTATVPHRGGLGAIGWILLVLAILVAVAYATGLFT*
Ga0157372_122549351	3300013307	Corn Rhizosphere	PNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT*
Ga0163163_100411975	3300014325	Switchgrass Rhizosphere	MARLLHDWTTMERKPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDADRRPVGFTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT*
Ga0182007_100671971	3300015262	Rhizosphere	VMEKPRETNPPSSVNPTPDRASTPYLGGADSVEKTGYLADVHGAEVNDAEGAPVGLTAAVPHRGGLGLLGWVVLVVVVLVIVAYAAGLFT*
Ga0182007_102060621	3300015262	Rhizosphere	NPTPNRKTAPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT*
Ga0132258_103862723	3300015371	Arabidopsis Rhizosphere	MERTPGTNPPSAVNRTPNRNTEPYLGGADAVEKTSDLGDVHGADVNEPSQTPVEIAASVPHARGLGWIGWIVLVLAVLVLAAYAAGLFT*
Ga0132256_1000842163	3300015372	Arabidopsis Rhizosphere	MARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAAAYTAGLFT*
Ga0132257_1005265932	3300015373	Arabidopsis Rhizosphere	MERTPDTNPPSAVNRTPNRNTEPYLGGADAVEKTSDLGDVHGADVNEPSQTPVEIAASVPHARGLGPIGWIVLVLAVLVLAAYAAGLLT*
Ga0132255_1000988863	3300015374	Arabidopsis Rhizosphere	MARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDGAVETTATVSHTGGLGAIGWILLVLAILIAVAYTAGLFT*
Ga0132255_1006076143	3300015374	Arabidopsis Rhizosphere	MERTPDTNPPSAVNRTPNRNTEPYLGGADAVEKTSDLGDVHGADVNEPSQTPVEIAASVPHARGLGWIGWIVLVLAVLVLAAYAAGLFT*
Ga0182009_102801141	3300021445	Soil	MARLLHDWTTMERKPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVNDADRRPVGFTATVPHRAGLGAIGWILLVLAILVAVGYASGLFT
Ga0224712_104093581	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MERNPDTNPPSGVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT
Ga0247792_10513242	3300022880	Soil	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0247786_10962931	3300022883	Soil	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVPHTGGLGAIGWILLVL
Ga0247802_10338382	3300023077	Soil	NRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0207656_100855832	3300025321	Corn Rhizosphere	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0207680_100707843	3300025903	Switchgrass Rhizosphere	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSGVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0207705_101893923	3300025909	Corn Rhizosphere	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0207707_1000827811	3300025912	Corn Rhizosphere	MERNPDTNPPSGVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHPGGLGAIGWIVLLLAILVAVGYATGLFT
Ga0207649_105071772	3300025920	Corn Rhizosphere	RLTAAAPCTAPVMARLLHDWTTMERKPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVSDADRRPVGFTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT
Ga0207650_103352342	3300025925	Switchgrass Rhizosphere	MERNPDTNPPSGVNATPNRKTAPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT
Ga0207659_106296531	3300025926	Miscanthus Rhizosphere	MERNPDTNPPSGVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLL
Ga0207644_105588722	3300025931	Switchgrass Rhizosphere	MARLLHDWTTMERNPDTNPPSAVNRTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDTDRLPVGLTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT
Ga0207644_106317841	3300025931	Switchgrass Rhizosphere	MQRPPDTNPPSAVNPTPNRNTEPYLGGADAVEKTSTLGDVHGSDVNDDAHVPVGLTATVPHRGGLGAIGWILLVLAILVAVAYATGLFT
Ga0207670_104536731	3300025936	Switchgrass Rhizosphere	GWARVMARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0207669_100675752	3300025937	Miscanthus Rhizosphere	MQRPPDTNPPSAVNPTPNRNTERYLGGADAVEKTSTLGDVHGSDVNDEAQGPVGLTATVPHRGGLGAIGWILLVLAILVAVAYATGLFT
Ga0207661_114748642	3300025944	Corn Rhizosphere	FQGDRGRARRVESGGWFRLTAAAPCTAPVMARLLHDWTTMERKPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVSDADRRPVGFTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT
Ga0207679_102026642	3300025945	Corn Rhizosphere	MARLLHDWTTMERKPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVSDADRRPVGFTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT
Ga0207640_119959571	3300025981	Corn Rhizosphere	MARLLHDWTTMERNPDTNPPSAVNPTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDADRLPVGLTATVPHRGGLGAIGWILLVLAIL
Ga0207677_100094853	3300026023	Miscanthus Rhizosphere	MARLLHVPVAMERPPDTNPPSAVNPAPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0207641_114908122	3300026088	Switchgrass Rhizosphere	MERNPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVNDADRRPVGFTATVPHRAGLGAIGWILLVLAILVAVGYASGLFT
Ga0207676_104642572	3300026095	Switchgrass Rhizosphere	MARLLHDWTTMERKPDTNPPSAVNPTPNRKAEPYLGGADAVEKTSTLGDVHGADVNDADRRPVGFTATVPHRAGLGAIGWILLVLAILVAVGYASALFT
Ga0209382_100071749	3300027909	Populus Rhizosphere	MQWPPDTNPPSAVNRTPNRNAQPNLGGADAVEKTSSLGDVHGAGVNEPAQAPVEVAATVPHRAGLGPIGWIVIVLAALVLAAYAAGLFT
Ga0268266_107890242	3300028379	Switchgrass Rhizosphere	WARVMARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0268266_123614811	3300028379	Switchgrass Rhizosphere	TTMERNPDTNPPSAVNRTPNRKTEPYLGGADAVEKTSTLGDVHGADVNDADRLPVGLTATVPHRGGLGAIGWILLVLAILVAVGYASGLFT
Ga0268264_106096802	3300028381	Switchgrass Rhizosphere	GWARVMARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVPHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0310888_100217672	3300031538	Soil	MARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0310813_105114851	3300031716	Soil	MARLLHVPVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRSVETTATVPHTGGLGAIG
Ga0310813_107592202	3300031716	Soil	ETNPPSAVNPTPDRQTEPYLGGADAVEKTSTLGDVHGAGVNDAAQAPVGLTATVPHRGGLGAIGWMLLALAVLVAVAYATGLFT
Ga0310904_102641722	3300031854	Soil	MARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKASTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0310900_106549451	3300031908	Soil	ARLLHVSVAMERPTDTNPPSAVNPTPNRKTEPYLGGADAVDKASTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0310891_102785162	3300031913	Soil	RLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0308175_1000263444	3300031938	Soil	MERNPDTNPPSAVNPTPNRNTEPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWILLLLAILVAVGYATGLFT
Ga0308175_1013966482	3300031938	Soil	MEKPRETNPPSSVNPTPDRASTPYIGGADAVEKTSDVADVHGAEVNDAEVTPVSLTATVPHRGGLGLLGWIVLILVALVIV
Ga0310884_107091391	3300031944	Soil	ISRQRCGCARRRKPLVQGERAAEGWARVMARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKASTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0310902_101274853	3300032012	Soil	WARVMARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKASTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0310906_111940321	3300032013	Soil	NPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0308173_121397421	3300032074	Soil	LVHDCATMERNPDTNPPSAVNPTPNRNTEPYLGGADAVEKTSTLGDVHGADVNDAEHAPVGLTATVPHRGGLGAIGWIVLLLAIL
Ga0310890_106566911	3300032075	Soil	VNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0310889_101618011	3300032179	Soil	IISRQRCGCARRRKPLVQGERAAEGWARVMARLLHVSVAMERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKTSTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT
Ga0310812_101556542	3300032421	Soil	MERNPDTNPPSGVNPTPNRKTEPYLGGADAVEKTSTLGDVHGAEHAPVGLTATVPHRGGLGAIGWIVLLLAILVAVGYATGLFT
Ga0310810_100071979	3300033412	Soil	MERLPETNPPSAVNPTPDRQTEPYLGGADAVEKTSTLGDVHGAGVNDAAQAPVGLTATVPHRGGLGAIGWMLLALAVLVAVAYATGLFT
Ga0310811_114966022	3300033475	Soil	VNPTPDRQTEPYLGGADAVEKTSTLGDVHGAGVNDAAQAPVGLTATVPHRGGLGAIGWMLLALAVLVAVAYATGLFT
Ga0373959_0228462_232_501	3300034820	Rhizosphere Soil	MERPPDTNPPSAVNPTPNRKTEPYLGGADAVDKASTLGDVHGSDVNEPTDRAVETTATVSHTGGLGAIGWILLVLAILVAVAYTAGLFT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089070

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences