Metagenome Family F089066

Basic Information
Family ID	F089066
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	48 residues
Representative Sequence	TPQELAEKEQVLLALRLVSAKLNLAQRKTQGLPQPNIIRNQHKIG
Number of Associated Samples	95
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	8.26 %
% of genes from short scaffolds (< 2000 bps)	5.50 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Unclassified (91.743 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (31.193 % of family members)
Environment Ontology (ENVO)	Unclassified (45.872 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.716 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.32% β-sheet: 0.00% Coil/Unstructured: 50.68%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF14060	DUF4252	88.99
PF08281	Sigma70_r4_2	1.83
PF03972	MmgE_PrpD	0.92
PF00535	Glycos_transf_2	0.92
PF09969	DUF2203	0.92
PF00512	HisKA	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.92

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
All Organisms	root	All Organisms	8.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
cellular organisms	root	All Organisms → cellular organisms	8.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	8.26 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005559\|Ga0066700_10185499	All Organisms → cellular organisms → Bacteria → Acidobacteria	1430	Open in IMG/M
3300009137\|Ga0066709_101056950	All Organisms → cellular organisms → Bacteria → Acidobacteria	1191	Open in IMG/M
3300012040\|Ga0137461_1044740	All Organisms → cellular organisms → Bacteria → Acidobacteria	1193	Open in IMG/M
3300012208\|Ga0137376_10069907	All Organisms → cellular organisms → Bacteria → Acidobacteria	2919	Open in IMG/M
3300012210\|Ga0137378_10211880	All Organisms → cellular organisms → Bacteria → Acidobacteria	1804	Open in IMG/M
3300012922\|Ga0137394_10235308	All Organisms → cellular organisms → Bacteria → Acidobacteria	1565	Open in IMG/M
3300012923\|Ga0137359_10069337	All Organisms → cellular organisms → Bacteria → Acidobacteria	3082	Open in IMG/M
3300025936\|Ga0207670_10255720	All Organisms → cellular organisms → Bacteria → Acidobacteria	1355	Open in IMG/M
3300026317\|Ga0209154_1033124	All Organisms → cellular organisms → Bacteria → Acidobacteria	2364	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.82%
Host-Associated	Host-Associated	20.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.06%
Plants	Host-Associated → Plants	20.18%
Aquatic	Environmental → Aquatic	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.34%
Sediment	Environmental → Aquatic → Sediment	2.75%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.14%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	31.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.34%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.67%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015085	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4B, Ice margin, adjacent to proglacial lake)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1031114711	3300004114	Soil	VKRHETLAPRLTPEELAKREEVLVALRLVSAKLNLAQRKTVGVPQTTSPNIIRNQHKIG*
Ga0062591_1019466841	3300004643	Soil	KRPVNRREGPAPRLTPEELAEKEQVLVALRLVSAKLNLAQRKTVGVPQTTSPNIIRNQHKIG*
Ga0066672_109499721	3300005167	Soil	TPQELAEKEQVLLALRLVSAKLNLAQRKTQGLPQPNIIRNQHKIG*
Ga0066680_104972222	3300005174	Soil	LAEKEQVLVALRLLSAKLNLVQRKSQGLPQVNAIRNQHKMG*
Ga0066684_109724681	3300005179	Soil	PSVQIRQASLTPQELAEKEQVLVALRLLSAKLNLVQRKSQGLPQVNAIRNQHKMG*
Ga0066671_109170751	3300005184	Soil	NKSRDTAIRQSALTPQELAEKEQVLLALRLVSVKLNLAQRKTQGLPQLNIIRNQHKIG*
Ga0070690_1006116772	3300005330	Switchgrass Rhizosphere	ELAQKEQVLIALRLVSAKLNLAQRKTQGLPQVNPIRNHKIG*
Ga0066388_1031040223	3300005332	Tropical Forest Soil	EQELAEKDQVLIALRLVSAKLNLAQRKTQTIPQANTIRN*
Ga0070694_1006569142	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LTAEELAQKEQVIVALRLVSVILNLAQRKAQGLPQMNSIRNHKIG*
Ga0070696_1010349722	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	TQLLLTPDELAQKEQVLFALHMVSAKLNVVQRKSQGAPLPNTIRNQHKIG*
Ga0070704_1007438663	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	QPELTAEELAEKEQLLTALRLVSAKLNVAQRRTQGAPQVNTIRNQRKIG*
Ga0066700_101854991	3300005559	Soil	TPAELAEKKQLLTALRLVSVKLNVAQRKAQGMPALNTIHNQHRIG*
Ga0066670_103454301	3300005560	Soil	NKTHRHRIETAKPQLSPAEIAEKEQVLTALRLVSAKLNLAQRRTQSAPSLNLIHNQHKIG
Ga0066699_107064791	3300005561	Soil	ETARPQLSPEEIAEKEQVLTALRLVSAKLNLAQRRTQGAPSLNPIRNQHKIG*
Ga0066699_112510471	3300005561	Soil	SVIREPGLTAQELAQKEQVVLALRMVSAKLNVAQRRTQGVPQTNIIRNQHKIG*
Ga0066693_101497131	3300005566	Soil	LTPQELAEKEQVLLALRLVSVKLNLAQRKTQGLPQLNIIRNQHKIG*
Ga0066694_103258522	3300005574	Soil	TKTLPPRLTPQEQAEKEQVLIALRLVSAKLNLAQRKTQGLPPLNPIRNQHKIG*
Ga0068859_1024197892	3300005617	Switchgrass Rhizosphere	QELAQKEQVLIALRLVSAKLNLAQRKTQGLPQVNPIRNHKIG*
Ga0068864_1000937494	3300005618	Switchgrass Rhizosphere	QVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0068861_1018689181	3300005719	Switchgrass Rhizosphere	KRHETLAPRLTPEELAKKEEVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0097621_1017363141	3300006237	Miscanthus Rhizosphere	PVNKREVPAPRLTPEELAEREQVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG
Ga0066659_113491802	3300006797	Soil	KSRDTAIRPSTLTPQELAEKEQVLLALRLVSAKLNLAQRKTQGLPQLNIIRNQHKIG*
Ga0066660_106690982	3300006800	Soil	VIRQPQLTPEELAEKEQVLVALRLVSAKLNLAQRKAQGFPQLNTIRNQHKRG*
Ga0075428_1007448451	3300006844	Populus Rhizosphere	REEVLVALRLVSAKLNLAQRRTMGAPPTTSPNIIRNQHKIG*
Ga0075434_1009626243	3300006871	Populus Rhizosphere	RQPELTAEELAQKEQVVLALRMVSVKLNLAQRKTQGVSQTNIIRNQHKIG*
Ga0075434_1018377451	3300006871	Populus Rhizosphere	KEQVLLAMRIVSAKLSLVQRKAQGLPPLNTIRNQHKVG*
Ga0075419_100123828	3300006969	Populus Rhizosphere	PEELAKREEVLVALRLVSAKLNLAQRKTVGVPQATSPNIIRNQHKIG*
Ga0099793_104027591	3300007258	Vadose Zone Soil	LVEKEQVLVALRLVSYKLNLAQRKTQGGPQPNTIRNQHKIG*
Ga0099794_104473311	3300007265	Vadose Zone Soil	KEQVLVALRLVSAKLNLAQRKTQGLPQLNTIRNQHKIG*
Ga0099829_109964921	3300009038	Vadose Zone Soil	KEQVLIALRLVSAKLNLAQRKTQGAPQLNTIRYQRKTG*
Ga0099830_117561892	3300009088	Vadose Zone Soil	RSEEAEAAAAKDQLLLALRLASAKLNLAQRKTQGSPAPGSIRNQHKIG*
Ga0075418_125757251	3300009100	Populus Rhizosphere	EVSAPALTPAELAEKEQVLVALRLVSAKLNLAQRKTIGGPQTTTPNIIRNQHKIG*
Ga0075418_128623981	3300009100	Populus Rhizosphere	EVLVALRLVSAKLNLAQRKTVGVPQTTSPNIIRNQHKIG*
Ga0066709_1010569503	3300009137	Grasslands Soil	QIRQASLTPQELAEKEQVLVALRLLSAKLNLVQRKSQGLPQVNTIRNQHKM*
Ga0114129_128399651	3300009147	Populus Rhizosphere	LRLVSAKLNLAQRKTMGVPQTPSPNIIRNQHKIG*
Ga0105243_120669441	3300009148	Miscanthus Rhizosphere	PPVKRHETLAPRLTPEELAKKEEVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0111538_135170941	3300009156	Populus Rhizosphere	LRLVSAKLNLAQRKTVGVPQTTSPNIIRNQHKIG*
Ga0126382_125226562	3300010047	Tropical Forest Soil	PQEQAEKEQVLVALRLVSAKLNLAQRKTQGLPAPNTIRNQHKIG*
Ga0134109_104120151	3300010320	Grasslands Soil	TPQEQAEKEQVLVALRLVSAKLNLAQRRTQGLPPANTIRNQHKIG*
Ga0134124_118355662	3300010397	Terrestrial Soil	LTPEELALKEQVLLALRLTSTKLNVAQRSVQGAPVSNTIRNQHKIG*
Ga0134127_124814391	3300010399	Terrestrial Soil	LAQREEVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0134122_124869281	3300010400	Terrestrial Soil	LAKKEEVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0134121_128673122	3300010401	Terrestrial Soil	AEKEQLLVALRLVSAKLNLAQRRTQGTPQLNPIRNQHKIG*
Ga0137393_104933473	3300011271	Vadose Zone Soil	APLELTPAELAEKEQVLVALRLVSFKLNVAQRKAQGLPALNPIRNQHKIG*
Ga0137393_110411551	3300011271	Vadose Zone Soil	EREQVLIALRLVSFKLNVAQRKTQGLPAPNSIRNQHKIG*
Ga0137438_10300171	3300011431	Soil	ELAEKQQVLVALRLVSAKLNLAQRKTQGAPQLNSIRNQHKMG*
Ga0137443_11983061	3300011433	Soil	KRPVNRTQVLTPRLTPQQLAEKEQVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0137461_10447403	3300012040	Soil	AEKGQVLIALRLVSAKLNLAQRKTQGTPQLNMIRNQHKIG*
Ga0137389_115694742	3300012096	Vadose Zone Soil	EKEQVLVALRLVSAKLNLAQRKTQGAPQLNTIRNQHKIG*
Ga0137388_104007503	3300012189	Vadose Zone Soil	LAEKEQVLIALRLVSAKLNLAQRKTQGAPQLNTIRNQRKTG*
Ga0137388_114225462	3300012189	Vadose Zone Soil	PQLTPAELAEKEQVLVALRLVSFKLNVAQRKAQGLPAPNSIRNQHKIG*
Ga0137388_114254101	3300012189	Vadose Zone Soil	NDEGARIRGEQAKAAAAKDQLLLALRLASAKLNFAQRKTQGSPAPGSIRNQHKIG*
Ga0137399_112120301	3300012203	Vadose Zone Soil	ELAEKEQVLIALRLVSAKLSLAQRKTQGAPQLNTIRNQRKIG*
Ga0137399_117539771	3300012203	Vadose Zone Soil	QLTPTELAEKEQVLVALRLVSFKLNVAQRKAQGLPAPNSIRNQHKIG*
Ga0137376_100699071	3300012208	Vadose Zone Soil	VIRQPQLTPEELAEKEQVLVALRLVSAKLNLAQRKAQGLPQLNTIRNQHKIG*
Ga0137379_110854641	3300012209	Vadose Zone Soil	KRTPRTVIRQPQLTPEELAEKEQVLVALRLVSAKLNLAQRKAQGFPQLNTIRNQHKIG*
Ga0137379_112367421	3300012209	Vadose Zone Soil	EQVLIALRLLSAKLNLVQRKSQGLPQANTIRNQHKMG*
Ga0137378_102118801	3300012210	Vadose Zone Soil	ELAEKEQVLVALRLLSAKLNLVQRKSQGLPQVNAIRNQHKMG*
Ga0137387_109545381	3300012349	Vadose Zone Soil	QVLVALRLVSFKLNVAQRKTQGLPAPNSIRNQHKIG*
Ga0137369_111430272	3300012355	Vadose Zone Soil	TPEELAEKEQVLIALRLVSAKLNLAQRKAQGAPQLNVIRNQHKIG*
Ga0137361_107981161	3300012362	Vadose Zone Soil	VRTPAPPPLTPAELVERDQVLVALRLVSFKLNVAQRKAQGLPAPNSIRNQHKIG*
Ga0137361_113426651	3300012362	Vadose Zone Soil	TPRTVIRQPELTAEELAEKEQVLVALRLVSYKLNLAQRKTQGGPQPNTIRNQHKIG*
Ga0150984_1109379451	3300012469	Avena Fatua Rhizosphere	KEQVLVALRLVSAKLNLAQRKAQGLPQPNSIRNHKIG*
Ga0137397_105597193	3300012685	Vadose Zone Soil	LTRQPALTPQELAEKEQVLLALRLVSYKLNVAQRKTQGPPPFNTIRNQHKIG*
Ga0137394_102353084	3300012922	Vadose Zone Soil	ELAEKEQVLVALRLVSAKLNLAQRKAQGVLQPNTIRNQHKIG*
Ga0137394_111446281	3300012922	Vadose Zone Soil	LLLALRLASAKLNFAQRKTQGSPAPGTIRNQHKIG*
Ga0137394_113452491	3300012922	Vadose Zone Soil	ALTPQELAEKEQVLVALRLLSAKLNLVQRKSQGLPQVNAIRNQHKMG*
Ga0137359_100693371	3300012923	Vadose Zone Soil	IRRDTSQPELTPQESAEKEQVLIALRLVSAKLNLAQRKTQGAPQFNTIRNQRKIG*
Ga0137419_118686841	3300012925	Vadose Zone Soil	NKNSFTRTVIRQPELTPEELAEKQQVLVALRLVSAKLNVAQRRTQVVPQLNTIRNQRKIG
Ga0164302_102453493	3300012961	Soil	LAINRRPVNKHDVSAPRLTPEELAEREQVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0126369_112215903	3300012971	Tropical Forest Soil	QELAEKDQVLIALRLVSAKLNLAQRKTQTIPQVNTIRN*
Ga0134087_101157861	3300012977	Grasslands Soil	VLVALRLLSAKLNLIQRKSQGLPQVNAIRNQHKMG*
Ga0134087_106878191	3300012977	Grasslands Soil	HRHRIETAKPQLSPAEIAEKEQVLTALRLVSAKLNLAQRRTQSAPSLNLIHNQHKIG*
Ga0157378_125170082	3300013297	Miscanthus Rhizosphere	AEKEQVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0163162_122646681	3300013306	Switchgrass Rhizosphere	NKRPVNKREVSAPQLTPEELAEKEQVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0167632_10129111	3300015085	Glacier Forefield Soil	AALTPQELAEKEQVLVALRLLSAKLNLVQRKSQGLPQVNAIRNQHKMG*
Ga0137418_103027651	3300015241	Vadose Zone Soil	VLVALRLVSAKLNLAQRKAQGVLQPNTIRNQHKIG*
Ga0137418_112104821	3300015241	Vadose Zone Soil	EKQQVLVALRLASAKLNVAQRRTQVVPQLNTIRNQRKIG*
Ga0132255_1017488541	3300015374	Arabidopsis Rhizosphere	EREQVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG*
Ga0182039_109618682	3300016422	Soil	RLTEQELAEKGQVLIALRLASAKLNLAQRKTQTLPQVNPIRN
Ga0163161_103586271	3300017792	Switchgrass Rhizosphere	KEQVLIALRLVSGKLNLVQRKSQGLTPVNSIRNHKIG
Ga0066662_113900991	3300018468	Grasslands Soil	LTAAELAQKDQLIAALRLVSAKLNLAQRKSQGLPQSNIIRNQHRIG
Ga0137408_14448621	3300019789	Vadose Zone Soil	VRREEPRLTTQELAQKEQLITALRLVSAKLNLAQRKSQGLPQANN
Ga0193719_102613402	3300021344	Soil	QSRRSVIRQPVLTPQELAEKEQVLVALRLVSAKLNLAQRKTQGTPQLNSIRNQHKMG
Ga0207693_113664822	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	KEQVLIALRLVSAKLNLAQPKAQALPQVNAIRNQHKIG
Ga0207646_105782651	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ELAEKEQLLVALRLVSAKLNLAQRRTQGTPQLNPIRNQHKIG
Ga0207681_118650542	3300025923	Switchgrass Rhizosphere	LAEKEQLLVAVRLVSAKLSVAQRRTQGTPQLNPIRNQHKIG
Ga0207670_102557203	3300025936	Switchgrass Rhizosphere	QKEQVLIALRLVSAKLNLAQRKTQGLPQVNPIRNHKIG
Ga0207712_100846184	3300025961	Switchgrass Rhizosphere	LLAINKPVKRHETLAPRLTPEELAKREEVLVALRLVSAKLNLAQRKTVGVPQATSPNIIRNQHKIG
Ga0207708_120016172	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	EEVLVALRLVSAKLNLAQRRTVGAPPTTSPNIIRNQHKIG
Ga0207676_116155841	3300026095	Switchgrass Rhizosphere	AQKEQVLIALRLVSAKLNLAQRKAQGLQQVNAIRNQHKIG
Ga0207675_1013496502	3300026118	Switchgrass Rhizosphere	LNKRPVNKREVSAPQLTPEELAQREEVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG
Ga0209153_12610151	3300026312	Soil	NKSRDTAIRQSALTPQELAEKEQVLLALRLVSVKLNLAQRKTQGLPQLNIIRNQHKIG
Ga0209154_10331241	3300026317	Soil	PQELAEKEQVLLALRLVSAKLNLAQRKTQGLPQLNIIRNQHKIG
Ga0209131_10638835	3300026320	Grasslands Soil	NSFTPTVIRQPELTPDELAEKQQVLVALRLVSAKLNLAQRRTQGAPQLNQIRNQHKIG
Ga0257155_10126491	3300026481	Soil	ARNKVRTPAPPQLTPAELAEREQVLVALRLVSAKLNVAQRRTQGLPALNPIRNQHKIG
Ga0209058_11137441	3300026536	Soil	DTAIRQSTLTPQELAEKEQVLLALRLVSAKLNLAQRKSQGLPQPNIIRNQHKIG
Ga0209117_10626692	3300027645	Forest Soil	LAEKEQVLIALRLVSAKLNLAQRKTQGAPQLNNIRNQRKIG
Ga0209011_11519572	3300027678	Forest Soil	ELTPAELAEKEQVLVALRLVSFKLNVAQRKAQGLPAPNSIRNQHKIG
Ga0209701_106106812	3300027862	Vadose Zone Soil	EKEQVLVALRLVSAKLNVAQRKAQGLPAPNSIRNQHKDRMKEL
Ga0209701_107199671	3300027862	Vadose Zone Soil	MRSEEAEAAAAKDQLLLALRLASAKLNLAQRKTQGSPAPGSIRNQHKIG
Ga0209465_101186853	3300027874	Tropical Forest Soil	AEKGQVLIALRLASAKLNLAQRKTQNPVQVNPIRN
Ga0209283_104166621	3300027875	Vadose Zone Soil	LAEREQVLVALRLVSAKLSIAQRRAQGLPAPNSIRNQHKIG
Ga0209488_107692651	3300027903	Vadose Zone Soil	RHIPRPEIREPALTEQELAEKEQVLVALRLVSFKLNLAQRRTQGGPQLNPIRNQHKIG
Ga0137415_114013091	3300028536	Vadose Zone Soil	SVIRQPVLTPQELAEKEQVLVALRLVSAKLNLAQRKTQGTPQINSIRNQHKMG
Ga0307501_102228802	3300031152	Soil	VNKRETITPRLTPEELAEKEQVLVALRLVSAKLNLAQRKTVGAPTTSPNIIRNQHKIG
Ga0310900_102843253	3300031908	Soil	ETLAPRLTPEELAKREEVLVALRLVSAKLNLAQRKTVGVPQTTSPNIIRNQHKIG
Ga0310890_108144832	3300032075	Soil	PRRQLNRNLLAINKPVKRHETLAPRLTPEELAKREEVLVALRLVSAKLNLAQRKTVGVPQTTSPNIIRNQHKIG
Ga0364925_0250011_432_632	3300034147	Sediment	MATSKRPVNRTQTLTPRLTPQELAEKEQVLVALRLVSAKLNLAQRKTVGAPQTTSPNIIRNQHKIG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089066

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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