Metagenome / Metatranscriptome Family F088970

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088970
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	55 residues
Representative Sequence	RRSFRLPLTGAGQAVATRVLAAIADLERDALSRLDATQLAGYHAVVTALQEAC
Number of Associated Samples	102
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	92.66 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.083 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (22.936 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.872 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 49.38% β-sheet: 0.00% Coil/Unstructured: 50.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF12680	SnoaL_2	3.67
PF12535	Nudix_N	2.75
PF13193	AMP-binding_C	2.75
PF17032	zinc_ribbon_15	1.83
PF00069	Pkinase	1.83
PF08044	DUF1707	0.92
PF13671	AAA_33	0.92
PF04493	Endonuclease_5	0.92
PF00376	MerR	0.92
PF00701	DHDPS	0.92
PF00872	Transposase_mut	0.92
PF00797	Acetyltransf_2	0.92
PF13358	DDE_3	0.92
PF13699	DUF4157	0.92
PF01243	Putative_PNPOx	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.34
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.83
COG1515	Deoxyinosine 3'-endonuclease (endonuclease V)	Replication, recombination and repair [L]	0.92
COG2162	Arylamine N-acetyltransferase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	96.33 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	96.33 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	45.87 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	5.50 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	4.59 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	5.50 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	4.59 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	4.59 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.75 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Frankia inefficax	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia inefficax	2.75 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.75 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.92 %
Unclassified	root	N/A	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101653697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300004114\|Ga0062593_100408796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1217	Open in IMG/M
3300004635\|Ga0062388_102419524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300005186\|Ga0066676_10682680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia inefficax	699	Open in IMG/M
3300005434\|Ga0070709_11204450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	609	Open in IMG/M
3300005435\|Ga0070714_100895528	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300005436\|Ga0070713_100389088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1300	Open in IMG/M
3300005446\|Ga0066686_10349130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia inefficax	1009	Open in IMG/M
3300005471\|Ga0070698_101973898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	537	Open in IMG/M
3300005518\|Ga0070699_101149828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	712	Open in IMG/M
3300005537\|Ga0070730_10687596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	649	Open in IMG/M
3300005546\|Ga0070696_101768504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia inefficax	534	Open in IMG/M
3300005610\|Ga0070763_10110337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1398	Open in IMG/M
3300006102\|Ga0075015_100421521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300006358\|Ga0068871_100287224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1440	Open in IMG/M
3300006358\|Ga0068871_100849396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	844	Open in IMG/M
3300006755\|Ga0079222_10484948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	899	Open in IMG/M
3300006903\|Ga0075426_11144518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300006969\|Ga0075419_10059932	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M
3300009012\|Ga0066710_103310575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300009520\|Ga0116214_1129979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	933	Open in IMG/M
3300009623\|Ga0116133_1179421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	563	Open in IMG/M
3300009665\|Ga0116135_1314542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300009672\|Ga0116215_1179010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	937	Open in IMG/M
3300009683\|Ga0116224_10408991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300009839\|Ga0116223_10204037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1207	Open in IMG/M
3300010037\|Ga0126304_10196763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1317	Open in IMG/M
3300010048\|Ga0126373_10605078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1149	Open in IMG/M
3300010152\|Ga0126318_10672707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300010379\|Ga0136449_101109386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1258	Open in IMG/M
3300010876\|Ga0126361_10342304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2413	Open in IMG/M
3300011003\|Ga0138514_100028720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1043	Open in IMG/M
3300012199\|Ga0137383_11285856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300012202\|Ga0137363_10266165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1397	Open in IMG/M
3300012210\|Ga0137378_11143691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	694	Open in IMG/M
3300012211\|Ga0137377_11871363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300012351\|Ga0137386_11100035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300012357\|Ga0137384_10078418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2744	Open in IMG/M
3300012925\|Ga0137419_11493290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	572	Open in IMG/M
3300012971\|Ga0126369_12167848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	643	Open in IMG/M
3300014495\|Ga0182015_10602293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	697	Open in IMG/M
3300014745\|Ga0157377_10959013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300016270\|Ga0182036_10828047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	755	Open in IMG/M
3300016319\|Ga0182033_11824606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300016422\|Ga0182039_11400990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	635	Open in IMG/M
3300017933\|Ga0187801_10463795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300017970\|Ga0187783_10583928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	809	Open in IMG/M
3300018037\|Ga0187883_10712005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300018058\|Ga0187766_10615431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300018433\|Ga0066667_10677689	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300020081\|Ga0206354_11719303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300020581\|Ga0210399_10474339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041	Open in IMG/M
3300020582\|Ga0210395_10046944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3162	Open in IMG/M
3300021180\|Ga0210396_10122556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2345	Open in IMG/M
3300021404\|Ga0210389_11354396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300021407\|Ga0210383_10688680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	879	Open in IMG/M
3300021474\|Ga0210390_11409864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	554	Open in IMG/M
3300024325\|Ga0247678_1044690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	711	Open in IMG/M
3300025321\|Ga0207656_10370185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	717	Open in IMG/M
3300025906\|Ga0207699_11245332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300025981\|Ga0207640_10361054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1170	Open in IMG/M
3300026324\|Ga0209470_1252599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	706	Open in IMG/M
3300027590\|Ga0209116_1077441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	727	Open in IMG/M
3300027854\|Ga0209517_10437300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300027855\|Ga0209693_10298877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	785	Open in IMG/M
3300027855\|Ga0209693_10308480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	771	Open in IMG/M
3300027905\|Ga0209415_10340524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1257	Open in IMG/M
3300028718\|Ga0307307_10096655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	898	Open in IMG/M
3300028759\|Ga0302224_10214308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	764	Open in IMG/M
3300028773\|Ga0302234_10047666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1945	Open in IMG/M
3300028799\|Ga0307284_10065537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1306	Open in IMG/M
3300029999\|Ga0311339_10640561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1051	Open in IMG/M
3300030057\|Ga0302176_10424023	Not Available	537	Open in IMG/M
3300030618\|Ga0311354_10047807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5001	Open in IMG/M
3300030618\|Ga0311354_10552768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1127	Open in IMG/M
3300030659\|Ga0316363_10093481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1345	Open in IMG/M
3300030677\|Ga0302317_10377367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300031226\|Ga0307497_10451911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300031573\|Ga0310915_11012376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300031713\|Ga0318496_10331342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	841	Open in IMG/M
3300031736\|Ga0318501_10287889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	875	Open in IMG/M
3300031751\|Ga0318494_10137774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1369	Open in IMG/M
3300031765\|Ga0318554_10596643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300031765\|Ga0318554_10707239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300031769\|Ga0318526_10394897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300031770\|Ga0318521_10675280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300031781\|Ga0318547_10985818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300031831\|Ga0318564_10336729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	664	Open in IMG/M
3300031833\|Ga0310917_10666988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	705	Open in IMG/M
3300031846\|Ga0318512_10404060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	686	Open in IMG/M
3300031912\|Ga0306921_11137338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300031938\|Ga0308175_102486458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300031941\|Ga0310912_11271834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300031954\|Ga0306926_10689002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1240	Open in IMG/M
3300031981\|Ga0318531_10147841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1052	Open in IMG/M
3300031996\|Ga0308176_10331262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1495	Open in IMG/M
3300032001\|Ga0306922_10347461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1591	Open in IMG/M
3300032009\|Ga0318563_10296865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	874	Open in IMG/M
3300032025\|Ga0318507_10167648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	943	Open in IMG/M
3300032060\|Ga0318505_10541826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300032089\|Ga0318525_10681492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300032261\|Ga0306920_101670837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	903	Open in IMG/M
3300032828\|Ga0335080_11298308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	727	Open in IMG/M
3300032828\|Ga0335080_11461990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	677	Open in IMG/M
3300032893\|Ga0335069_10248953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2138	Open in IMG/M
3300032954\|Ga0335083_10671065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	845	Open in IMG/M
3300032954\|Ga0335083_11400550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	534	Open in IMG/M
3300032955\|Ga0335076_10037386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	4857	Open in IMG/M
3300032955\|Ga0335076_10185140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1988	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.58%
Host-Associated	Host-Associated	6.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.16%
Aquatic	Environmental → Aquatic	6.42%
Plants	Host-Associated → Plants	6.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.82%
Peat	Environmental → Terrestrial → Peat	6.42%
Freshwater	Environmental → Aquatic → Freshwater	5.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Roots	Host-Associated → Plants → Roots	1.83%
Sediment	Environmental → Aquatic → Sediment	0.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.63%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.02%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.42%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1016536971	3300002245	Forest Soil	DRRSFRLPLTETGQAVADRVLAAVADLERDALARLPATQIAGYHAVITALQEACS*
Ga0062593_1004087961	3300004114	Soil	ELDPADRRSFRLPLTETGQAVAARVRAAIADLERDTLSRLDATQLAGYHAVVTALQEAC*
Ga0062388_1024195241	3300004635	Bog Forest Soil	RLPLTEAGQAVATRVLTAIADLERDALSRLSAAQIAGYHAVITALQEAC*
Ga0066676_106826801	3300005186	Soil	RELDPADRRSFRLPLTGAGQAVSARVLAAIADLERDALSRLDATQLAGYHAVVAALQEAC
Ga0070709_112044502	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	YLARELDPADRRSFRLPLTEAGQAVAARVLAAIADLERDALSRLDATQLAGYHAVITALQEAC*
Ga0070714_1008955281	3300005435	Agricultural Soil	SFRLPLTETGQAVAARVRAAIADLERDALSRLDATQLAGYHAVVTALQEAC*
Ga0070713_1003890881	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	DRRSFRLPLTGAGQAVAARVLAAVADLERDALSRLDATQLAGYHAVVAALQEAC*
Ga0066686_103491302	3300005446	Soil	RRSFRLPLTGAGQAVATRVLAAIADLERDALSRLDATQLAGYHAVVTALQEAC*
Ga0070698_1019738981	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RELDPADRRSFRLPLTESGQTVAARVLAAVADLEHKALSRLDATQLAGYRAVITALQEAC
Ga0070699_1011498282	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ADRRSFRLPLTEAGQAVASRVLTAIADLERDALSRLSAAQIAGYHAVITALQEVG*
Ga0070730_106875962	3300005537	Surface Soil	DRRSFRLPLTEAGKAAATRVLTAIADLERDALSRLSAIQIAGYHAVITALQEVS*
Ga0070696_1017685041	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	PLTGAGQAVAARVLAAIADLERDALSRLDATQLAGYHAVVAALQEAC*
Ga0070763_101103374	3300005610	Soil	DRRSFRLPLTEAGQAVAARVLAAVADLEREAMAGLSATQVAGFHSVLTALQEAC*
Ga0075015_1004215211	3300006102	Watersheds	DRRSFRLPLTEAGRAVASQVLTAIADLERNALSGLPATQIAGYHAVIAALQEAC*
Ga0068871_1002872243	3300006358	Miscanthus Rhizosphere	LPLTETGQAVAARVRAAIADLERDALSGLDATQLAGYHAVVTALQEAC*
Ga0068871_1008493963	3300006358	Miscanthus Rhizosphere	VDPADRRSFRLPLTDRGREGAARARAAITDLERTVLSRLDAAQLAGYHAVISALEEAC*
Ga0079222_104849482	3300006755	Agricultural Soil	ADRRSFRLPLTGAGQAVAARVLAAIADLERDALSRLDAAQLAGYHAVVAALQEAC*
Ga0075426_111445182	3300006903	Populus Rhizosphere	PADRRSFRLPLTGAGQAVAARVLAAIADLERDALSRLDAAQLAGYHAVVAALQEAC*
Ga0075419_100599321	3300006969	Populus Rhizosphere	RELDAFDRRSFRLALTARGRTVAARVRRAVADLERDALTTVSPRQVAGYHAVVAALQEVS
Ga0066710_1033105751	3300009012	Grasslands Soil	RRSFRLPLTGAGQAVAARVLAAIADLERDALSRLDAAQLAGYHAVVAALQEAC
Ga0116214_11299792	3300009520	Peatlands Soil	DPADRRSFRLPLTEAGQAVAARVLTAIGDLEHEALSRLSATQIAGYHAVISALQEAC*
Ga0116133_11794211	3300009623	Peatland	GYLTRELDPADRRSFRLPLTEAGQAVAGRVLAAVADLERDALARLSATQLAGYHAVITALQEAC*
Ga0116135_13145421	3300009665	Peatland	RELDPADRRSFRLPLTETGQAVADRVLAAVADLEREALRRLSATQLAGYHAVVTALQEAC
Ga0116215_11790102	3300009672	Peatlands Soil	GYLTRELDPADRRSFRLPLTEAGQAVATRVLTAVGDLEHEALSRLSATQIAGYHAVISALQEAS*
Ga0116224_104089911	3300009683	Peatlands Soil	ADRRSFRLPLTEAGQAVATRVLTAIGNLEHQALSRLSATQIAGYHAVISALQEAC*
Ga0116223_102040374	3300009839	Peatlands Soil	RSFRLPLTELGQEVAERVRAAVSDIERDALARLSPTQIAGFHAVVAALQAAS*
Ga0126304_101967633	3300010037	Serpentine Soil	GHITRELDPADRRSFRITLTTAGRAVAMQVHAAVIDLERAALAEMTDRDLAGYHAIITALQEVSS*
Ga0126373_106050783	3300010048	Tropical Forest Soil	ELDPADRRSFRLPLTKAGQAVAAQVLAAIADLERHALSGLDATQLAGYHAVITALQEAR*
Ga0126318_106727071	3300010152	Soil	RDLDPADRRSFRLPLTETGQAVAARVRAAIADLERDALSRLDATQLAGYHAVVTALQEAC
Ga0136449_1011093861	3300010379	Peatlands Soil	RGYLTRELDPADRRSFRLPLTEAGQAVATRVLTAIGDLEHQALSRLSATQIAGYHAVISALQEAC*
Ga0126361_103423043	3300010876	Boreal Forest Soil	LTRELDPADRRSFRLPLTEAGQAVAGRVLAAVAELERQALARLSAAQIAGYHAVITALQEVC*
Ga0138514_1000287203	3300011003	Soil	NRELDPADRRSFRLPLTEAGQATAARVLAAIADLERDALSRVDATQLAGYHAVITALQEAC*
Ga0137383_112858561	3300012199	Vadose Zone Soil	LVRELDPADRRSFRLPLTGAGQAAAARVLTAIADLERDALSRLDATQIAGYHAVITALQEAC*
Ga0137363_102661653	3300012202	Vadose Zone Soil	VPLTGAGQAVAARVLAAIADLECDALSRLDPTQLAGYHAVVAALQEAC*
Ga0137378_111436911	3300012210	Vadose Zone Soil	LARELDPADRRSFRLPLTGAGQAVSARVLAAIADLERDALSRLDATQLAGYHAVVAALQEAC*
Ga0137377_118713632	3300012211	Vadose Zone Soil	FRLPLTGAGQAAAARVLTAIADLERDALSRLDAIQIAGYHAVITALQEAC*
Ga0137386_111000351	3300012351	Vadose Zone Soil	ELDPADRRSFRLPLTETGQAVAARALAAIAALERDALSRLDATQLAGYHAVVTALQEAC*
Ga0137384_100784186	3300012357	Vadose Zone Soil	FRLPLTETGQAVAAQALAAIAALERDALSRLDATQLAGYHAVVTALQEAC*
Ga0137419_114932901	3300012925	Vadose Zone Soil	RSFRLTLTAPGRAAARKVRAAVTDLEADALAGVSARQLAGYHAVVSALQEVS*
Ga0126369_121678481	3300012971	Tropical Forest Soil	DRRSFRLPLTEAGQAVSAQVLAAIADLEHNALSRLDGSQLAGYQAVITALQEAR*
Ga0182015_106022932	3300014495	Palsa	RRSFRLPLTKDGQAVAARIHAVIGDLERDALDHLTATQMAGYHAVITALQEAC*
Ga0157377_109590132	3300014745	Miscanthus Rhizosphere	FRLPLTETGQAVAARVRAAIADLERDTLSRLDATQLAGYHAVVTALQEAC*
Ga0182036_108280472	3300016270	Soil	TEAGQAVAARVHAAVADIERDALAGLSPAQIAGFHAVITALQAACS
Ga0182033_118246061	3300016319	Soil	LTTAGQVAAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEA
Ga0182039_114009902	3300016422	Soil	FRLPLTTAGQAVAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEAC
Ga0187801_104637951	3300017933	Freshwater Sediment	RLPLTEAGQAVAAQVHAAVADLERNALANLSAAQIAGFHAVITALQETS
Ga0187783_105839283	3300017970	Tropical Peatland	LPLTEAGQQVARRVAAAIADLERDALAHLSATQIAGFHAVIMALQAAS
Ga0187883_107120051	3300018037	Peatland	DPADRRSFRLPLTEPGQAVAMRVLAAVSDLERQALARLSATQIAGYHAVITALQEVC
Ga0187766_106154311	3300018058	Tropical Peatland	TEAGQATATRVLAAIADLERDALSRLSAEQIAGYHAVITALEEAS
Ga0066667_106776893	3300018433	Grasslands Soil	FRTPVTGAGQALAARVLAAGADLERAALYRLDATQLAGYHAVVAALQEAC
Ga0206354_117193032	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	PLTETGQAVAARVRAAIADLERDALSRLDATQLAGYHAVVTALQEVC
Ga0210399_104743392	3300020581	Soil	SRELDPADRRSFRLPLTEAGQAVAARVLTAIADLERDALSRLSAAQIAGYHAVVTALQEA
Ga0210395_100469441	3300020582	Soil	LDPADRRSFRLPLTEAGQAVAARVLTAIADLERDALSRLSAAQIAGYHAVVTALQEAC
Ga0210396_101225564	3300021180	Soil	LDPTDRRSFRLPLTEAGQAVAGRVRAAVADLERETQIAGFHAVVAALQTAS
Ga0210389_113543962	3300021404	Soil	LEHRGYVARELDPADRRSFRLPLTEPGQTVAARVLAAVADLEHDALSRLDATQLAGYHAVITALQEAC
Ga0210383_106886801	3300021407	Soil	LDPTDRRSFRLPLTEAGQAVAGRVRTAVADLELDAAARLSETQIAGFHAVVAALQAAS
Ga0210390_114098642	3300021474	Soil	TDRRSFRLPLTEAGQAVAGRVRAAVADLERDATARLSETQIAGFHAVVAALQTAS
Ga0247678_10446901	3300024325	Soil	SFRLPLTETGQAVAARVRAAIADLERDALSGLDATQLAGYHAVVTALQEAC
Ga0207656_103701853	3300025321	Corn Rhizosphere	PLTETGQAVAARVRAAIANLERDALSRLDATQLAGYHAVVTALQEVC
Ga0207699_112453321	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PLTEAGQATAARVLAAIADLERDALSRLDATQLAGYHAVITALQEAC
Ga0207640_103610541	3300025981	Corn Rhizosphere	RLPLSETGQAVAARVRAAIADLERDALSGLDATQLAGYHAVVTALQEAC
Ga0209470_12525991	3300026324	Soil	YLTRELDPADRRSFRLPLTGAGQAVSARVLAAIADLERDALSRLDATQLAGYHAVVAALQEAC
Ga0209116_10774411	3300027590	Forest Soil	ELDPADRRSFRLALTEAGQAVAARVLTAVADLERDALARLSATQLAGYHAVMTALQEAC
Ga0209517_104373001	3300027854	Peatlands Soil	DPADRRSFRLPLTEAGQAVATRVLTAIGDLEHEALSRLSATQIAGYHAVISALQEAC
Ga0209693_102988771	3300027855	Soil	LDPSDRRSFRLPLTEAGQAVAARVLAAVADLEREAMAGLSATQVAGFHSVLTALQEAC
Ga0209693_103084801	3300027855	Soil	RRSFRLPLTEAGQAVSTRVLTAIADLERDALSGLSAAQIAGYHAVVTALQEAC
Ga0209415_103405243	3300027905	Peatlands Soil	RELDPADRRSFRLPLTEAGQAVATRVLTAIGDLEHEALSRLSATQIAGYHAVISALQEAC
Ga0307307_100966551	3300028718	Soil	DRRSFRLPLTETGRAVASRALAAIADLERDALSRLDATQLAGYHAVVAALQEAC
Ga0302224_102143081	3300028759	Palsa	VPRAATVFPVSGPSGSLARELDPADRRSFRLPLTDAGQAVAGRVLAAVADLEHEALAPPFRHPAGGYHAVITAPQEAC
Ga0302234_100476663	3300028773	Palsa	SGSLARELDPADRRSFRLPLTDAGQAVAGRVLAAVADLEHEALAPPFRHPAGGYHAVITAPQEAC
Ga0307284_100655373	3300028799	Soil	ELDPADRRSFRLPLTETGQAVAARVRAAIADLERDALTRLDATQLAGYHAVITALQEAC
Ga0311339_106405611	3300029999	Palsa	LTEDGQAVAARVHAVIADLERHALDHLTATQIAGYHAVISALQEAC
Ga0302176_104240232	3300030057	Palsa	VFPVSGPSGSLARELDPADRRSFRLPLTDAGQAVAGRVLAAVADLEHEALAPPFRHPAGGYHAVITAPQEAC
Ga0311354_100478077	3300030618	Palsa	LADRRSFRLPLTEAGQAVARRVRAAVADLERGALGRLSATQLAGYHAVTTALQEAC
Ga0311354_105527682	3300030618	Palsa	TRELDPADRRSFRLPLTEAGQAVAGRVLAAVADLERGALGRLSATQLAGYHAVITALQEA
Ga0316363_100934813	3300030659	Peatlands Soil	PADRRSFRLPLTEAGQAVATRVLTAIGDLEHEALSRLSATQIAGYHAVISALQEACYRG
Ga0302317_103773671	3300030677	Palsa	LTAAGQAVAGRVLAAVADLEHEALGRLSPTQLAGYHAVITALQEAC
Ga0307497_104519111	3300031226	Soil	LARELDPADRRSFRLPLTETGQAVAARVLAAIAALERDALSRLDATQLAGYHAVVTALQEAC
Ga0310915_110123761	3300031573	Soil	ATDRRSFRLRLTEAGQGAAARVRAAVADIEHDALASLSATQVAGFRAVITALQEACT
Ga0318496_103313421	3300031713	Soil	YLVRELDPADRRSFRLPLTKAGQAVAARVLAAVAELERNALSRLDATQIAGYHAVITALQEAC
Ga0318501_102878893	3300031736	Soil	RSFRLRLTEAGQGAAARVRAAVADIEHDALASLSATQVAGFHAVITALQEACT
Ga0318494_101377741	3300031751	Soil	SFRLPLTGAGQAVAARVLAAIAEVERGALARLSATQIAGFHAVITALQEAC
Ga0318554_105966432	3300031765	Soil	SFRLPLTEAGQAVAARVHAAVADIERDALAGLSPAQIAGFHAVITALQAACS
Ga0318554_107072392	3300031765	Soil	LPLTEAGQEVAARALTAIADLERSALSGLGAAQLGGFHAVLAALQEAC
Ga0318526_103948971	3300031769	Soil	RSFRLPLTEAGQQVAERVQAAVADLERDALARLSATQIAGFHAVVAALQAAS
Ga0318521_106752802	3300031770	Soil	RLTEAGQGAAARVRAAVADIEHDALASLSATQVAGFHAVITALQEACT
Ga0318547_109858182	3300031781	Soil	RSFRLPLTAAGQAAAAQVLAAIADLERTALSRLDATQLAGYHAVITALQEAS
Ga0318564_103367291	3300031831	Soil	ARELDPADRRSFRLPLTKAGQAVAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEA
Ga0310917_106669882	3300031833	Soil	LPLTTAGQAVAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEAC
Ga0318512_104040602	3300031846	Soil	RLPLTEAGQGAAARVRAAVADIEHDALASLSATQVAGFHAVITALQEACT
Ga0306921_111373383	3300031912	Soil	ARELDPADRRSFRLPLTAAGQAAAAQVLAAIADLERTALSRLDATQLAGYHAVITALQEA
Ga0308175_1024864581	3300031938	Soil	YLVREVDPADRRSFRLPLTGQGREVAARARAAIADLERTALSRLDATQLAGYHAVITALQEAC
Ga0310912_112718342	3300031941	Soil	LTKAGQAVAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEAR
Ga0306926_106890023	3300031954	Soil	RRSFRLPLTTAGQVAAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEA
Ga0318531_101478413	3300031981	Soil	RLPLTEAGQGVAARVLAAIADLERDALSRLDATQLAGFHAVITALQEAC
Ga0308176_103312624	3300031996	Soil	LPLTAQGQEAAARARAAIADLERTALSRLDATQLAGYHAVITALQEAC
Ga0306922_103474611	3300032001	Soil	DRRSFRLPLTEAGQRVAERVRAAVADLERDALARLSATQIAGFHAVVAALQAVS
Ga0318563_102968653	3300032009	Soil	RRSFRLPLTEAGQAVATRVLTAIADLEREALSGLSGTQIAGYHAVLTALQEAC
Ga0318507_101676481	3300032025	Soil	SFRLPLTEAGQGVAARVLAAIADLERDALSRLDATQLAGFHAVITALQEAC
Ga0318505_105418262	3300032060	Soil	TREPDATDRRSFRLPLTEAGQGAAARVRAAVADIEHDALASLSATQVAGFRAVITALQEACT
Ga0318525_106814922	3300032089	Soil	PLTTAGQAVAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEA
Ga0306920_1016708373	3300032261	Soil	SFRLPLTTAGQAVAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEAC
Ga0335080_112983082	3300032828	Soil	LARELDSADRRSFRLPLTTAGQAVAAQVLAAIADLERNALSRLDAAQLAGYHAVITALQEAC
Ga0335080_114619901	3300032828	Soil	DPADRRSFRLPLTKAGQAVGAQVLAAIADLERNALARLDASQLAGYHAVIAALQDAR
Ga0335069_102489535	3300032893	Soil	RELDPADRRSFRLPLTTAGQAVAAQVLAAIADLERNALSRLDATQLAGYHAVITALQEAC
Ga0335083_106710651	3300032954	Soil	PLTKAGQAVAARVLAAVADLERNAFSRLDATQIAGYHAVITALQEAC
Ga0335083_114005502	3300032954	Soil	LARELDPADRRSFRLPLTKAGQTAADQVLAAVADLERSALSRLDATQLAGYHAVITALQE
Ga0335076_100373861	3300032955	Soil	RSFRLPLTEAGQAAADRVLTAIAELERGALSGLSATQIAGYHAVITALQEAS
Ga0335076_101851404	3300032955	Soil	DRRSFRLPLTEAGQAVSAQVLAAIADLEHNALSRLDATQLAGYQAVITALQEAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088970

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences