Metagenome Family F088994

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088994
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	RQHFDPVDIVTEVANRADHALELAVAQGAGKIVSQAPQFAASAAVA
Number of Associated Samples	95
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.67 %
% of genes near scaffold ends (potentially truncated)	96.33 %
% of genes from short scaffolds (< 2000 bps)	89.91 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (12.844 % of family members)
Environment Ontology (ENVO)	Unclassified (41.284 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.780 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.14% β-sheet: 0.00% Coil/Unstructured: 64.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00108	Thiolase_N	65.14
PF02803	Thiolase_C	10.09
PF02737	3HCDH_N	6.42
PF00990	GGDEF	1.83
PF00085	Thioredoxin	1.83
PF00885	DMRL_synthase	0.92
PF13673	Acetyltransf_10	0.92
PF00266	Aminotran_5	0.92
PF02867	Ribonuc_red_lgC	0.92
PF01590	GAF	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	75.23
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	6.42
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	6.42
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	6.42
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	6.42
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	6.42
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	6.42
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	6.42
COG0054	6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain)	Coenzyme transport and metabolism [H]	0.92
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.33 %
Unclassified	root	N/A	3.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.33 %
Unclassified	root	N/A	3.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.50 %
Unclassified	root	N/A	3.67 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	86.24 %
Unclassified	root	N/A	3.67 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1.83 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	21.10 %
Unclassified	root	N/A	3.67 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.75 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	1.83 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.10 %
Unclassified	root	N/A	3.67 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.75 %
Fungi incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis	1.83 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.10 %
Unclassified	root	N/A	3.67 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.75 %
Mucoromycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota	1.83 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.10 %
Unclassified	root	N/A	3.67 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.75 %
Mucoromycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina	1.83 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.10 %
Unclassified	root	N/A	3.67 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.75 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1.83 %
Endogonomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.10 %
Unclassified	root	N/A	3.67 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.75 %
Endogonales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes → Endogonales	1.83 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.10 %
Unclassified	root	N/A	3.67 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.75 %
Endogonaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes → Endogonales → Endogonaceae	1.83 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.10 %
Unclassified	root	N/A	3.67 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.75 %
Jimgerdemannia	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes → Endogonales → Endogonaceae → Jimgerdemannia	1.83 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.10 %
Unclassified	root	N/A	3.67 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.75 %
Jimgerdemannia flammicorona	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes → Endogonales → Endogonaceae → Jimgerdemannia → Jimgerdemannia flammicorona	1.83 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10749570	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300004091\|Ga0062387_101204818	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300004092\|Ga0062389_101927011	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300004152\|Ga0062386_101841544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	505	Open in IMG/M
3300005591\|Ga0070761_10044009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2508	Open in IMG/M
3300005921\|Ga0070766_10036969	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2691	Open in IMG/M
3300006052\|Ga0075029_101103586	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300006059\|Ga0075017_100669477	All Organisms → cellular organisms → Bacteria → Acidobacteria	797	Open in IMG/M
3300006102\|Ga0075015_100866799	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300006354\|Ga0075021_10317817	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300006642\|Ga0075521_10568952	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300006893\|Ga0073928_11028634	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300007265\|Ga0099794_10488828	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300007265\|Ga0099794_10651600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300009089\|Ga0099828_10499026	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300009518\|Ga0116128_1123463	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300009522\|Ga0116218_1272087	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300009549\|Ga0116137_1179419	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300009632\|Ga0116102_1027699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1908	Open in IMG/M
3300009637\|Ga0116118_1095238	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300009640\|Ga0116126_1140653	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300009640\|Ga0116126_1196884	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300009643\|Ga0116110_1109035	All Organisms → cellular organisms → Bacteria → Acidobacteria	935	Open in IMG/M
3300009644\|Ga0116121_1133541	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300009644\|Ga0116121_1247661	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300009709\|Ga0116227_10524634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300010339\|Ga0074046_10447014	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300010341\|Ga0074045_10096943	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2044	Open in IMG/M
3300010341\|Ga0074045_11060557	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300010379\|Ga0136449_100406471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2413	Open in IMG/M
3300010379\|Ga0136449_101136320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1238	Open in IMG/M
3300012189\|Ga0137388_10067301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2972	Open in IMG/M
3300012200\|Ga0137382_11273553	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300012202\|Ga0137363_11045705	All Organisms → cellular organisms → Bacteria → Acidobacteria	694	Open in IMG/M
3300012362\|Ga0137361_11058873	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300012971\|Ga0126369_13343838	Not Available	525	Open in IMG/M
3300014155\|Ga0181524_10126896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1365	Open in IMG/M
3300014156\|Ga0181518_10139868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1308	Open in IMG/M
3300014159\|Ga0181530_10099861	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes → Endogonales → Endogonaceae → Jimgerdemannia → Jimgerdemannia flammicorona	1739	Open in IMG/M
3300014165\|Ga0181523_10733388	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300014165\|Ga0181523_10808448	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300014201\|Ga0181537_11197101	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300014490\|Ga0182010_10040325	All Organisms → cellular organisms → Bacteria → Acidobacteria	2193	Open in IMG/M
3300014493\|Ga0182016_10514448	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300014657\|Ga0181522_10867080	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300017822\|Ga0187802_10418588	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300017925\|Ga0187856_1336026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300017932\|Ga0187814_10131505	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300017933\|Ga0187801_10432710	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300017935\|Ga0187848_10379845	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300017940\|Ga0187853_10398474	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300017940\|Ga0187853_10456242	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300017940\|Ga0187853_10502940	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300017941\|Ga0187850_10420238	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300017955\|Ga0187817_10049425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2589	Open in IMG/M
3300018006\|Ga0187804_10180588	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300018007\|Ga0187805_10536086	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300018014\|Ga0187860_1208691	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300018022\|Ga0187864_10105029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1462	Open in IMG/M
3300018022\|Ga0187864_10289552	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300018023\|Ga0187889_10037142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2709	Open in IMG/M
3300018025\|Ga0187885_10064290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1845	Open in IMG/M
3300018033\|Ga0187867_10284605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	927	Open in IMG/M
3300018035\|Ga0187875_10174188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1195	Open in IMG/M
3300018040\|Ga0187862_10215134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1254	Open in IMG/M
3300018062\|Ga0187784_10278930	Not Available	1358	Open in IMG/M
3300018088\|Ga0187771_10453765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300018090\|Ga0187770_11296123	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300019787\|Ga0182031_1303335	All Organisms → cellular organisms → Bacteria → Acidobacteria	1990	Open in IMG/M
3300019787\|Ga0182031_1559356	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Mucoromycotina → Endogonomycetes → Endogonales → Endogonaceae → Jimgerdemannia → Jimgerdemannia flammicorona	1703	Open in IMG/M
3300021088\|Ga0210404_10570948	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300021432\|Ga0210384_11394886	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300021433\|Ga0210391_11111875	Not Available	613	Open in IMG/M
3300021475\|Ga0210392_10479229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300024347\|Ga0179591_1078981	All Organisms → cellular organisms → Bacteria → Acidobacteria	2245	Open in IMG/M
3300025484\|Ga0208587_1110510	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300025498\|Ga0208819_1097483	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300025576\|Ga0208820_1110837	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300025878\|Ga0209584_10372346	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300026294\|Ga0209839_10206543	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300026320\|Ga0209131_1040946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2662	Open in IMG/M
3300026557\|Ga0179587_10763230	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300026557\|Ga0179587_11130180	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300027063\|Ga0207762_1048034	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300027674\|Ga0209118_1203736	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300027729\|Ga0209248_10184939	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300027729\|Ga0209248_10235246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300027767\|Ga0209655_10217939	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300027862\|Ga0209701_10241614	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300027898\|Ga0209067_10454291	Not Available	723	Open in IMG/M
3300027905\|Ga0209415_10590881	All Organisms → cellular organisms → Bacteria → Acidobacteria	826	Open in IMG/M
3300027905\|Ga0209415_10797222	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300028047\|Ga0209526_10453965	All Organisms → cellular organisms → Bacteria → Acidobacteria	843	Open in IMG/M
3300029817\|Ga0247275_1162956	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300029911\|Ga0311361_11212175	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300029990\|Ga0311336_10952276	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300030054\|Ga0302182_10291237	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031231\|Ga0170824_125120126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300031232\|Ga0302323_100269845	All Organisms → cellular organisms → Bacteria → Acidobacteria	1751	Open in IMG/M
3300031234\|Ga0302325_10381516	All Organisms → cellular organisms → Bacteria → Acidobacteria	2212	Open in IMG/M
3300031250\|Ga0265331_10466178	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300031740\|Ga0307468_101234359	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300031753\|Ga0307477_10883791	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300031962\|Ga0307479_11581330	All Organisms → cellular organisms → Bacteria → Acidobacteria	611	Open in IMG/M
3300031962\|Ga0307479_12147558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300032955\|Ga0335076_11477962	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300033158\|Ga0335077_10412276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1448	Open in IMG/M
3300033405\|Ga0326727_10820510	All Organisms → cellular organisms → Bacteria → Acidobacteria	713	Open in IMG/M
3300033433\|Ga0326726_10754631	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.38%
Aquatic	Environmental → Aquatic	46.79%
Plants	Host-Associated → Plants	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.95%
Freshwater	Environmental → Aquatic → Freshwater	41.28%
Peat	Environmental → Terrestrial → Peat	6.42%
Sediment	Environmental → Aquatic → Sediment	4.59%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%
Peat Moss	Host-Associated → Plants → Peat Moss	0.92%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	41.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.59%
Loam	Environmental → Terrestrial → Soil → Loam	4.59%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.51%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.34%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.42%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.75%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.84%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	10.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.09%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.42%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.75%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.75%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025484	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025498	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_107495701	3300004080	Bog Forest Soil	HFDPVDIVTEVANRADHALELAVAQGTGNIVSQAPQFAASAAVA*
Ga0062387_1012048183	3300004091	Bog Forest Soil	VMRQHFDPVDIVTEVANRADHALEQAVAQGPAKVVTQAPQFAASAAVA*
Ga0062389_1019270112	3300004092	Bog Forest Soil	DIVTEVANRADHALELAVAQGAGKIVSQAPQFAASAAVA*
Ga0062386_1018415441	3300004152	Bog Forest Soil	HFDPVDIVTEVANRADHALELAVAQGVGNIVSQAPQFAASAAVA*
Ga0070761_100440091	3300005591	Soil	MRQHFDPVDIVTEVANRADHALELAVAQGVGHIVSQAPQFAASAAVA*
Ga0070766_100369691	3300005921	Soil	RQHFDPVDIVTEVANRADHALELAVAQGAGKIVSQAPQFAASAAVA*
Ga0075029_1011035861	3300006052	Watersheds	PVDIVTELANRADHALELAVTQGAGAVVSQAPQFAASAAVA*
Ga0075017_1006694772	3300006059	Watersheds	ADIVTEVANRADQAMEQATAQGPGQVVTLAPQFAASAAVA*
Ga0075015_1008667992	3300006102	Watersheds	RQHYDPVDIVTEVVNRADHALDLALVQGPGKIVCQAPQIAAAAVA*
Ga0075021_103178171	3300006354	Watersheds	AQAVMRQHYDPADIVTEVANRADQAMEQAVADGPGKIVRLAPQFATAAAVA*
Ga0075521_105689522	3300006642	Arctic Peat Soil	AQAVMRQHFDPVDIVTEVANRADHAMELALVQGAGAVVSQAPQFSASAAVA*
Ga0073928_110286342	3300006893	Iron-Sulfur Acid Spring	APAVMRQHFDPVDIVTDVANRADHALEQAVAEGAGKIVAQAPQFAAAAAMA*
Ga0099794_104888282	3300007265	Vadose Zone Soil	MRQHFDPVDIVTEVVNRADQALEQAAGQGLGKVVSMAPQFAASAAVA*
Ga0099794_106516001	3300007265	Vadose Zone Soil	RQHFDPVDIVTEVANRADHALEQAVAQGAGKIVAQAPQFAAAAAMA*
Ga0099828_104990263	3300009089	Vadose Zone Soil	VTEVANRADHALEQAVAQGGGTVVSQPPQSAASAAVA*
Ga0116128_11234632	3300009518	Peatland	AQAVMRQHFDPVDIVTEVANRADHALELGVAQGVGKIVTQAPQFAASAAVA*
Ga0116218_12720872	3300009522	Peatlands Soil	VMRQHFDPVDIVTEVANRADHALELAVAQGVGNIVSQAPQFAASAAVA*
Ga0116137_11794191	3300009549	Peatland	VANRADHALELAVAQGAGKIVSQAPQFAASAAVA*
Ga0116102_10276993	3300009632	Peatland	AVMRQHFDPVDIVTEVANRADHALEQAVMQGGGGIVSQAPQFAASAAVA*
Ga0116118_10952382	3300009637	Peatland	DPVDIVTEVANRADHALELAVVQGAGKIVSQAPQFAASAAVA*
Ga0116126_11406531	3300009640	Peatland	FDPVDIVTEVANRADHALELAVAQGAGKIVSQAPQFAASAAVA*
Ga0116126_11968842	3300009640	Peatland	VANRADHALELAVVQGAGKIVSQAPQFAASAAVA*
Ga0116110_11090352	3300009643	Peatland	AQAVMRQHFDPVDIVTEVANRADHALEQAIVQGAGQIVSQAPQFAASAAVA*
Ga0116121_11335411	3300009644	Peatland	QAIEFSAALAQAVMREQFDSVDIVTELVNRADHALDLAIAQGPGKIVCQEPQFVAAAVA*
Ga0116121_12476611	3300009644	Peatland	FDPVDIVTEVANRADHALELAIAQGAGKIVSQAPQFAASAAVA*
Ga0116227_105246341	3300009709	Host-Associated	AVMRQHFDPVDIVTEVVNRADHALELAVAQGLGKIVSQAPQFAAAAAVA*
Ga0074046_104470141	3300010339	Bog Forest Soil	AVMRQHFDPVDIVTEVANRADHALEQAVTQGPGKIVSQAPQFAASAAVA*
Ga0074045_100969433	3300010341	Bog Forest Soil	QHFDPVDIVTEVANRADHALELAMSQGPGSIVSQAPQFAASAAVA*
Ga0074045_110605571	3300010341	Bog Forest Soil	AVIRQHFDPVDIVTEVANRADHALELAVVQGAGKIVSQAPQFAASAAVA*
Ga0136449_1004064712	3300010379	Peatlands Soil	VMRQHFDPVDIVTEVANRADHALEQAVTHGAGKIVSQAPQFAASAAVA*
Ga0136449_1011363201	3300010379	Peatlands Soil	MRQHFDPVDIVTEVANRADHALELAVAQGAGHIVSQVPQFAASAAVA*
Ga0137388_100673011	3300012189	Vadose Zone Soil	HFDPVDIVTEVVNRADQALEQAAGQGLGKVVSMAPQFAASAAVA*
Ga0137382_112735532	3300012200	Vadose Zone Soil	QHFDPVDIVTEVVNRADQALEQAAGQGLGKVVSMTPQFAASAAVA*
Ga0137363_110457052	3300012202	Vadose Zone Soil	MRQHFDTADIVTEVVNRADQALEQAVAQGLGKVVSMAPQFAASAAVA*
Ga0137361_110588731	3300012362	Vadose Zone Soil	IVTEVANRADQALEQAVAQGAGKIVAQAPQFAAAAAMA*
Ga0126369_133438382	3300012971	Tropical Forest Soil	VDIVTEVVNRADLALEQAVGHGLGKIVSLAPQFAASAAVA*
Ga0181524_101268961	3300014155	Bog	TEVANRADHALELAVVQGAGKIVSQAPQFAASAAVA*
Ga0181518_101398683	3300014156	Bog	DPVDIVTEVANRADHALELAMSQGPGSIVSQAPQFAASAAVA*
Ga0181530_100998611	3300014159	Bog	MMQHFDPVDIVTEVANRADHALELAMSQGPGSIVSQAPQFAASAAVA*
Ga0181523_107333883	3300014165	Bog	TEVANRADHALELAMSQGPGSIVSQAPQFAASAAVA*
Ga0181523_108084482	3300014165	Bog	HFDPVDIVTEVANRADHALEQALAQGAGKIVSQSPQFAASAAVA*
Ga0181537_111971011	3300014201	Bog	PVDIVTEVANRADHALEAAVAQGAGNTVSQGPQFAASAAVA*
Ga0182010_100403251	3300014490	Fen	HFDPVDIVTEVANRADHALELAVTQGAGKIAAQAPQFAASVGA*
Ga0182016_105144481	3300014493	Bog	HFDPVDIVTEVVNRADHALELAVAQGVGKIVSQAPQFAASAAVA*
Ga0181522_108670801	3300014657	Bog	MRQHFDPVDIVTEVANRADHALELAVTQGPGKIVSQAPQFAASAAVA*
Ga0187802_104185882	3300017822	Freshwater Sediment	VMLQHFDPVDIVTEVANRADHALELAMAQGAGKIVSQAPQFVSSAAVA
Ga0187856_13360263	3300017925	Peatland	VMRQHFDPVDIVTEVANRADHALELAIAQGAGKIVSQAPQFAASAAVA
Ga0187814_101315052	3300017932	Freshwater Sediment	MRQHFDPVDIVTEVANRADHALEQAVAQGAGKIVSQAPQFAASAAVA
Ga0187801_104327102	3300017933	Freshwater Sediment	EVANRADQAMEQAVAQGPGEVVTLAAQFATASAVA
Ga0187848_103798451	3300017935	Peatland	QHFDPVDIVTEVANRADHALDLAMVEGVGKVVSQAPQLAAAVAVA
Ga0187853_103984741	3300017940	Peatland	IVTEVANRADHALDLAMVEGVGKVVSQAPQLAAAVAVA
Ga0187853_104562421	3300017940	Peatland	RQHFDPVDIVTEVANRADHALEQAVVQGAGKIVSQAPQFAASAAVA
Ga0187853_105029402	3300017940	Peatland	FSAGLAQAVMRQHFDPVDIVTEAANRADHALELAVAQGAGQIVSQAPQFGASAAVA
Ga0187850_104202381	3300017941	Peatland	QHFDPVDIVTEVANRADHALELAMSQGPGSIVSQAPQFAASAAVA
Ga0187817_100494254	3300017955	Freshwater Sediment	DPVDIVTEVANRADHALEQAVAQGAGKIVSQAPQFAASAAVA
Ga0187804_101805881	3300018006	Freshwater Sediment	QHFDPVDIVTEVVNRADLALELAIAQGPGKVVCQAPQIAAAAVA
Ga0187805_105360861	3300018007	Freshwater Sediment	AVMRQHFDPADIVTEVANRADHALELAVAQGPGKIVSQAPQFAASAAVA
Ga0187860_12086912	3300018014	Peatland	DIVTEVANRADHALEQAVMQGGGGIVSQAPQFAASAAVA
Ga0187864_101050292	3300018022	Peatland	VMRQHYDPADIVTEVANRADHALELAVVQGAGKIVSQAPQFAASAAVA
Ga0187864_102895522	3300018022	Peatland	DPVDIVTEVANRADHALELAVVQGAGKIVSQAPQFAASAAVA
Ga0187889_100371424	3300018023	Peatland	RQHFDPVDIVTEVANRADHALELAIAQGAGKIVSQAPQFAASAAVA
Ga0187885_100642904	3300018025	Peatland	DIVTEVANRADHALELAVAQGAGKIVTQAPQFAASAAVA
Ga0187867_102846052	3300018033	Peatland	VDIVTEVANRADHALELAMSQGPGSIVSQAPQFAASAAVA
Ga0187875_101741882	3300018035	Peatland	QHFDPVDIVTEVANRADHALEQAVAQGAGKIVSQAPQFAASAAVA
Ga0187862_102151341	3300018040	Peatland	AQAVMRQHFDPVDIVTEVANRADHALELAVAKGAGEIVSQAPQFAASGAVA
Ga0187784_102789302	3300018062	Tropical Peatland	VTEVVNRADHALELAVAQGPGNTVCQPPQFAASAAVA
Ga0187771_104537652	3300018088	Tropical Peatland	EFSAGLAQAVMRQHFDPVDIVTELANRADHALEQAVAQGAGKIVCQAPQFAASAAVA
Ga0187770_112961232	3300018090	Tropical Peatland	IVTEVVNRADRALELAIAQGPGKVVCQAPQVAAAAVA
Ga0182031_13033353	3300019787	Bog	MRQHFDPVDIVTEVANRADHALDLAMVEGVGKVVSQAPQLAAAVAVA
Ga0182031_15593561	3300019787	Bog	HFDPVDIVTEVANRADHALDLAMVEGVGKVVSQAPQLAAAVAVA
Ga0210404_105709483	3300021088	Soil	DIVTEVANRADHALEQAVAQGAGKIVAQAPQFAAAAAMA
Ga0210384_113948862	3300021432	Soil	DPVDIVTEVANRADQAMELAVAQGIGKIVSQPPQFAAAAAMA
Ga0210391_111118753	3300021433	Soil	EVANRADHALELAVAQGAGKIVSQAPQFAASAAVA
Ga0210392_104792292	3300021475	Soil	AQAVMRQHFDPVDIVTEVANRADHALEEAVVQGPGKIVTQAPQFAAAAAVA
Ga0179591_10789813	3300024347	Vadose Zone Soil	MRQHFDPIDIVTEVVNRADHALELAIMQGPGKIVCEAAQMAAAAVA
Ga0208587_11105102	3300025484	Arctic Peat Soil	RQHFDPVDIVTEVANRADHALEQAVAQGAGTVVSQAPQFATSAAVA
Ga0208819_10974832	3300025498	Peatland	RPHFDPADIVTEVANRADHALELAVAQGAGKIVSQAPQFAASAAVA
Ga0208820_11108372	3300025576	Peatland	VDIVTEVANRADHALELAVVQGAGKIVSQAPQFAASAAVA
Ga0209584_103723462	3300025878	Arctic Peat Soil	PVDIVTEVANRADHAMELALVQGAGAVVSQAPQFSASAAVA
Ga0209839_102065432	3300026294	Soil	DIVTEVANRADHALELAVTQGAGKIVSQAPQFGVSSAAVA
Ga0209131_10409461	3300026320	Grasslands Soil	TEVVNRADQAVEQAAALGPGKVTSLAPQFAATAAVA
Ga0179587_107632301	3300026557	Vadose Zone Soil	VDIVTEVANRADQALEQAVAQGAGKIVAQAPQFAAAAAMA
Ga0179587_111301801	3300026557	Vadose Zone Soil	AQAVMKQHFDPVDIVTEVANRADHAMELAVAQGAGSVVTQTPQFAASAAVA
Ga0207762_10480341	3300027063	Tropical Forest Soil	VLRQHYDPADIVTEVVNRVDLALEQAIVQGGGSIVSLAPQYGAAAAVA
Ga0209118_12037362	3300027674	Forest Soil	VMRQHFDPVDIVTEVANRADHALELAVAQGAGKIVAQAPQFAAAAAMA
Ga0209248_101849392	3300027729	Bog Forest Soil	VDIVTEVANRADHALEQAVVQGAGKIVSQTPQFAAAAVA
Ga0209248_102352462	3300027729	Bog Forest Soil	DIVTEVANRADHALEQAMSQGAGQIVNQAPQFGASAAVA
Ga0209655_102179391	3300027767	Bog Forest Soil	FDPVDIVTEVANRADHALEQAVVQGPGKIVTQAPQFAASAAVA
Ga0209701_102416141	3300027862	Vadose Zone Soil	EVANRADHALEQAVAQGGGTVVSQPPQSAASAAVA
Ga0209067_104542911	3300027898	Watersheds	DIVTEVVNRAEHAMELAIQQGPGKIVCQAPQIAAAAVA
Ga0209415_105908812	3300027905	Peatlands Soil	HFDPVDIVTEVANRADHALELAVAQGVGNIVSQAPQFAASAAVA
Ga0209415_107972222	3300027905	Peatlands Soil	HFDPVDIVTEVANRADHALELAVAQGVGHIVSQAPQFAASAAVA
Ga0209526_104539653	3300028047	Forest Soil	AVMRQHFDPVDIVTEVANRADQALEQAVAQGAGKIVAQAPQFAAAAAMA
Ga0247275_11629562	3300029817	Soil	DPVDIVTEVANRADHALELAVAQGAGKIVTQAPQFAASAAVA
Ga0311361_112121751	3300029911	Bog	DPVDIVTEVANRADHALEQAVTQGAGKIVSQAPQFTASAAVA
Ga0311336_109522761	3300029990	Fen	LLAEVRFPGKDKAVEFSAGIAQAVMRQHFDPVDIVTELANRADHAMELAVAQGAGAVVSQAPQFAASAAVA
Ga0302182_102912372	3300030054	Palsa	MRQHFDPVDIVTEVANRADHALEAAVAQGAGNTVSQGPQFAASAAVA
Ga0170824_1251201261	3300031231	Forest Soil	QAVMRQHFDPVDIVTEVANRADQAMELAVTEGVGKIVSQPPQFAAAAAMA
Ga0302323_1002698453	3300031232	Fen	DPVDIVTEVVNRADLALEQAVAHGAGKLISLAPQFAASAATA
Ga0302325_103815163	3300031234	Palsa	DPVDIVTEVANRADHALELAVAQGAGQIVTQTPQFGASAAVA
Ga0265331_104661781	3300031250	Rhizosphere	MRQHFDPVDIVTEVANRADHALELAVANGTGEIVSQAPQFAAAGAVA
Ga0307468_1012343591	3300031740	Hardwood Forest Soil	IVTEVANRADHAMELAVAQGPGSIVTQAPQFAASAAVA
Ga0307477_108837911	3300031753	Hardwood Forest Soil	HFDPVDIVTEVANRADQAMELAVTEGVGKIVTQPPQFAAAAAMA
Ga0307479_115813301	3300031962	Hardwood Forest Soil	VMRQHFDPVDIVTEVANRADQAMELAVTEGVGKIVSQPPQFAAAAAMA
Ga0307479_121475582	3300031962	Hardwood Forest Soil	AVMRQHFDPVDIVTEVANRADHALEQAVAQGAGKIVAQAPQFAAAAAMA
Ga0335076_114779621	3300032955	Soil	DIVTEVVNRADHAMELAVVQGPGKIVCQAPQIASAAVA
Ga0335077_104122762	3300033158	Soil	MRQHFDPVDIVTEVVNRADHALELAIVQGPGKIVCEAAQVAAAAVA
Ga0326727_108205102	3300033405	Peat Soil	MRQHFDPADIVTEVANRADRALELAVAQGPGKIVTQAPQFAASAAVA
Ga0326726_107546313	3300033433	Peat Soil	EVVNRADQAMDQATAQGLGKIVTLAPQFAASAAVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088994

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences