Metagenome / Metatranscriptome Family F089048

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089048
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	63 residues
Representative Sequence	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNELKSNAKKYKQLERLIENIEEYKTSIY
Number of Associated Samples	72
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	20.18 %
% of genes from short scaffolds (< 2000 bps)	88.99 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (70.642 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (38.532 % of family members)
Environment Ontology (ENVO)	Unclassified (91.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (96.330 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1ACM55_10552992 2GOS2241_10436881 3GOS2239_10477091 4GOS2234_10644421 5GOS2233_10251771 6GOScombined01_1058980611 7JGI26064J46334_10290682 8Ga0066845_104474811 9Ga0066825_101011152 10Ga0066865_101616911 11Ga0066865_102003801 12Ga0066865_102244632 13Ga0066835_100054831 14Ga0066840_100033072 15Ga0066370_101650402 16Ga0066370_103010392 17Ga0066370_103290151 18Ga0068468_10211092 19Ga0068468_10418113 20Ga0068486_12447981 21Ga0099675_10900472 22Ga0068495_11403302 23Ga0099693_10614572 24Ga0099693_14422461 25Ga0099954_10360132 26Ga0099954_13251962 27Ga0099954_13251971 28Ga0100226_14816481 29Ga0100229_11236472 30Ga0111541_102228452 31Ga0115012_102402511 32Ga0115012_110354372 33Ga0160422_101065031 34Ga0160422_102240912 35Ga0160422_105623782 36Ga0163110_103772792 37Ga0163110_105722821 38Ga0163110_106297221 39Ga0163110_112501712 40Ga0163110_113712691 41Ga0163110_114838131 42Ga0163110_117692331 43Ga0163180_105012801 44Ga0163179_102288422 45Ga0163179_105016762 46Ga0163111_102593162 47Ga0181383_10646521 48Ga0181428_10120321 49Ga0181385_11434701 50Ga0181406_11122631 51Ga0187221_11356181 52Ga0193133_10006401 53Ga0211707_10045593 54Ga0211586_10130721 55Ga0211704_10297821 56Ga0211671_10784902 57Ga0211483_100391822 58Ga0211483_101850491 59Ga0211471_10076512 60Ga0211615_10041491 61Ga0211489_101000922 62Ga0211703_100565011 63Ga0211703_101153981 64Ga0211647_101861601 65Ga0211498_102059472 66Ga0211583_101433312 67Ga0211583_103162251 68Ga0211617_101170791 69Ga0211617_103709512 70Ga0211496_101289021 71Ga0211472_100130063 72Ga0211472_104080951 73Ga0211587_102372732 74Ga0211516_101161422 75Ga0211708_101080312 76Ga0211708_101194792 77Ga0211708_101516241 78Ga0211708_101780571 79Ga0211708_102257591 80Ga0211708_104592111 81Ga0211539_100813232 82Ga0211539_102856991 83Ga0211539_103818631 84Ga0211695_102599931 85Ga0211574_101928501 86Ga0211473_102688081 87Ga0211548_100629281 88Ga0211676_100566471 89Ga0211577_100299683 90Ga0211547_105924201 91Ga0211540_10131262 92Ga0209348_10334422 93Ga0209348_10502342 94Ga0209348_10999132 95Ga0209348_11217242 96Ga0209348_11491521 97Ga0209232_10141242 98Ga0208878_10254701 99Ga0208405_10010853 100Ga0208405_10324262 101Ga0208127_10171971 102Ga0208130_10631381 103Ga0207993_10248381 104Ga0209359_100058001 105Ga0183826_10326132 106Ga0310343_101584331 107Ga0310343_103403741 108Ga0310343_107711851 109Ga0315330_103634851
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1ACM55_10552992 2GOS2241_10436881 3GOS2234_10644421 4Ga0066845_104474811 5Ga0163110_105722821 6Ga0181428_10120321 7Ga0181385_11434701 8Ga0211583_101433312
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1ACM55_10552992 2GOS2241_10436881 3GOS2234_10644421 4Ga0066845_104474811 5Ga0163110_105722821 6Ga0181428_10120321 7Ga0181385_11434701 8Ga0211583_101433312
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 79.37% β-sheet: 0.00% Coil/Unstructured: 20.63%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF11753	DUF3310	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	29.36 %
Unclassified	root	N/A	70.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	0.92 %
Unclassified	root	N/A	70.64 %
Viruses	superkingdom	All Organisms → Viruses	28.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.92 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	13.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.68 %
Unclassified	root	N/A	70.64 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	13.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	70.64 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.68 %
Unclassified	root	N/A	70.64 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	13.76 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13.76 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.68 %
Unclassified	root	N/A	70.64 %

Name	Rank	Taxonomy	Distribution
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	5.50 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.92 %
Kyanoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.68 %
Unclassified	root	N/A	70.64 %

Name	Rank	Taxonomy	Distribution
Autographiviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	5.50 %
Lipsvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.68 %
Unclassified	root	N/A	70.64 %
unclassified Eubacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales	0.92 %

Name	Rank	Taxonomy	Distribution
Aegirvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Aegirvirus	5.50 %
Clostridiales bacterium oral taxon 876	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium oral taxon 876	0.92 %
Lipsvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.68 %
Unclassified	root	N/A	70.64 %

Name	Rank	Taxonomy	Distribution
Clostridiales bacterium oral taxon 876	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium oral taxon 876	0.92 %
Lipsvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.68 %
Synechococcus virus SCBP42	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Aegirvirus → Synechococcus virus SCBP42	5.50 %
Unclassified	root	N/A	70.64 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001829\|ACM55_1055299	Not Available	858	Open in IMG/M
3300001945\|GOS2241_1043688	Not Available	1452	Open in IMG/M
3300001962\|GOS2239_1047709	Not Available	1816	Open in IMG/M
3300001964\|GOS2234_1064442	Not Available	1742	Open in IMG/M
3300001969\|GOS2233_1025177	Not Available	782	Open in IMG/M
3300002040\|GOScombined01_105898061	Not Available	2000	Open in IMG/M
3300003185\|JGI26064J46334_1029068	Not Available	1075	Open in IMG/M
3300005432\|Ga0066845_10447481	Not Available	500	Open in IMG/M
3300005510\|Ga0066825_10101115	Not Available	1049	Open in IMG/M
3300005523\|Ga0066865_10161691	Not Available	832	Open in IMG/M

Showing 1 to 10 of 109 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.83%
Oceanic	Environmental → Aquatic → Marine → Oceanic	55.05%
Strait	Environmental → Aquatic → Marine → Strait	4.59%
Unclassified	Environmental → Aquatic → Marine → Unclassified	38.53%

Habitat	Taxonomy	Distribution
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.92%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	20.18%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	38.53%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	33.95%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	38.53%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	27.52%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	10.09%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.92%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.92%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.92%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.59%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.75%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.75%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	2.75%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.92%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	7.34%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001829	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM55, ROCA_DNA132_0.2um_27g	Environmental	Open in IMG/M
3300001945	Marine microbial communities from Galapagos, Equador - GS026	Environmental	Open in IMG/M
3300001962	Marine microbial communities from Cocos Island, Costa Rica - GS023	Environmental	Open in IMG/M
3300001964	Marine microbial communities from Rosario Bank, Honduras - GS018	Environmental	Open in IMG/M
3300001969	Marine microbial communities from Yucatan Channel, Mexico - GS017	Environmental	Open in IMG/M
3300002040	GS000c - Sargasso Station 3	Environmental	Open in IMG/M
3300003185	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV	Environmental	Open in IMG/M
3300005432	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78	Environmental	Open in IMG/M
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental	Open in IMG/M
3300005523	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265	Environmental	Open in IMG/M

Showing 1 to 10 of 72 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ACM55_10552992	3300001829	Marine Plankton	KSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEDYKTSIN*
GOS2241_10436881	3300001945	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIENIEEYKTSIYDLIFLVIL
GOS2239_10477091	3300001962	Marine	MFIPKNLSNLKSYTDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSIYDLIFLAIL
GOS2234_10644421	3300001964	Marine	VIKNCFLSLFFFIVMFIPKNLRHLKSYSDKQFSLLMYKNQIRLLSKSNDNELKSNAKKYKQLERLIEHIEEYKTSIY*
GOS2233_10251771	3300001969	Marine	KNCFLSLFFFIVMFIPKNLRHLKSYSDKQFSLLMYKNQIRLLSKSNDNELKSNAKKYKQLERLIEHIEEYKTSIY*
GOScombined01_1058980611	3300002040	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIENIEDYKSSVY*
JGI26064J46334_10290682	3300003185	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNVLKSNAKKYKQLERLIENIEEYKTSIN*
Ga0066845_104474811	3300005432	Marine	MFIPKNLKNLKSYNDKQFSLLMYKNQIRLLSKSNDNQLKSNTRKFKELERLIERIEEYKTNDYLNV*
Ga0066825_101011152	3300005510	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSIY*
Ga0066865_101616911	3300005523	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSTY*
Ga0066865_102003801	3300005523	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEEYKTSIY*
Ga0066865_102244632	3300005523	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNTKKFKELERLIERIEEYKTSDYLNV*
Ga0066835_100054831	3300005606	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIENIEEYKTSIN*
Ga0066840_100033072	3300005608	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIKLLSKSNDNQLKSNTKKYKQLERLIEHIEEYKTSTY*
Ga0066370_101650402	3300005971	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEDYKSSVY*
Ga0066370_103010392	3300005971	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIE
Ga0066370_103290151	3300005971	Marine	RNLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEEYKTSIY*
Ga0068468_10211092	3300006305	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIEHIEEYKTSIY*
Ga0068468_10418113	3300006305	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEEYETSIN*
Ga0068486_12447981	3300006329	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIENIEEYKTSIN*
Ga0099675_10900472	3300006334	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIENIEDYKTSIN*
Ga0068495_11403302	3300006337	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIDNIEDYKTSDYLNV*
Ga0099693_10614572	3300006345	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIENIEEYKTSIN*
Ga0099693_14422461	3300006345	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIRLLSKSNDNELKSNAKKYKQLERLIENIETYASSID*
Ga0099954_10360132	3300006350	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIDNIEDYKTSIY*
Ga0099954_13251962	3300006350	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIENIETYSSSID*
Ga0099954_13251971	3300006350	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIDNIEDYKTSIN*
Ga0100226_14816481	3300006480	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIENIETYASSID*
Ga0100229_11236472	3300006481	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIRLLSKSNDNELKSNAKKYKQLERLIENIEDYKTSIN*
Ga0111541_102228452	3300008097	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNELKSNAKKYKQLERLIDNIEDYKTSIYDLIFLAIL
Ga0115012_102402511	3300009790	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSIY*
Ga0115012_110354372	3300009790	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEDYKTSIY*
Ga0160422_101065031	3300012919	Seawater	MFIPKNLRNLKSYSDKQFSLLMYKNQLKLLSKSNDNQLKTNTKKFKELERLIERIEEYKTSDYLNV*
Ga0160422_102240912	3300012919	Seawater	MFIPKNLRHLKRYSDKQFSLLMYKNQIKLLSKSNDNQLKTNTKKFKELERLIERIEEYKTSVY*
Ga0160422_105623782	3300012919	Seawater	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNELKSNAKKYKQLERLIENIEEYKTSIY*
Ga0163110_103772792	3300012928	Surface Seawater	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNTKKFKELERLIERIEEYKTSDYLN
Ga0163110_105722821	3300012928	Surface Seawater	MFIPKNLINLKSYNDKQFNLLMYKNQLKLLKKFNDNELKSNAKKYKQLEILIDNIEYYASSSC*
Ga0163110_106297221	3300012928	Surface Seawater	MFIPKNLRHLKRYSDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIEHIEDYKSSVY*
Ga0163110_112501712	3300012928	Surface Seawater	MFIPKNLRHLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSTY*
Ga0163110_113712691	3300012928	Surface Seawater	KNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIENLEEFKTSIY*
Ga0163110_114838131	3300012928	Surface Seawater	MFIPKNLRHLKRYSDKQFSLLMYKNQIKLLSKSNDNQLKFNAKKYKQLERLIEHIKDYKTSIY*
Ga0163110_117692331	3300012928	Surface Seawater	MFIPKNLSNLKSYSDKQFSLLMYKNQIKLLSKSNDNQLKSNAKKYKQLERLIEHIEDYKSSVY*
Ga0163180_105012801	3300012952	Seawater	MFIPKNLSHLKSYSDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIENIETYASSID*
Ga0163179_102288422	3300012953	Seawater	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDHELKSNAKKYKQLERLIENIETYASSID*
Ga0163179_105016762	3300012953	Seawater	MFIPKNLSHLKSYTDKQFSLVMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIENIETYASSNY*
Ga0163111_102593162	3300012954	Surface Seawater	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNQLKSNTKKFKELERLIERIEE*
Ga0181383_10646521	3300017720	Seawater	MFIPKNLSHLKSYNDKQFSLLMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIENIECYTSNNY
Ga0181428_10120321	3300017738	Seawater	SYNDKQFSLLMYKNQLKLLTKSNNIDLKSNTKKYKQLERLIDNIETYTNSSC
Ga0181385_11434701	3300017764	Seawater	IPKNLSHLKSYSDKQFSLLMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIENIECYTSNN
Ga0181406_11122631	3300017767	Seawater	VFYRSFFFIVMFIPKNLSHLKSYNDKQFSLLMYKNQLKLLIKSNDIDLKSNTKKYKQLERLIENIECYTSSNY
Ga0187221_11356181	3300017769	Seawater	KSYTDKQFSLVMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIENIECYTSNNY
Ga0193133_10006401	3300018617	Marine	MFIPKNLSHLKSYTDKQFSLVMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIDNIETYTNNNY
Ga0211707_10045593	3300020246	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIENIETYASSID
Ga0211586_10130721	3300020255	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSIY
Ga0211704_10297821	3300020257	Marine	SHLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIENIETYASSID
Ga0211671_10784902	3300020270	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIENIEEYKTSIN
Ga0211483_100391822	3300020281	Marine	MFIPKNLRHLKSYSDKQFSLLMYKNQIKLLSKTNDNELKSNAKKYKQLERLIEHIEDYKSSVY
Ga0211483_101850491	3300020281	Marine	VMFIPKNLRHLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSTY
Ga0211471_10076512	3300020287	Marine	MFIPKNLRHLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEDYKSSVY
Ga0211615_10041491	3300020299	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNQLKSNTRKFKELERLIERIEEYKTNDYLNV
Ga0211489_101000922	3300020366	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIKLLSKSNDNVLKSNAKKYKQLERLIENIETYASSID
Ga0211703_100565011	3300020367	Marine	MFIPKNLKNLKSYNDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIENIETYASSID
Ga0211703_101153981	3300020367	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIDNIEDYKTSIY
Ga0211647_101861601	3300020377	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNQLKSNTKKFKELERLIERIEEYKTSIY
Ga0211498_102059472	3300020380	Marine	MFIPKNLINLKSYNDKQFNLLMYKNQLKLLKKFNDNELKSNAKKYKQLEILIDNIEYYASSSC
Ga0211583_101433312	3300020397	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEH
Ga0211583_103162251	3300020397	Marine	MFIPKNLINLKSYNDKQFNLLMYKNQIKLLKKFNDNELKSNAKKYKQLEILIDNIEYYASSSC
Ga0211617_101170791	3300020401	Marine	MFIPKNLKNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIENIENYKTSNY
Ga0211617_103709512	3300020401	Marine	MFIPKNLRQLKSYSDKQFSLLMYKNQIKLLSKSNDNQLKSNAKKYKQLERLIEHMEDYKTSIY
Ga0211496_101289021	3300020405	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIEHIEEYKSSIY
Ga0211472_100130063	3300020409	Marine	MFIPKNLRHLKSYSDKQFSLLMYKNQIKLLSKTNDNELKSNAKKYKQLERLIEHIEEYKTSIY
Ga0211472_104080951	3300020409	Marine	RNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSTY
Ga0211587_102372732	3300020411	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEEYKTSIY
Ga0211516_101161422	3300020413	Marine	MFIPKNLSHLKSYTDKQFSLVMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIENIETYASSNY
Ga0211708_101080312	3300020436	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKFNTKKFKELERLIERIEEYKTSDYLNV
Ga0211708_101194792	3300020436	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNQLKSNAKKYKQLERLIEHIEEYKTSDYLNV
Ga0211708_101516241	3300020436	Marine	YFFSFIIFVIMFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSIY
Ga0211708_101780571	3300020436	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDNELKSNAKKYKQLERLIEHIEEYKTSIY
Ga0211708_102257591	3300020436	Marine	NLKNLKSYNDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIDNIEDYKTSNY
Ga0211708_104592111	3300020436	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEDYKTSIY
Ga0211539_100813232	3300020437	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEDYKTSIY
Ga0211539_102856991	3300020437	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEEYKTSTY
Ga0211539_103818631	3300020437	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNQLKSNAKKYKQLERLIEHIEDYKTSNYLNV
Ga0211695_102599931	3300020441	Marine	MFIPKNLSHLKSYSDKQFSLLMYKNQIRLLSKSNDNVLKSNAKKYKQLERLIENIEEYKTSIN
Ga0211574_101928501	3300020446	Marine	KNLKSYNDKQFSLLMYKNQIRLLSKSNDNQLKSNTKKFKELERLIERIEEYKTSDYLNV
Ga0211473_102688081	3300020451	Marine	MFIPKNLKNLKSYNDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIENIETYASSID
Ga0211548_100629281	3300020454	Marine	HSFFIVMFIPKNLSHLKSYTDKQFSLVMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIDNIETYASSNY
Ga0211676_100566471	3300020463	Marine	MFIPKNLSHLKSYTDKQFSLVMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIDNIETYASSNY
Ga0211577_100299683	3300020469	Marine	MFIPKNLSHLKSYSDKQFSLVMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIENIETYANSID
Ga0211547_105924201	3300020474	Marine	KNLSHLKSYTDKQFSLVMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIENIETYASSNY
Ga0211540_10131262	3300020584	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEEYKTSIYXDLIFLAIL
Ga0209348_10334422	3300025127	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIENIEEYKTSIN
Ga0209348_10502342	3300025127	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDNQLKSNTKKFKELERLIERIEEYKTSDYLNV
Ga0209348_10999132	3300025127	Marine	MFIPKNLKNLKSYSDKQFSLLMYKNQIKLLSKSNDNQLKSNAKKYKQLERLIEHIEEFKTSIY
Ga0209348_11217242	3300025127	Marine	MFIPKNLKNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIENIEEFKTSIY
Ga0209348_11491521	3300025127	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIKLLSKSNDNQLKSNAKKYKQLERLIEHIEEYKTSTY
Ga0209232_10141242	3300025132	Marine	MFIPKNLSHLKSYNDKQFSLLMYKNQIKLLSKSNDIDLKSNTKKYKQLERLIDNIETYTNNNY
Ga0208878_10254701	3300026083	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEDYKSSVY
Ga0208405_10010853	3300026189	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIKLLSKSNDNQLKSNTKKYKQLERLIEHIEEYKTSTY
Ga0208405_10324262	3300026189	Marine	LRNLKSYSDKQFSLLMYKNQIKLLSKSNDNELKSNAKKYKQLERLIENIEEYKTSIN
Ga0208127_10171971	3300026201	Marine	MFIPKNLRHLKRYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSIY
Ga0208130_10631381	3300026258	Marine	MFIPKNLKNLKSYNDKQFSLLMYKNQIRLLSKSNDNQLKSNTKKFKELERLIERIEEYKTSIY
Ga0207993_10248381	3300026270	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLSKSNDHELKSNAKKYKQLERLIEHIEEYKTSTY
Ga0209359_100058001	3300027830	Marine	MFIPKNLRNLKSYSDKQFSLLMYKNQIKLLSKSNDNVLKSNAKKYKQLERLIENIEEYKTSIN
Ga0183826_10326132	3300029792	Marine	KSYSDKQFSLLMYKNQIRLLSKTNDNVLKSNAKKYKQLERLIEHIEEYKTSIY
Ga0310343_101584331	3300031785	Seawater	MFIPKNLRHLKSYSDKQFSLLMYKNQIRLLSKTNDNELKSNAKKYKQLERLIEHIEEYKTSIY
Ga0310343_103403741	3300031785	Seawater	MFIPKNLRNLKSYSDKQFSLLMYKNQIRLLRKSNDNQLKSNAKKYKQLERLIDNIEDYKTSDYLNV
Ga0310343_107711851	3300031785	Seawater	SYSDKQFSLLMYKNQIRLLSKSNDNQLKSNAKKYKQLERLIEHIEEYKTSIN
Ga0315330_103634851	3300032047	Seawater	MFIPKNLSHLKSYNDKQFSLLMYKNQLKLLSKSNDIDLKSNTKKYKQLERLIENIECYTSSNY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089048

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences