Metagenome / Metatranscriptome Family F088993

Basic Information
Family ID	F088993
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	48 residues
Representative Sequence	RLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Number of Associated Samples	94
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.59 %
% of genes near scaffold ends (potentially truncated)	88.99 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Most Common Taxonomy
Group	Bacteria (89.908 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.688 % of family members)
Environment Ontology (ENVO)	Unclassified (33.028 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.954 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.96% β-sheet: 34.25% Coil/Unstructured: 54.79%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF12680	SnoaL_2	58.72
PF00058	Ldl_recept_b	5.50
PF00196	GerE	3.67
PF01266	DAO	2.75
PF03099	BPL_LplA_LipB	1.83
PF00150	Cellulase	0.92
PF01957	NfeD	0.92
PF02518	HATPase_c	0.92
PF04978	DUF664	0.92
PF01425	Amidase	0.92
PF04879	Molybdop_Fe4S4	0.92
PF05016	ParE_toxin	0.92
PF03551	PadR	0.92
PF13493	DUF4118	0.92
PF13826	DUF4188	0.92
PF13561	adh_short_C2	0.92
PF07730	HisKA_3	0.92
PF01548	DEDD_Tnp_IS110	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0095	Lipoate-protein ligase A	Coenzyme transport and metabolism [H]	1.83
COG0321	Lipoate-protein ligase B	Coenzyme transport and metabolism [H]	1.83
COG0340	Biotin-protein ligase	Coenzyme transport and metabolism [H]	1.83
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.92
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.92
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.92
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.92
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.92
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.92
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.92
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.92
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.92
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.92
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.91 %
Unclassified	root	N/A	10.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.91 %
Unclassified	root	N/A	10.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.91 %
Unclassified	root	N/A	10.09 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	81.65 %
Unclassified	root	N/A	10.09 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	80.73 %
Unclassified	root	N/A	10.09 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	55.05 %
Unclassified	root	N/A	10.09 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.92 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	42.20 %
Unclassified	root	N/A	10.09 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.83 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.92 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.92 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.92 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	42.20 %
Unclassified	root	N/A	10.09 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.83 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora	42.20 %
Unclassified	root	N/A	10.09 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1.83 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetospora endophytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	42.20 %
Unclassified	root	N/A	10.09 %
Geodermatophilus normandii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus normandii	1.83 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100405880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	1241	Open in IMG/M
3300005187\|Ga0066675_10775467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	723	Open in IMG/M
3300005537\|Ga0070730_10156974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1539	Open in IMG/M
3300005542\|Ga0070732_10259015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300005591\|Ga0070761_10481660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	764	Open in IMG/M
3300006354\|Ga0075021_10454491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	808	Open in IMG/M
3300009012\|Ga0066710_102351431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	774	Open in IMG/M
3300009520\|Ga0116214_1368195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	558	Open in IMG/M
3300009521\|Ga0116222_1139570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1043	Open in IMG/M
3300009683\|Ga0116224_10003458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8799	Open in IMG/M
3300009698\|Ga0116216_10231396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	1131	Open in IMG/M
3300009700\|Ga0116217_10835023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
3300010043\|Ga0126380_10613008	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300010162\|Ga0131853_10732072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300010323\|Ga0134086_10322669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	604	Open in IMG/M
3300010335\|Ga0134063_10732571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	513	Open in IMG/M
3300010341\|Ga0074045_10382741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	914	Open in IMG/M
3300010358\|Ga0126370_10552972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus normandii	984	Open in IMG/M
3300010360\|Ga0126372_12545637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	563	Open in IMG/M
3300010398\|Ga0126383_11747814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	711	Open in IMG/M
3300010867\|Ga0126347_1054366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	997	Open in IMG/M
3300012354\|Ga0137366_10930401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	610	Open in IMG/M
3300014200\|Ga0181526_10622434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	682	Open in IMG/M
3300014493\|Ga0182016_10760834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	541	Open in IMG/M
3300016341\|Ga0182035_10172268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1686	Open in IMG/M
3300016371\|Ga0182034_10926899	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300016422\|Ga0182039_11601982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	594	Open in IMG/M
3300017924\|Ga0187820_1210630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	610	Open in IMG/M
3300017924\|Ga0187820_1227676	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300017924\|Ga0187820_1308435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	522	Open in IMG/M
3300017926\|Ga0187807_1031201	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300017933\|Ga0187801_10360587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	599	Open in IMG/M
3300017934\|Ga0187803_10253614	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300017937\|Ga0187809_10276124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	614	Open in IMG/M
3300017937\|Ga0187809_10393048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	527	Open in IMG/M
3300017959\|Ga0187779_10390486	All Organisms → cellular organisms → Bacteria → Terrabacteria group	906	Open in IMG/M
3300017959\|Ga0187779_11171455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	539	Open in IMG/M
3300017973\|Ga0187780_10844389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	664	Open in IMG/M
3300017974\|Ga0187777_10266642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1165	Open in IMG/M
3300017974\|Ga0187777_11302093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	534	Open in IMG/M
3300018001\|Ga0187815_10091587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1280	Open in IMG/M
3300018034\|Ga0187863_10767985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	546	Open in IMG/M
3300018047\|Ga0187859_10195024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	1080	Open in IMG/M
3300018058\|Ga0187766_10824196	Not Available	649	Open in IMG/M
3300018062\|Ga0187784_10340884	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300018064\|Ga0187773_11201865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	510	Open in IMG/M
3300018085\|Ga0187772_10065559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2269	Open in IMG/M
3300018090\|Ga0187770_10992160	Not Available	675	Open in IMG/M
3300018468\|Ga0066662_12026462	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300020150\|Ga0187768_1129004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	581	Open in IMG/M
3300021420\|Ga0210394_10355867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	1287	Open in IMG/M
3300021474\|Ga0210390_10608809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	915	Open in IMG/M
3300021860\|Ga0213851_1382209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300024288\|Ga0179589_10235552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	810	Open in IMG/M
3300027076\|Ga0208860_1009195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	902	Open in IMG/M
3300027110\|Ga0208488_1017634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1399	Open in IMG/M
3300027497\|Ga0208199_1119334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	540	Open in IMG/M
3300027857\|Ga0209166_10240968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	963	Open in IMG/M
3300028789\|Ga0302232_10309165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	780	Open in IMG/M
3300028800\|Ga0265338_11027206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	557	Open in IMG/M
3300029997\|Ga0302302_1269310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	622	Open in IMG/M
3300030739\|Ga0302311_10293214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	1184	Open in IMG/M
3300031543\|Ga0318516_10106821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1586	Open in IMG/M
3300031543\|Ga0318516_10842896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	517	Open in IMG/M
3300031561\|Ga0318528_10304255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	856	Open in IMG/M
3300031564\|Ga0318573_10678674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	554	Open in IMG/M
3300031680\|Ga0318574_10182733	Not Available	1201	Open in IMG/M
3300031682\|Ga0318560_10250478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	951	Open in IMG/M
3300031715\|Ga0307476_11435354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	502	Open in IMG/M
3300031744\|Ga0306918_11013817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	645	Open in IMG/M
3300031744\|Ga0306918_11046173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300031751\|Ga0318494_10622559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	631	Open in IMG/M
3300031771\|Ga0318546_11146770	Not Available	546	Open in IMG/M
3300031781\|Ga0318547_10726648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	618	Open in IMG/M
3300031782\|Ga0318552_10181937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1061	Open in IMG/M
3300031799\|Ga0318565_10323529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	749	Open in IMG/M
3300031821\|Ga0318567_10751321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	553	Open in IMG/M
3300031835\|Ga0318517_10477620	Not Available	562	Open in IMG/M
3300031845\|Ga0318511_10316602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	707	Open in IMG/M
3300031879\|Ga0306919_10821731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	714	Open in IMG/M
3300031879\|Ga0306919_11251064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563	Open in IMG/M
3300031879\|Ga0306919_11501865	Not Available	507	Open in IMG/M
3300031894\|Ga0318522_10256569	Not Available	663	Open in IMG/M
3300031894\|Ga0318522_10280090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300031894\|Ga0318522_10291298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	619	Open in IMG/M
3300031896\|Ga0318551_10387660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	794	Open in IMG/M
3300031896\|Ga0318551_10820462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	541	Open in IMG/M
3300031910\|Ga0306923_11073921	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300032001\|Ga0306922_11890125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	585	Open in IMG/M
3300032010\|Ga0318569_10289019	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300032025\|Ga0318507_10196412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	870	Open in IMG/M
3300032059\|Ga0318533_10438843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	955	Open in IMG/M
3300032060\|Ga0318505_10215835	Not Available	900	Open in IMG/M
3300032066\|Ga0318514_10497166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	649	Open in IMG/M
3300032089\|Ga0318525_10503514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	620	Open in IMG/M
3300032090\|Ga0318518_10305230	Not Available	817	Open in IMG/M
3300032782\|Ga0335082_10903308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus normandii	746	Open in IMG/M
3300032783\|Ga0335079_11274736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300032783\|Ga0335079_11380432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
3300032828\|Ga0335080_12098874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	545	Open in IMG/M
3300032892\|Ga0335081_11101679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	915	Open in IMG/M
3300032892\|Ga0335081_12433955	Not Available	543	Open in IMG/M
3300032898\|Ga0335072_10912986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	820	Open in IMG/M
3300032954\|Ga0335083_10415064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1146	Open in IMG/M
3300033134\|Ga0335073_10389788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	1634	Open in IMG/M
3300033158\|Ga0335077_10015714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9465	Open in IMG/M
3300033158\|Ga0335077_10893775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora endophytica	896	Open in IMG/M
3300033803\|Ga0314862_0162413	Not Available	545	Open in IMG/M
3300033805\|Ga0314864_0197438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.32%
Aquatic	Environmental → Aquatic	12.84%
Arthropoda	Host-Associated → Arthropoda	0.92%
Plants	Host-Associated → Plants	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.57%
Freshwater	Environmental → Aquatic → Freshwater	11.93%
Peat	Environmental → Terrestrial → Peat	2.75%
Sediment	Environmental → Aquatic → Sediment	0.92%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.05%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	23.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.01%
Loam	Environmental → Terrestrial → Soil → Loam	3.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	22.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.51%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.69%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.09%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	10.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.26%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.83%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029997	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088993

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1004058804	3300002245	Forest Soil	AATRPDGRSMDGPQLVLVTLDGGRVRSIDQFVGDPAAVAAFWA*
Ga0066675_107754671	3300005187	Soil	SVLTDGQGHVAVPVRLSANRPDGRTMDGPQVVLVTVDDGRVRAIEQFVGDPAAVAAFWA*
Ga0070730_101569743	3300005537	Surface Soil	PDGRSMDGPQLVLFTIQDGRVRSIEQFVGDPGAVAAFWA*
Ga0070732_102590153	3300005542	Surface Soil	VGVLVRLGATRPDGRSMDGPQIVLFTLDGGRVRSIDQFVGDPAAVAAFWA*
Ga0070761_104816601	3300005591	Soil	SVMADGAGHVAVPVRLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA*
Ga0075021_104544912	3300006354	Watersheds	PDGRSMDGPQLVLVTLDGGRVRGIDQFVGDPAAVAAFWA*
Ga0066710_1023514311	3300009012	Grasslands Soil	PQSVLADGQGHVAVPVRLSASRPDGRTMDGPQVVLVTVDDGRVRAIEQFVGDPAAVAAFW
Ga0116214_13681951	3300009520	Peatlands Soil	DGQGRVGVLVRLSAARPDGRSMDGPQLVLFTLDGGRVRSIDQFVGDPAAVAAFWA*
Ga0116222_11395703	3300009521	Peatlands Soil	TCDGQGRVGVLVRLSAARPDGRSMDGPQLVLFTLDGGRVRSIDQFVGDPAAVAAFWA*
Ga0116224_100034581	3300009683	Peatlands Soil	VLAQASSTRPDGRSFDNPQIVLFTLDGGRVRSIDQFVGDPVAVAAFWA*
Ga0116216_102313962	3300009698	Peatlands Soil	MADGAGHVAVLVRLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA*
Ga0116217_108350231	3300009700	Peatlands Soil	LRAVPQSFMADGQGRVGVLVRLSATRPDGRSMDGLQLVLVTLDGGRVRSIDQFVGDPAAVAAFWA*
Ga0126380_106130083	3300010043	Tropical Forest Soil	RAEPQSVMADGGGHVAVLVRLSASRSDGRTMDGPQVVLLTVEGGRVRTIEQFVGDPAAVAAFWA*
Ga0131853_107320723	3300010162	Termite Gut	MADGQGHVAVLVRLTASRPDGRTMDGPQAVLVTVEGGRVRAIEQFVGDPAAVAAFWA*
Ga0134086_103226692	3300010323	Grasslands Soil	MDGPQVVLVTVDDERVRAIEQFVGDPAAVAAFWA*
Ga0134063_107325711	3300010335	Grasslands Soil	NRPDGRTMDGPQVVLVTVDDGRVRAIEQFVGDPAAVAAFWA*
Ga0074045_103827412	3300010341	Bog Forest Soil	LSATRPDRRSMDGPQIVLFTLDGGLVRSIDQFVGDPAAVATFWA*
Ga0126370_105529722	3300010358	Tropical Forest Soil	SASRPDGRAMDGPQVVLVTVDGGRVRAVEQFVGDPAAVAAFWA*
Ga0126372_125456371	3300010360	Tropical Forest Soil	PDGRAMDGPQVVLVTVQGGRVRAIEQFVGDPAAVAAFWA*
Ga0126383_117478142	3300010398	Tropical Forest Soil	PRSVMADGAGHVAVLVRLSASRPDGRAMDGPQVVLVTVQGSRVRAIEQFVGDPAAVATFWA*
Ga0126347_10543661	3300010867	Boreal Forest Soil	MDGPQLVLVTLDGGRVRSIDQFVGDPAAVAAFWA*
Ga0137366_109304011	3300012354	Vadose Zone Soil	SRPDGRTMDGPQVVLVTVDDGRVRAIEQFIGDPAAVAAFWA*
Ga0181526_106224341	3300014200	Bog	VRLSATRPDGRLMDGLQIVLFTLDGGRVRSIDQFVGDTAAVATFWA*
Ga0182016_107608342	3300014493	Bog	AVRVRLSASRPDGRTVDGPQVVLVTVEVGRVRAIEQFVGDPAAVAAFWA*
Ga0182035_101722682	3300016341	Soil	VAGVVAGHVAVRVRLSARRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0182034_109268993	3300016371	Soil	GREMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0182039_116019821	3300016422	Soil	PDGRTIDDSQVLVVTVDGGRVRAFEQFVGDPPAVAAFWA
Ga0187820_12106302	3300017924	Freshwater Sediment	PQSVMADGQGHVAVQVRLKASRPDGRIMDGPQVVVVTVDGGRVRAIEQFVGDPPAVAAFW
Ga0187820_12276761	3300017924	Freshwater Sediment	PDGRTMDGPQVVLVTVDGGRVRAIEQFVGDPAAVASFWA
Ga0187820_13084352	3300017924	Freshwater Sediment	VLVRLTASRPDGRAMDWPQVVLVTVDGGRVRAIEQFVGDPAAVAAFWA
Ga0187807_10312013	3300017926	Freshwater Sediment	LADGAGRICVLVRLSATRPDGRAMDGPQLVLVTLDGGRVRSIDQFVGDPAAVAAFWA
Ga0187801_103605872	3300017933	Freshwater Sediment	GRVGVLVRLSAARPDGRSMDGPQLVLFTLDGGRVRSIDQFVGDPAAVAAFWA
Ga0187803_102536143	3300017934	Freshwater Sediment	ASRPDGRTMDGPQVVVVTVDGGRVRAIEQFVGDPPAVAAFWA
Ga0187809_102761242	3300017937	Freshwater Sediment	ADGQGRVCVLVRLSATRADGRSMEGPQLVLVTLDGGRVRSIDQFVGDPAAVAAFWA
Ga0187809_103930482	3300017937	Freshwater Sediment	RLSATRADGRSMEGPQLVLVTLDGGRVCRIDQFVGDPAAVAAFWA
Ga0187779_103904861	3300017959	Tropical Peatland	ASRPDGRTMDGPQVLLVTVAGGRVRAIEQFVGDPLAVAAFWA
Ga0187779_111714551	3300017959	Tropical Peatland	TMDGPQVVLVTVDGGRVRAVEQFIGDPAAVAVFWA
Ga0187780_108443892	3300017973	Tropical Peatland	RPDGRSMDGPQLVLVTLDGGRVRGIDQFVGDPAAVAGFWA
Ga0187777_102666423	3300017974	Tropical Peatland	SASRPDGRTMDGPQVVLVTVDGGRVRAIDQFVGDPAAVAAFWA
Ga0187777_113020932	3300017974	Tropical Peatland	HVAVLVRLRASRPDGRTMDGPQIVLVTVEGGRVRAIEQFVGDPAAVAVFWA
Ga0187815_100915871	3300018001	Freshwater Sediment	DGRTMDGPQVVLVTVEDGRVRAIEQFVGDPAAVAAFWA
Ga0187863_107679852	3300018034	Peatland	SAVRPDGRTMDGPQVVLVTLAGGRVRAIEQFVGDPAAVAAFWA
Ga0187859_101950241	3300018047	Peatland	GRTMDGPQVVLVTVAGGRVRAIEQFVGDPAAVAAFWA
Ga0187766_108241961	3300018058	Tropical Peatland	GHVAVPVRLSASRPDGRTMDGPQVVLATVDGGRVRAIDQFVGDPAAEKSD
Ga0187784_103408842	3300018062	Tropical Peatland	MADGQRHVAVLVRLRASRPDGRTMDGPQVVLVTVEDGRVRAIEQFAGDPAAVAAFWA
Ga0187773_112018652	3300018064	Tropical Peatland	SRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0187772_100655594	3300018085	Tropical Peatland	PDGRNMDGPQLVLFTIHGGRVHSIDQFVGDPAAVAAFWA
Ga0187770_109921602	3300018090	Tropical Peatland	MVDGQGRVCVLVRLSATRPDGRNMDGPQLVLFTIHGGRVHSIDQFVGDPAAVAAFWA
Ga0066662_120264622	3300018468	Grasslands Soil	SMEGPQIVLFTLDGGRVRSIDQFVGDPAAVATFWA
Ga0187768_11290041	3300020150	Tropical Peatland	LSFMADGQGRVCVLVRLSATRPDGRSMDGPQLVLVTLDGGSVRSIDQFVGDPAAVAAFWA
Ga0210394_103558671	3300021420	Soil	AVLARLSASRPDGRTMDGPQVVLVAVEGGRVRAIEQFVGDPAAVAAFWA
Ga0210390_106088091	3300021474	Soil	VPVRLRASRPDGRTMDGPQVVLVTVDDHRVRAIEQFVGDPAAVAAFWA
Ga0213851_13822092	3300021860	Watersheds	PDGRSMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0179589_102355523	3300024288	Vadose Zone Soil	TMDGPQVVLVTVQDGRVRAIEQFVGDPAAVAAFWA
Ga0208860_10091952	3300027076	Forest Soil	RPDGRSMDGPQIVLFTLDGGRVRSIDQFVGDPAAVAAFWA
Ga0208488_10176341	3300027110	Forest Soil	AVRVRLSASRPDGRAMDGPQVVLVTVERGRVHAIEQFVGDPAAVAAFWA
Ga0208199_11193342	3300027497	Peatlands Soil	GVLVRLSAARPDGRSMDGPQLVLFTLDGGRVRSIDQFVGDPAAVAAFWA
Ga0209166_102409682	3300027857	Surface Soil	PDGRSMDGPQLVLFTIQDGRVRSIEQFVGDPGAVAAFWA
Ga0302232_103091652	3300028789	Palsa	GHVAVLVRLSASRPDGRTVDGPQVVLVTVEVGRVRAIEQFVGDPAAVAAFWA
Ga0265338_110272062	3300028800	Rhizosphere	DGRSMDGPQVVLVTVDDGRVRAIEQFVGEPAAVAAFWA
Ga0302302_12693101	3300029997	Palsa	DRRTMDGPQVVLVTVAGGRVRAIEQFVGDPAAVAAFWA
Ga0302311_102932143	3300030739	Palsa	SASRPDRRTMDGPQVVLVTVAGGRVRAIEQFVGDPAAVAAFWA
Ga0318516_101068211	3300031543	Soil	LWLIADGQGHVAVLVRLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0318516_108428962	3300031543	Soil	DGRTMDGPQVVLVTVERGRVRAIEQFVGDPAAVAAFWA
Ga0318528_103042552	3300031561	Soil	LSASRPDGRTMDGPQVVLVTVEDGRVRAIGQFVGDPAAVAAFWA
Ga0318573_106786741	3300031564	Soil	HNDHRLSASRPDGRTVDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0318574_101827333	3300031680	Soil	SRPDGRTMDGPQVVLATVDGGRVRAIEQFVGDPAAVAAFWA
Ga0318560_102504782	3300031682	Soil	MLHAEPRSVMADGQGHVAVLVRLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0307476_114353542	3300031715	Hardwood Forest Soil	LSASRPDGRTMDGPQVVLVTVEGSRVRAIEQFVGDPAAVAAFWA
Ga0306918_110138171	3300031744	Soil	GRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0306918_110461731	3300031744	Soil	LSASRPDGREMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0318494_106225592	3300031751	Soil	AEPQSVMADGQGHVAVPVRLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0318546_111467701	3300031771	Soil	PDGRTMGGPQVVLVTVEGGRVHAIEQFVGDPAAVAAFWA
Ga0318547_107266482	3300031781	Soil	PDGRSMDGPQLVLLAVADGRVRSIDQFVGDPAAVAAFWA
Ga0318552_101819373	3300031782	Soil	VLVRLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0318565_103235291	3300031799	Soil	PDGRTMDGPQVVLATVDGGRVRAIDQFVGDPAAVAAFWA
Ga0318567_107513211	3300031821	Soil	TWHHHNDDRLSASRPDGRTVDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0318517_104776202	3300031835	Soil	RLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0318511_103166023	3300031845	Soil	VAVLVRLSASRPDGREMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0306919_108217311	3300031879	Soil	SRPDGREMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0306919_112510642	3300031879	Soil	PQSVMADGQGHVAVLVRLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFW
Ga0306919_115018651	3300031879	Soil	ARRPDGRTMDGPQVVLVTVEGGRVHAIEQFVGDPAAVAAFWA
Ga0318522_102565692	3300031894	Soil	AVLVRLRASRPDGRTMDGRQVVLVTVQDGRVRAIEQFVGDPAAVAAFWA
Ga0318522_102800902	3300031894	Soil	GRGMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0318522_102912981	3300031894	Soil	MADSEGHVTVLVRLSATRPDGRSMDGPQLVLLAVADGRVRSIDQFVGDPAAVAAFWA
Ga0318551_103876601	3300031896	Soil	DGEGRVCVLVRLTAARPDGRTMDGPQLLLVTVDGGRVRGIDQFVGEPAAVAAFWA
Ga0318551_108204621	3300031896	Soil	AEPQSVMADAEGHVAVLVRLRASRPDGRTMDGPQVVLVTVDGGRVRAIEQFVGDPAAVAAFWA
Ga0306923_110739211	3300031910	Soil	GEGHVAVLVRLSASRPDGREMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0306922_118901251	3300032001	Soil	LVRLSGSRPDGRTVDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0318569_102890191	3300032010	Soil	GMDGPQVVLVTVEGGRVRAIEQFVGEPAAVAAFWA
Ga0318507_101964123	3300032025	Soil	EGHVTVLVRLSATRPDGRSMDGPQLVLLAVADGRVRSIDQFVGDPAAVAAFWA
Ga0318533_104388431	3300032059	Soil	RSMDGPQLVLLAVADGRVRSIDQFVGDPAAVAAFWA
Ga0318505_102158351	3300032060	Soil	LSARRPDGRTMDGPQVVLVTVEGGRVHAIEQFVGDPAAVAAFWA
Ga0318514_104971662	3300032066	Soil	MTDGEGRVCVLVRLTAARPDGRTMDGPQLLLVTVDGGRVRGIDQFVGEPAAVAAFWA
Ga0318525_105035141	3300032089	Soil	LSGSRPDGRTVDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0318518_103052301	3300032090	Soil	VGETGGVAGVVAGHVAVRVRLSARRPDGRTMDGPQVVLVTVEGGRVHAIEQFVGDPAAVAAFWA
Ga0335082_109033082	3300032782	Soil	LVRLSASRPDGRTMDGPQVLLVTVEGGRVRAIEQFVGDPPAVAAFWA
Ga0335079_112747361	3300032783	Soil	AEPQSVMADGDGHVAVLVRFSASCPDGRAIDGPQVVLVTVEGGRVRAIDKFVGDPAAVAAFWA
Ga0335079_113804321	3300032783	Soil	VPVRLSASRPDGRSMDGPQVVLATVEDGRVRAIEQFVGEPAAVAAFWA
Ga0335080_120988741	3300032828	Soil	AVLVRLSASRPDGRTMDGPQVLLVTVEDGRVRAIEQFVGDPAAVATFWA
Ga0335081_111016791	3300032892	Soil	SVMADGAGHVAVPVRLSASRPDGRSMDGPQVVLATVEDGRVRAIEQFVGEPAAVAAFWA
Ga0335081_124339552	3300032892	Soil	LSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0335072_109129863	3300032898	Soil	LRAEPQSVMADGDGHVAVLVRLSASRPDGRTMDGPQVVLVTVQGGRVRSIEQFVGDPAAVAAFWA
Ga0335083_104150641	3300032954	Soil	AMDGPQLVLFTLDSCRVRSIDQFVGDPAAVAAFWA
Ga0335073_103897881	3300033134	Soil	GSEGRVAVLVRLSASRPDGRTMDGPQVVLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0335077_1001571412	3300033158	Soil	MADGDGHVAVLVRFSASCPDGRAIDGPQVVLVTVEGGRVRAIDKFVGDPAAVAAFWA
Ga0335077_108937751	3300033158	Soil	LVRLSASRPDGRTMDGPQVLLVTVEGGRVRAIEQFVGDPAAVAAFWA
Ga0314862_0162413_3_146	3300033803	Peatland	LVRFSASRPDGRTIGCPQVLIVTVESGRVRAIEQFVGDPAAVAAFWA
Ga0314864_0197438_342_515	3300033805	Peatland	MADGQGHVAVLIRLSATRPDGRAMDGPQVVIVTVEGGRVRAIEQFVGDPAAVAAFWA

Hidden Markov Model


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