Metagenome / Metatranscriptome Family F089002

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Overview

Basic Information
Family ID	F089002
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	53 residues
Representative Sequence	LNITDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Number of Associated Samples	93
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	89.91 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.725 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (33.027 % of family members)
Environment Ontology (ENVO)	Unclassified (51.376 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (94.495 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.38% β-sheet: 0.00% Coil/Unstructured: 50.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF05050	Methyltransf_21	61.47
PF08241	Methyltransf_11	5.50

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.49 %
Unclassified	root	N/A	16.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.72 %
Unclassified	root	N/A	16.51 %
Viruses	superkingdom	All Organisms → Viruses	13.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.72 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	67.89 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	65.14 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.83 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	65.14 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	65.14 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	65.14 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	65.14 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	65.14 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
Maribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter	1.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	65.14 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
unclassified Maribacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter	1.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	65.14 %
Unclassified	root	N/A	16.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.76 %
Maribacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000115\|DelMOSum2011_c10112450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	868	Open in IMG/M
3300001460\|JGI24003J15210_10063566	All Organisms → Viruses → Predicted Viral	1178	Open in IMG/M
3300002483\|JGI25132J35274_1019090	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1631	Open in IMG/M
3300005512\|Ga0074648_1129661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	810	Open in IMG/M
3300006025\|Ga0075474_10275684	Not Available	501	Open in IMG/M
3300006026\|Ga0075478_10165736	Not Available	685	Open in IMG/M
3300006026\|Ga0075478_10220096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	576	Open in IMG/M
3300006352\|Ga0075448_10151845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	717	Open in IMG/M
3300006735\|Ga0098038_1064242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1307	Open in IMG/M
3300006735\|Ga0098038_1112306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	932	Open in IMG/M
3300006810\|Ga0070754_10278507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	756	Open in IMG/M
3300006916\|Ga0070750_10112320	All Organisms → Viruses → Predicted Viral	1255	Open in IMG/M
3300006919\|Ga0070746_10305475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	730	Open in IMG/M
3300007345\|Ga0070752_1373988	Not Available	531	Open in IMG/M
3300007539\|Ga0099849_1216754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	714	Open in IMG/M
3300007725\|Ga0102951_1230769	Not Available	525	Open in IMG/M
3300007778\|Ga0102954_1102389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	806	Open in IMG/M
3300008012\|Ga0075480_10061282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	2178	Open in IMG/M
3300009027\|Ga0102957_1106457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	980	Open in IMG/M
3300009077\|Ga0115552_1201514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	816	Open in IMG/M
3300009193\|Ga0115551_1215101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	859	Open in IMG/M
3300009449\|Ga0115558_1395373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	540	Open in IMG/M
3300009496\|Ga0115570_10435949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	554	Open in IMG/M
3300009498\|Ga0115568_10072865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1751	Open in IMG/M
3300009498\|Ga0115568_10372300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	622	Open in IMG/M
3300009790\|Ga0115012_10145752	All Organisms → cellular organisms → Bacteria → Proteobacteria	1700	Open in IMG/M
3300012919\|Ga0160422_10495407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	768	Open in IMG/M
3300012954\|Ga0163111_12265440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	550	Open in IMG/M
3300016762\|Ga0182084_1322623	Not Available	536	Open in IMG/M
3300017697\|Ga0180120_10163064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	939	Open in IMG/M
3300017719\|Ga0181390_1015058	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	2625	Open in IMG/M
3300017730\|Ga0181417_1111716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	661	Open in IMG/M
3300017732\|Ga0181415_1052908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	923	Open in IMG/M
3300017737\|Ga0187218_1048323	All Organisms → Viruses → Predicted Viral	1063	Open in IMG/M
3300017743\|Ga0181402_1060187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1013	Open in IMG/M
3300017744\|Ga0181397_1183873	Not Available	527	Open in IMG/M
3300017746\|Ga0181389_1055401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1148	Open in IMG/M
3300017749\|Ga0181392_1082349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	969	Open in IMG/M
3300017750\|Ga0181405_1093184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	762	Open in IMG/M
3300017755\|Ga0181411_1148573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	675	Open in IMG/M
3300017759\|Ga0181414_1032489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1411	Open in IMG/M
3300017771\|Ga0181425_1157851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	718	Open in IMG/M
3300017771\|Ga0181425_1261593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	534	Open in IMG/M
3300017818\|Ga0181565_10561489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	736	Open in IMG/M
3300017824\|Ga0181552_10587779	Not Available	518	Open in IMG/M
3300017949\|Ga0181584_10021028	All Organisms → cellular organisms → Bacteria → Proteobacteria	4770	Open in IMG/M
3300017949\|Ga0181584_10574490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	685	Open in IMG/M
3300017949\|Ga0181584_10699150	Not Available	606	Open in IMG/M
3300017951\|Ga0181577_10223742	All Organisms → Viruses → Predicted Viral	1248	Open in IMG/M
3300017958\|Ga0181582_10270587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1126	Open in IMG/M
3300017964\|Ga0181589_10105713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	2035	Open in IMG/M
3300017964\|Ga0181589_10106452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	2025	Open in IMG/M
3300017967\|Ga0181590_10560599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	787	Open in IMG/M
3300017969\|Ga0181585_10050945	All Organisms → cellular organisms → Bacteria → Proteobacteria	3237	Open in IMG/M
3300017969\|Ga0181585_10570678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	752	Open in IMG/M
3300017969\|Ga0181585_10706139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	659	Open in IMG/M
3300017969\|Ga0181585_10778516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	621	Open in IMG/M
3300017969\|Ga0181585_10843854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	591	Open in IMG/M
3300018048\|Ga0181606_10044658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	3061	Open in IMG/M
3300018417\|Ga0181558_10593968	Not Available	570	Open in IMG/M
3300018421\|Ga0181592_10085630	All Organisms → Viruses → Predicted Viral	2466	Open in IMG/M
3300018421\|Ga0181592_10365601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1027	Open in IMG/M
3300018423\|Ga0181593_10681052	Not Available	731	Open in IMG/M
3300018424\|Ga0181591_10459025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	937	Open in IMG/M
3300018428\|Ga0181568_11061960	Not Available	613	Open in IMG/M
3300018876\|Ga0181564_10205006	All Organisms → Viruses → Predicted Viral	1143	Open in IMG/M
3300019765\|Ga0194024_1107752	Not Available	639	Open in IMG/M
3300020056\|Ga0181574_10202980	All Organisms → Viruses → Predicted Viral	1269	Open in IMG/M
3300020175\|Ga0206124_10025109	All Organisms → Viruses → Predicted Viral	2869	Open in IMG/M
3300020185\|Ga0206131_10422687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	549	Open in IMG/M
3300020274\|Ga0211658_1092124	Not Available	601	Open in IMG/M
3300020347\|Ga0211504_1123230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	575	Open in IMG/M
3300020379\|Ga0211652_10283513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	509	Open in IMG/M
3300020385\|Ga0211677_10388910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	543	Open in IMG/M
3300020388\|Ga0211678_10141325	All Organisms → Viruses → Predicted Viral	1038	Open in IMG/M
3300020404\|Ga0211659_10365814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	629	Open in IMG/M
3300020410\|Ga0211699_10233921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	707	Open in IMG/M
3300020421\|Ga0211653_10141390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1064	Open in IMG/M
3300020428\|Ga0211521_10196685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	923	Open in IMG/M
3300020469\|Ga0211577_10377050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	881	Open in IMG/M
3300021365\|Ga0206123_10177166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	961	Open in IMG/M
3300021958\|Ga0222718_10162557	All Organisms → Viruses → Predicted Viral	1250	Open in IMG/M
3300021959\|Ga0222716_10374001	Not Available	836	Open in IMG/M
3300021960\|Ga0222715_10269534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	981	Open in IMG/M
3300022900\|Ga0255771_1186853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	792	Open in IMG/M
3300022907\|Ga0255775_1048798	All Organisms → Viruses → Predicted Viral	2123	Open in IMG/M
3300022923\|Ga0255783_10129557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1261	Open in IMG/M
3300022923\|Ga0255783_10228059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	813	Open in IMG/M
3300022925\|Ga0255773_10397816	Not Available	524	Open in IMG/M
3300022934\|Ga0255781_10144847	All Organisms → Viruses → Predicted Viral	1232	Open in IMG/M
3300023115\|Ga0255760_10203161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1056	Open in IMG/M
3300023115\|Ga0255760_10350199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	704	Open in IMG/M
3300023173\|Ga0255776_10519910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	601	Open in IMG/M
3300023175\|Ga0255777_10201868	All Organisms → Viruses → Predicted Viral	1192	Open in IMG/M
3300024301\|Ga0233451_10092387	All Organisms → Viruses → Predicted Viral	1540	Open in IMG/M
3300024344\|Ga0209992_10226360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	785	Open in IMG/M
3300025102\|Ga0208666_1096084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	737	Open in IMG/M
3300025610\|Ga0208149_1149586	Not Available	533	Open in IMG/M
3300025630\|Ga0208004_1102978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	674	Open in IMG/M
3300025653\|Ga0208428_1069243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1036	Open in IMG/M
3300025751\|Ga0208150_1012167	All Organisms → Viruses → Predicted Viral	3096	Open in IMG/M
3300025751\|Ga0208150_1183463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	652	Open in IMG/M
3300025803\|Ga0208425_1095393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	698	Open in IMG/M
3300025832\|Ga0209307_1235753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	519	Open in IMG/M
3300025892\|Ga0209630_10216484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	920	Open in IMG/M
3300025892\|Ga0209630_10377332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	620	Open in IMG/M
3300027859\|Ga0209503_10663851	Not Available	520	Open in IMG/M
3300028111\|Ga0233397_1140681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	566	Open in IMG/M
3300028132\|Ga0228649_1120127	Not Available	642	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	95.41%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.67%
Freshwater	Environmental → Aquatic → Freshwater	0.92%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	33.03%
Coastal	Environmental → Aquatic → Marine → Coastal	16.51%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.84%
Strait	Environmental → Aquatic → Marine → Strait	11.93%
Pelagic	Environmental → Aquatic → Marine → Pelagic	9.17%
Oceanic	Environmental → Aquatic → Marine → Oceanic	8.26%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.67%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.75%
River	Environmental → Aquatic → Freshwater → River	0.92%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.92%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	33.03%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	16.51%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.84%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	11.93%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	9.17%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	6.42%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.75%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.83%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.92%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.92%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	33.03%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	13.76%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	11.93%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	10.09%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	6.42%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	6.42%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.75%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	2.75%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.83%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.83%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	1.83%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.92%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.92%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.92%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.92%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.92%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.92%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.92%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006352	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007725	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009449	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426	Environmental	Open in IMG/M
3300009496	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524	Environmental	Open in IMG/M
3300009498	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300016762	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071413CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017730	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13	Environmental	Open in IMG/M
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental	Open in IMG/M
3300017737	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017749	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15	Environmental	Open in IMG/M
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018048	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018423	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018876	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020056	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental	Open in IMG/M
3300020274	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)	Environmental	Open in IMG/M
3300020347	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)	Environmental	Open in IMG/M
3300020379	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)	Environmental	Open in IMG/M
3300020385	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)	Environmental	Open in IMG/M
3300020388	Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020410	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020428	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022900	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG	Environmental	Open in IMG/M
3300022907	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG	Environmental	Open in IMG/M
3300022923	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG	Environmental	Open in IMG/M
3300022925	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG	Environmental	Open in IMG/M
3300022934	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG	Environmental	Open in IMG/M
3300023115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG	Environmental	Open in IMG/M
3300023173	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG	Environmental	Open in IMG/M
3300023175	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG	Environmental	Open in IMG/M
3300024301	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504CT (spades assembly)	Environmental	Open in IMG/M
3300024344	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025630	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025653	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025751	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025832	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)	Environmental	Open in IMG/M
3300025892	Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)	Environmental	Open in IMG/M
3300027859	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028111	Seawater microbial communities from Monterey Bay, California, United States - 35D	Environmental	Open in IMG/M
3300028132	Seawater microbial communities from Monterey Bay, California, United States - 61D	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2011_101124502	3300000115	Marine	IQDGNLRNIRRAVADYNKLNTRMKLQTLHRLQQQLHSKLPNTDILKKFKEL*
JGI24003J15210_100635663	3300001460	Marine	EEHFKNLTHLERSLNITDANLKNIRRAVANYNKLNAKLKMQTLHRLQQQLQSKLPNTDIHKKFKEL*
JGI25132J35274_10190901	3300002483	Marine	NIRRSVANYDKLNSRAKMQTLHRLQQQLQSKLPNTDLLKKFKEL*
Ga0074648_11296611	3300005512	Saline Water And Sediment	ERALNITDANLKNIRRSVANYNKLESRLKLQTLHRLQQQLQAKLPNTDILRKFKEL*
Ga0075474_102756841	3300006025	Aqueous	NITDANLKNIRRAVADYNNLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0075478_101657361	3300006026	Aqueous	LNIQDANLKNIRRAVANYGRLESRLKLQTLHRLQQQLQAKLSNTDILKKFKEL*
Ga0075478_102200961	3300006026	Aqueous	IQDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0075448_101518452	3300006352	Marine	LERALNITDANYKNVRRAVANYTNLNSKIKSQTLVKLKQMLQSKLPNTDIHKKIKEL*
Ga0098038_10642421	3300006735	Marine	RSLNIRDANLKNIRRAVANYNRLDSKMKLQTLHRLKQQLQSKLPNTDILKKFKEL*
Ga0098038_11123061	3300006735	Marine	NIRRAVANYTKLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL*
Ga0070754_102785071	3300006810	Aqueous	NIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0070750_101123201	3300006916	Aqueous	NITDANLKNIRRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0070746_103054751	3300006919	Aqueous	IRRAVANYTKLDSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL*
Ga0070752_13739881	3300007345	Aqueous	KNLTHLERSLNITDANLKNIRRAVADYNNLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL*
Ga0099849_12167541	3300007539	Aqueous	SLRRNIANYNGLESRLKLQTLHRLQQQLQAKLPNTDLHKKFKEL*
Ga0102951_12307691	3300007725	Water	YRNLTHLERSLNITDANLKNIRRAVADYNNLNSKMKMQTLHRLQQQLQAKLPNTDILKRFKEL*
Ga0102954_11023892	3300007778	Water	TDANLKNIRRAVANYHSLNTKMKMQTLHRLQQQLQSKLPNTDILKKFKEL*
Ga0075480_100612824	3300008012	Aqueous	ITDANLKNIRRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0102957_11064572	3300009027	Pond Water	KNIRRAVANYKSLDSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL*
Ga0115552_12015141	3300009077	Pelagic Marine	LNIKDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL*
Ga0115551_12151012	3300009193	Pelagic Marine	VADYNNLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0115558_13953731	3300009449	Pelagic Marine	NLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEP*
Ga0115570_104359491	3300009496	Pelagic Marine	NLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0115568_100728654	3300009498	Pelagic Marine	LERSLNITDANLKNIRRAVANYTKLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL*
Ga0115568_103723001	3300009498	Pelagic Marine	LRTWEDHFKNLTHLERALNIQDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0115012_101457524	3300009790	Marine	DYMGLNSRSKQQTVNKLKQMLQAKLPNTDIHKKFKEL*
Ga0160422_104954071	3300012919	Seawater	SYEDHYKNLTNLERALNINDSNLRNIRRAVANYSNLNVKMKLQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0163111_122654401	3300012954	Surface Seawater	HLERSLNIQDANLKNIRRAVANYTKLNSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL*
Ga0182084_13226232	3300016762	Salt Marsh	ERALNITDANLKNIRRAVANYKSLDARMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0180120_101630642	3300017697	Freshwater To Marine Saline Gradient	IRDANLKNIRRAVANYTKLNSQMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181390_10150586	3300017719	Seawater	WEDHYKNLTHLERSLNINDANLKNIRRAVANYNKLDSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181417_11117161	3300017730	Seawater	RSWEDHFKNLTHLERALNITDANLKNIRRAVANYTKLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181415_10529082	3300017732	Seawater	RDANLKNIRRAVANYNKLDARLKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0187218_10483231	3300017737	Seawater	NITDANLKNIRRAVANYHSLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181402_10601871	3300017743	Seawater	HYKNLTHIERSLNIRDANLKNIRRAVANYNKLDARLKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181397_11838732	3300017744	Seawater	RTWEEHYKNLTHIERSLNIRDANLKNIRRAVANYNKLDARLKMQTLHRLQQQLQSKLPNTDILKKFKDL
Ga0181389_10554011	3300017746	Seawater	EAVANYKKLNIKSKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181392_10823492	3300017749	Seawater	NLRRAVANYTKLDSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181405_10931842	3300017750	Seawater	RTWEDHFKILTHLERSLNITDANLKNIRRAVANYHSLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181411_11485731	3300017755	Seawater	ITDANLKNIRRAVANYHSLNTKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181414_10324893	3300017759	Seawater	NIQDANLKNIRRAVANYNKLNSKMKMQTLHRLQQQLQSKLPNTDILRKFKEL
Ga0181425_11578511	3300017771	Seawater	EDHFKNLTHLERSLNITDANLKNIRRAVANYHSLNTKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181425_12615931	3300017771	Seawater	EHYKNLTHIERSLNIRDANLKNIRRAVANYNKLDARLKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0181565_105614891	3300017818	Salt Marsh	RRWEEHFKNLTHLERSLNITDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181552_105877792	3300017824	Salt Marsh	DANLKNIRRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181584_1002102810	3300017949	Salt Marsh	HYKNLTHLERALNITDANLKNIRRAVANYKSLDARMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181584_105744901	3300017949	Salt Marsh	YNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181584_106991501	3300017949	Salt Marsh	HLERSLNITDANLKNIRRAVADYNNLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181577_102237421	3300017951	Salt Marsh	ALNIQDANLKNIRRAVANYTKLDSRTKMQTLHRLHQQLQSKLPNTDILKKFKEL
Ga0181582_102705871	3300017958	Salt Marsh	QDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181589_101057131	3300017964	Salt Marsh	NITDANLKNIRRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDLHRKFKEL
Ga0181589_101064524	3300017964	Salt Marsh	LTHLEMAHNITDANLKNIRRAVANYHSVNSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181590_105605992	3300017967	Salt Marsh	ANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181585_100509451	3300017969	Salt Marsh	DANLKNIRRAVANYTKLDSKMKIQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181585_105706781	3300017969	Salt Marsh	NRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181585_107061391	3300017969	Salt Marsh	VANYTKLDARTKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181585_107785161	3300017969	Salt Marsh	VANYSKLDSKTKVQTLHMLKQQAHAKLPNTDIHKRFKEL
Ga0181585_108438541	3300017969	Salt Marsh	ALNITDANLKNIRRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181606_100446581	3300018048	Salt Marsh	NITDANLKNIRRAVANYTKLDSKMKIQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181558_105939681	3300018417	Salt Marsh	HFKNLTMLERALNITDANYKNIRRAVANFTKLNPKEKIHTITKLKNILQSKLPNTDLHKKFKEL
Ga0181592_100856301	3300018421	Salt Marsh	NLTHLERALNITDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKE
Ga0181592_103656011	3300018421	Salt Marsh	LKNIRRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181593_106810522	3300018423	Salt Marsh	KNIRRSVANYTRLESRLKLQTLHRLQQQLQAKLPNTDLHKKFKEL
Ga0181591_104590252	3300018424	Salt Marsh	SVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181568_110619601	3300018428	Salt Marsh	DHYKNLTHLERSLNIQDANLKNIRRAVANYTKLDSKMKIQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0181564_102050063	3300018876	Salt Marsh	ERALNITDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0194024_11077521	3300019765	Freshwater	NLTMLERALNITDANYKNIRRAVANFTKLNPKEKIHTITKLKNILQSKLPNTDLHKKFKE
Ga0181574_102029801	3300020056	Salt Marsh	LNITDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0206124_100251096	3300020175	Seawater	VANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0206131_104226872	3300020185	Seawater	THLERSLNIQDANLKNIRRAVADYNNLNSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0211658_10921242	3300020274	Marine	VANYTKLDARMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0211504_11232301	3300020347	Marine	RSLNIQDGNLRNIRRAVADYNKLNAKMKLQTLHRLQQQLHSKLPNTDILKKFKEL
Ga0211652_102835131	3300020379	Marine	EDHFKNLTHLERALNITDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0211677_103889102	3300020385	Marine	AVANYTKLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0211678_101413253	3300020388	Marine	TWEEHFKNLTHLERSLNITDANLKNIRRAVANYTKLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0211659_103658142	3300020404	Marine	RDANLKNIRRAVANYTKLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0211699_102339212	3300020410	Marine	INDSNLRNIRRAVANYNKLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0211653_101413903	3300020421	Marine	DANLKNIRRAVANYTKLDARMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0211521_101966852	3300020428	Marine	LNIQDANLKNIRRAVANYHSLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0211577_103770502	3300020469	Marine	NLKNIRRAVANYGRLDARRKIQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0206123_101771662	3300021365	Seawater	ANLKNIRRAVANYSSLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0222718_101625573	3300021958	Estuarine Water	LNIQDANLKNIRRAVADYNNLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0222716_103740012	3300021959	Estuarine Water	VADYNNLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0222715_102695342	3300021960	Estuarine Water	YNNLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255771_11868532	3300022900	Salt Marsh	QDANLKNIRRAVANYTKLDARTKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255775_10487981	3300022907	Salt Marsh	TWEDHYRNLTHLERALNITDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255783_101295573	3300022923	Salt Marsh	DSNLKNIRRAVANYNKLDSRSKLQTLNRLKQQLQSKLPNTDILRKFKEL
Ga0255783_102280592	3300022923	Salt Marsh	QLERALNITDANLKNIRRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255773_103978162	3300022925	Salt Marsh	RTWEDHYKNLTHLERSLNIQDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255781_101448471	3300022934	Salt Marsh	YRNLTQVERALNIQDANLKNIRRAVANYTKLDARTKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255760_102031611	3300023115	Salt Marsh	RRSVANYNQLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255760_103501993	3300023115	Salt Marsh	NIRRAVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255776_105199102	3300023173	Salt Marsh	VANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0255777_102018681	3300023175	Salt Marsh	SWEDHYRNLTQVERALNIQDANLKNIRRAVANYTKLDARTKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0233451_100923873	3300024301	Salt Marsh	MRTWEDHYKNLTHLERALNIQDANLKNIRRAVANYTKLDARTKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0209992_102263601	3300024344	Deep Subsurface	NLSQLERALNINDANLRNIRRAVANYKNLDARQKMQALQRLRQQLQSKLPNTDILKKFKE
Ga0208666_10960842	3300025102	Marine	LRTWEDHYKNLTHLERSLNIQDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0208149_11495861	3300025610	Aqueous	EHFKNLTMLERALNITDANYKNIRRAVANFTKLNPKEKIHTITKLKNILQSKLPNTDLHKKFKEL
Ga0208004_11029782	3300025630	Aqueous	ADYNNLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0208428_10692432	3300025653	Aqueous	LERALNITDANLKNIRRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0208150_10121677	3300025751	Aqueous	LERALNIQDANLKNIRRAVANYTKLDSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0208150_11834631	3300025751	Aqueous	RRSVANYNRLESRLKLQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0208425_10953931	3300025803	Aqueous	HFKNLTHLERSLNITDANLKNIRRAVANYTKLDVRTKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0209307_12357531	3300025832	Pelagic Marine	TQLERSLNIQDGNLRNIRRAVADYNKLNTRMKLQTLHRLQQQLHSKLPNTDILKKFKEL
Ga0209630_102164841	3300025892	Pelagic Marine	DATLKNIRRAVADYNNLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0209630_103773322	3300025892	Pelagic Marine	NLKNIRRAVADYNNLNSKMKMQTLHRLQQQLQAKLPNTDILKKFKEL
Ga0209503_106638511	3300027859	Marine	RSWEDHYKNLTNLERALGIQDANLRNIRRAVANYNKLDSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0233397_11406811	3300028111	Seawater	RYMRTWEDHFKNLTHLERSLNITDANLKNIRRAVANYHSLNTKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0228649_11201271	3300028132	Seawater	LTHLERALNITDANLKNIRRAVANYTKLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089002

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences