Metagenome Family F088967

Basic Information
Family ID	F088967
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	50 residues
Representative Sequence	YDNPYGLMAIMGVNVQLHLRAGLLLLAAYAIVLVLGAVAPSVPLFLG
Number of Associated Samples	99
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	97.25 %
% of genes from short scaffolds (< 2000 bps)	95.41 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Most Common Taxonomy
Group	Bacteria (88.991 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (33.028 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.872 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.00% β-sheet: 0.00% Coil/Unstructured: 52.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF09844	DUF2071	13.76
PF00012	HSP70	13.76
PF02254	TrkA_N	11.93
PF13560	HTH_31	11.01
PF02080	TrkA_C	9.17
PF00296	Bac_luciferase	9.17
PF08241	Methyltransf_11	1.83
PF01381	HTH_3	1.83
PF01025	GrpE	0.92
PF14026	DUF4242	0.92
PF02386	TrkH	0.92
PF12680	SnoaL_2	0.92
PF02355	SecD_SecF	0.92
PF00211	Guanylate_cyc	0.92
PF00082	Peptidase_S8	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	13.76
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	9.17
COG0168	Trk-type K+ transport system, membrane component	Inorganic ion transport and metabolism [P]	0.92
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG0576	Molecular chaperone GrpE (heat shock protein HSP-70)	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.99 %
Unclassified	root	N/A	11.01 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.99 %
Unclassified	root	N/A	11.01 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.99 %
Unclassified	root	N/A	11.01 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.88 %
Unclassified	root	N/A	11.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.75 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	40.37 %
Unclassified	root	N/A	11.01 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.83 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	22.02 %
Unclassified	root	N/A	11.01 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	4.59 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	22.02 %
Unclassified	root	N/A	11.01 %
Thermomicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales	2.75 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	22.02 %
Unclassified	root	N/A	11.01 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples	1.83 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %
Thermomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → Thermomicrobiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	22.02 %
Unclassified	root	N/A	11.01 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1.83 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %
Thermomicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → Thermomicrobiaceae → Thermomicrobium	0.92 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	22.02 %
Unclassified	root	N/A	11.01 %
uncultured Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	1.83 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %
Thermomicrobium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → Thermomicrobiaceae → Thermomicrobium → Thermomicrobium roseum	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5V46DG03FRCJD	All Organisms → cellular organisms → Bacteria → Terrabacteria group	503	Open in IMG/M
2124908041\|P3_CLC_ConsensusfromContig47864	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1588	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13022858	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14031261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	752	Open in IMG/M
3300000890\|JGI11643J12802_11412302	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300000956\|JGI10216J12902_112053708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1203	Open in IMG/M
3300003987\|Ga0055471_10040405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	1229	Open in IMG/M
3300003996\|Ga0055467_10201634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	614	Open in IMG/M
3300004114\|Ga0062593_100504036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1123	Open in IMG/M
3300004114\|Ga0062593_101980094	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300004156\|Ga0062589_100796177	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300004157\|Ga0062590_101459915	All Organisms → cellular organisms → Bacteria → Terrabacteria group	684	Open in IMG/M
3300004463\|Ga0063356_102658881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	769	Open in IMG/M
3300004463\|Ga0063356_103948423	Not Available	638	Open in IMG/M
3300004479\|Ga0062595_101043767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	708	Open in IMG/M
3300004480\|Ga0062592_100260589	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300005093\|Ga0062594_101465424	Not Available	698	Open in IMG/M
3300005093\|Ga0062594_102752773	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005335\|Ga0070666_11004034	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	619	Open in IMG/M
3300005336\|Ga0070680_100408988	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300005354\|Ga0070675_101541837	Not Available	613	Open in IMG/M
3300005355\|Ga0070671_100662659	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300005366\|Ga0070659_101581166	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300005406\|Ga0070703_10191246	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300005456\|Ga0070678_101769959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	582	Open in IMG/M
3300005467\|Ga0070706_100746579	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300005518\|Ga0070699_100207681	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300005536\|Ga0070697_100654320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	925	Open in IMG/M
3300005544\|Ga0070686_100811833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	755	Open in IMG/M
3300005546\|Ga0070696_101075572	Not Available	675	Open in IMG/M
3300005549\|Ga0070704_101653792	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005598\|Ga0066706_11181753	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005713\|Ga0066905_101314358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	651	Open in IMG/M
3300006046\|Ga0066652_100446892	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1189	Open in IMG/M
3300006358\|Ga0068871_100622877	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300006358\|Ga0068871_101463555	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300006854\|Ga0075425_102769835	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300006881\|Ga0068865_101663656	Not Available	575	Open in IMG/M
3300006972\|Ga0075518_1132160	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300009011\|Ga0105251_10248231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	802	Open in IMG/M
3300009094\|Ga0111539_10688510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1190	Open in IMG/M
3300009137\|Ga0066709_102072607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	787	Open in IMG/M
3300009147\|Ga0114129_10291034	All Organisms → cellular organisms → Bacteria	2180	Open in IMG/M
3300009176\|Ga0105242_10742851	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300010029\|Ga0105074_1092905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	565	Open in IMG/M
3300010039\|Ga0126309_10988189	All Organisms → cellular organisms → Bacteria → Terrabacteria group	564	Open in IMG/M
3300010336\|Ga0134071_10626055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	564	Open in IMG/M
3300010362\|Ga0126377_12729583	All Organisms → cellular organisms → Bacteria → Terrabacteria group	569	Open in IMG/M
3300010401\|Ga0134121_11520762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	685	Open in IMG/M
3300010401\|Ga0134121_13064689	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300011119\|Ga0105246_11314459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	671	Open in IMG/M
3300012045\|Ga0136623_10006043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4772	Open in IMG/M
3300012501\|Ga0157351_1069597	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300012684\|Ga0136614_10451729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	932	Open in IMG/M
3300012911\|Ga0157301_10132388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	773	Open in IMG/M
3300012984\|Ga0164309_10821118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300012985\|Ga0164308_11991508	All Organisms → cellular organisms → Bacteria → Terrabacteria group	541	Open in IMG/M
3300014267\|Ga0075313_1226907	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300014310\|Ga0075331_1177257	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300014325\|Ga0163163_10240002	Not Available	1862	Open in IMG/M
3300014326\|Ga0157380_10668544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1039	Open in IMG/M
3300014745\|Ga0157377_11324214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	564	Open in IMG/M
3300014969\|Ga0157376_13073621	All Organisms → cellular organisms → Bacteria → Terrabacteria group	505	Open in IMG/M
3300015201\|Ga0173478_10078691	Not Available	1161	Open in IMG/M
3300015371\|Ga0132258_13079885	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300015372\|Ga0132256_100395760	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300018027\|Ga0184605_10303896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	722	Open in IMG/M
3300018052\|Ga0184638_1075334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1236	Open in IMG/M
3300018061\|Ga0184619_10102425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1287	Open in IMG/M
3300018429\|Ga0190272_11509716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	683	Open in IMG/M
3300018432\|Ga0190275_10850611	Not Available	978	Open in IMG/M
3300018432\|Ga0190275_13333383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	520	Open in IMG/M
3300018465\|Ga0190269_11090366	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300018469\|Ga0190270_12161014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	616	Open in IMG/M
3300018476\|Ga0190274_13902111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	505	Open in IMG/M
3300019356\|Ga0173481_10707094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300021080\|Ga0210382_10029385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2056	Open in IMG/M
3300025885\|Ga0207653_10144955	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300025912\|Ga0207707_11593030	Not Available	514	Open in IMG/M
3300025931\|Ga0207644_11045864	Not Available	686	Open in IMG/M
3300025932\|Ga0207690_11769262	All Organisms → cellular organisms → Bacteria → Terrabacteria group	516	Open in IMG/M
3300025934\|Ga0207686_11252701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → environmental samples → uncultured Thermomicrobiales bacterium	608	Open in IMG/M
3300025938\|Ga0207704_10836071	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300025945\|Ga0207679_11089031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	733	Open in IMG/M
3300025945\|Ga0207679_11593454	Not Available	598	Open in IMG/M
3300026032\|Ga0208419_1030448	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300026067\|Ga0207678_11497564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	596	Open in IMG/M
3300026116\|Ga0207674_11384503	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300026116\|Ga0207674_11560674	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	629	Open in IMG/M
3300026121\|Ga0207683_11414732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	643	Open in IMG/M
3300026304\|Ga0209240_1201266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	602	Open in IMG/M
3300026535\|Ga0256867_10225523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	680	Open in IMG/M
3300027577\|Ga0209874_1143023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	543	Open in IMG/M
3300027876\|Ga0209974_10023001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	2063	Open in IMG/M
3300028652\|Ga0302166_10146920	All Organisms → cellular organisms → Bacteria → Terrabacteria group	547	Open in IMG/M
3300028771\|Ga0307320_10448130	Not Available	520	Open in IMG/M
3300028784\|Ga0307282_10021183	All Organisms → cellular organisms → Bacteria	2733	Open in IMG/M
3300028796\|Ga0307287_10168430	All Organisms → cellular organisms → Bacteria → Proteobacteria	833	Open in IMG/M
3300028875\|Ga0307289_10448489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
3300028884\|Ga0307308_10429136	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300030000\|Ga0311337_10344595	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1253	Open in IMG/M
3300030002\|Ga0311350_12076383	All Organisms → cellular organisms → Bacteria → Terrabacteria group	500	Open in IMG/M
3300030336\|Ga0247826_11544682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	539	Open in IMG/M
3300030838\|Ga0311335_11034447	All Organisms → cellular organisms → Bacteria → Terrabacteria group	586	Open in IMG/M
3300031228\|Ga0299914_10675795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	874	Open in IMG/M
3300032002\|Ga0307416_100334984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → Thermomicrobiaceae → Thermomicrobium → Thermomicrobium roseum	1523	Open in IMG/M
3300032002\|Ga0307416_103553429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	522	Open in IMG/M
3300032180\|Ga0307471_102913636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	607	Open in IMG/M
3300033812\|Ga0364926_018361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1237	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.89%
Host-Associated	Host-Associated	32.11%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.55%
Plants	Host-Associated → Plants	32.11%
Aquatic	Environmental → Aquatic	7.34%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.17%
Peat	Environmental → Terrestrial → Peat	3.67%
Freshwater	Environmental → Aquatic → Freshwater	2.75%
Sediment	Environmental → Aquatic → Sediment	2.75%
Roots	Host-Associated → Plants → Roots	2.75%
Marine	Environmental → Aquatic → Marine	1.83%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.01%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.75%
Ice	Environmental → Aquatic → Freshwater → Ice	1.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.83%
Sand	Environmental → Terrestrial → Soil → Sand	1.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.59%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.75%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.75%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.75%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
2124908041	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006972	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026032	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033812	Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_05533650	2067725004	Soil	GLMAIMGLNVQLHLRAGLLLLAAYSAVLVLGAVAPTLDLFLG
P3_CLC_02451890	2124908041	Soil	YDNPYGLMAIMGVNVQLHLRAGLLLLAAYAIVLVLGAVAPSVPLFLG
ICChiseqgaiiFebDRAFT_130228582	3300000363	Soil	GLMAIMGVNIRLHLVAGVALVAAYLVVLVLQAVAPSVPLFVR*
ICChiseqgaiiFebDRAFT_140312611	3300000363	Soil	NYDNPYGLMSIMAVNINVHLYAGLLLLLAYVVVLIAGAVAPSVDLFVG*
JGI11643J12802_114123022	3300000890	Soil	GLEPNYDNPYGLMAIMGVNIQLHLAAGVALVVAYVAVLVIHAVAPGVPLFLG*
JGI10216J12902_1120537081	3300000956	Soil	PYGLMAIMGTNVQLHLIAGLLLLAGYIVVLVAGVVAPGVDLYLG*
Ga0055471_100404053	3300003987	Natural And Restored Wetlands	YGLMAIMGVNIQLHLVAGVALVVAYLVVLVIRAVAPSVPLFVR*
Ga0055467_102016341	3300003996	Natural And Restored Wetlands	DNPYGLMAIMGVNIQVHLVAGVALVVAYVAVLVIHAVAPGVPLFLR*
Ga0062593_1005040361	3300004114	Soil	VSRGLRPNYENPYGLMAIMGTNVQLHLRAGLLLLGAYLIVLVVGAVAPSVSLFIG*
Ga0062593_1019800941	3300004114	Soil	NYDNPYGLMAVMGVNVKVHLYAGVLLLAGYLLVLIAARLAPSVSLFLGR*
Ga0062589_1007961771	3300004156	Soil	SRGLEPNYDNPYGLMAVMGVNVKVHLYAGLLLLAGYAVVLILGAVAPSVSLFVGR*
Ga0062590_1014599152	3300004157	Soil	SRGLGPNYENPYGLMAIMGLNVQLHLRAGLLLLAAYAAVLVLGAVAPTLDLFLG*
Ga0063356_1026588811	3300004463	Arabidopsis Thaliana Rhizosphere	APNYDNPYGLMAIMGTNVQLHLMAGLLLLAGYVVVLVAGVVAPGVDLFLG*
Ga0063356_1039484231	3300004463	Arabidopsis Thaliana Rhizosphere	NPYALMSVMATNINLHAAAGVLLLGAYVLVLIAGAVAPSLPLFIR*
Ga0062595_1010437671	3300004479	Soil	YGLMAVMGVNVKVHLYAGVLLLAGYLLVLIAARLAPSVSLFLGR*
Ga0062592_1002605891	3300004480	Soil	NPYGLMAIMGINVQLHLRAGLLLLGAYLIVLIVGAVAPAVNLFLR*
Ga0062594_1014654241	3300005093	Soil	PYGLMAVMGINVRLHLAAGLALLAGYAIVLIAGAVAPTVSLFVR*
Ga0062594_1027527731	3300005093	Soil	PNYDNPYGLMAVMGVNVKVHLYAGLLLLAGYAVVLILGAVAPSVSLFVGR*
Ga0070666_110040342	3300005335	Switchgrass Rhizosphere	PTYRWTLMAIMGVNIKVHLYVGLLLIAAYLIVLVSGALAPSVDLFVG*
Ga0070680_1004089883	3300005336	Corn Rhizosphere	YDNPYALMAVMGVNVKLHLVAGVLLLAGYLVALVAGALAPSVSLFIGK*
Ga0070675_1015418372	3300005354	Miscanthus Rhizosphere	LEPNYDNPYGLMAIMGVNIQLHLVAGLALVAAYLVVLAVHAVAPSVPLFLG*
Ga0070671_1006626592	3300005355	Switchgrass Rhizosphere	LEPNYDNPYGLMAIMGVNIKVHLYAGLLLIAAYLVVLVSGAIVPSVDLFLG*
Ga0070659_1015811661	3300005366	Corn Rhizosphere	ALKVSRGLAPNYENPYGLMAIMGINVQLHLRAGLLLLGAYLIVLIVGAVAPAVNLFLR*
Ga0070703_101912461	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LRVSAGLEPNYDNPYGLMAIMGVNIQLHLVAGLALVAAYLVVLAVHAVAPSVPLFLG*
Ga0070678_1017699591	3300005456	Miscanthus Rhizosphere	GLMSIMGVNVQLHLRAGLLLAAAYAIVLIVGAVAPEVSLFI*
Ga0070706_1007465793	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LEPNYDNPYGLMAVMGVNVKVHLYAGLLLFAAYLLALIAASLAPSVSLFVGR*
Ga0070699_1002076814	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	DGLSPNYDNPYGLMAVMGVNIKVHLYAGVLLLVAYLVVLVAGALAPSVNLFLR*
Ga0070697_1006543202	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LEPNYDNPYALMAVMGVNVKVHLYAGLLLLAGYALVLVLGAIAPSVSLFVAR*
Ga0070686_1008118331	3300005544	Switchgrass Rhizosphere	DNPYALMAYMGVNVQLHLRAGLLLFAGYVIVLVLGAIAPSVPVFIGT*
Ga0070696_1010755721	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	FMGVNVQLHLRAGLLLFAGYVIVLVLGAIAPSVPVFIGT*
Ga0070704_1016537922	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	PNYDNPYGLMAIMGVNIKLHLVAGLALVAAYLVVLVLQAVAPSVPLFLG*
Ga0066706_111817533	3300005598	Soil	DNPYGLMAVMGVNVKVHLYAGLLLLAGYLVVLVAGALAPSVNLFVH*
Ga0066905_1013143581	3300005713	Tropical Forest Soil	APNYDNPYGLMAIMGVNIKVHLYAGLLLVAAYLAVLAAAALAPSVDLFV*
Ga0066652_1004468922	3300006046	Soil	LAFRVSRGLGPNYENPYGLMAIMGVNVQLHLRAGLLLLLAYALVLLAGIVTPTLDLFVG*
Ga0068871_1006228771	3300006358	Miscanthus Rhizosphere	NYDNPYGLMAIMGVNIKVHLYAGLLLIAAYLVVLVSGAIVPSVNLFLG*
Ga0068871_1014635551	3300006358	Miscanthus Rhizosphere	TIPLALKVSRGLRPNYENPYGLMAIMGINVQLHLRAGLLLLGAYLIVLIVGAVAPSVNLFIG*
Ga0075425_1027698352	3300006854	Populus Rhizosphere	LALQVSRGLEPNYDNPYGLMAIMGVNIKVHLYVGLLLIAAYLIVLVSGALAPSVDLFVG*
Ga0068865_1016636561	3300006881	Miscanthus Rhizosphere	YGLMAVMGINVRLHLAAGLALLAGYAIVLIAGAVAPTVSLFVR*
Ga0075518_11321601	3300006972	Arctic Peat Soil	TNVKLHMRAGLLLLAAYAIVLVMGAVAPTVRLFLG*
Ga0105251_102482312	3300009011	Switchgrass Rhizosphere	SRGLEPNYDNPYGLMAVMGVNVKVHLYAGLLLLAGYAVVLVLGALAPSVSLFVGR*
Ga0111539_106885101	3300009094	Populus Rhizosphere	YDNPYGLMAFMGVNVKLHLFAGLLLLAAYVVVIGAMAVAPGVDLFIG*
Ga0066709_1020726071	3300009137	Grasslands Soil	VSRGLAPNYDNPYGLMAVMGVNVKVHLYAGLLLLAGYLVVLVAGALAPSVNLFVH*
Ga0114129_102910341	3300009147	Populus Rhizosphere	RVSNGLAPNYDNPYGLMAFMGVNVRLHLAAGALLLVAYLIVLAAGAVAPGVDLFLG*
Ga0105242_107428511	3300009176	Miscanthus Rhizosphere	ALMAFMGVNVQLHLRAGLLLFAGYVIVLVLGAIAPSVPVFIGT*
Ga0105074_10929051	3300010029	Groundwater Sand	PNYDNPYGLMAIMGVNIRLHMLAGALLFIAYVVVLVAGAVAPGVPLFIR*
Ga0126309_109881891	3300010039	Serpentine Soil	VNVQLHLRAGLLLLAAYAVVLVLGILAPTVDLFLG*
Ga0134071_106260551	3300010336	Grasslands Soil	NYDNPYGLMAFMAVNVRLHLAAGALLLVAYLIVLAVGALAPGVDLFLG*
Ga0126377_127295832	3300010362	Tropical Forest Soil	EPNYDNPYGLMAVMGVNIKVHLFAGLLLIAAYLAVLAVSAVAPTIDLFVG*
Ga0134121_115207621	3300010401	Terrestrial Soil	PYGLMSVMGINVKVHLYAGVLLLAGYLLVLIAATLAPSVSLFLGR*
Ga0134121_130646892	3300010401	Terrestrial Soil	ARQVSRGLAPNYDNPYGLMAIMGVNIKVHLYVGLLLIAAYLIVLVSGALAPSVDLFVG*
Ga0105246_113144592	3300011119	Miscanthus Rhizosphere	YDNPYGLMAVMGVNIKLHLYAGVLLFAAYLIVLVLGAVAPSVPVFVSVIG*
Ga0136623_100060431	3300012045	Polar Desert Sand	PNYDNPYGLMAIMGINIQLHLFVGLALLAAYAIVLVVAAVAPGVPLFLGS*
Ga0157351_10695971	3300012501	Unplanted Soil	NPYGLMAIMGVNIKVQLYVGLILIAAYLIVLVSGALAPSVDLFVG*
Ga0136614_104517292	3300012684	Polar Desert Sand	GLVPNYDNPYGLMAVMGVNIKLHLFAGLLLLGAYVAVLVMGAIAPQVPLFIR*
Ga0157301_101323881	3300012911	Soil	NPYGLMAIMGTNVQLHMREGLLLLSAYGIVLIAGALAPSVDLFLG*
Ga0164309_108211182	3300012984	Soil	VNVQLHLRAGLLLLGAYLIVLVVGAVAPAVNLFLR*
Ga0164308_119915081	3300012985	Soil	PYGLMAIMGVNVQLHLRAGLLLLAGYAIVLVVGAVAPTVSLFLR*
Ga0075313_12269072	3300014267	Natural And Restored Wetlands	IPLALRVSNGLEPNYDNPYGLMAIMGVNIQLHLVAGVALVVAYLVVLVIRAVAPSVPLFVR*
Ga0075331_11772572	3300014310	Natural And Restored Wetlands	AIPLALRVSNGLEPNYDNPYGLMAIMGVNIQVHLVAGVALVVAYVAVLVIHAVAPGVPLFLR*
Ga0163163_102400023	3300014325	Switchgrass Rhizosphere	RQVSAGLMPNYDNPYGLMAFMGVNVKLHLFAGLLLFAAYVVVIGVMAVAPGVDLFIG*
Ga0157380_106685441	3300014326	Switchgrass Rhizosphere	IKLHMFAGGLLLLAYLVVLIVGAVAPDAGLFLPI*
Ga0157377_113242142	3300014745	Miscanthus Rhizosphere	ALKVSRGLAPNYENPYGLMAIMGINVQLHLRAGLLLLGAYLIVLIVGAVAPSVNLFIG*
Ga0157376_130736212	3300014969	Miscanthus Rhizosphere	MAIMGVNVQLHLRAGLLLLLAYALVLVIGVVAPTLDLFVG*
Ga0173478_100786911	3300015201	Soil	PNYENPYGLMAIMGINVQLHLRAGLLLLGAYVIVLIVGAVAPSVNLFIG*
Ga0132258_130798853	3300015371	Arabidopsis Rhizosphere	VSRGLEPNYDNPYGLMAIMGVNIKVHLYVGLLLIAAYLIVLVSGALAPSVDLFVG*
Ga0132256_1003957603	3300015372	Arabidopsis Rhizosphere	VPLALQVSRGLEPNYDNPYGLMAIMGVNIKVHLYVGLLLIAAYLIVLVSGALAPSVDLFVG*
Ga0184605_103038961	3300018027	Groundwater Sediment	VERGLEPNYDNPYGLMAIMGVNIQLHLYVGLALLAAYAIVLIVAAVAPGVPLFLGG
Ga0184638_10753343	3300018052	Groundwater Sediment	PNYDNPYGLMSIMAVNINVHLYAGLLLLLAYVVVLIAGAVAPSVDLFVG
Ga0184619_101024253	3300018061	Groundwater Sediment	IPLALRVERGLEPNYDNPYGLMAIMGVNIQLHLYVGLALLAAYAIVLIVAAVAPGVPLFLGR
Ga0190272_115097162	3300018429	Soil	YDNPYGLMAIMGANVQLHLMAGLLLLAAYAIVLVTGAVAPGVDLFLG
Ga0190275_108506113	3300018432	Soil	ALQVSRGLEPNYDNPYGLMAIMGVNVQLHLRAGLLLLAAYMVVLILGAVAPGVPLFIG
Ga0190275_133333831	3300018432	Soil	QVSRGLEPNYDNPYGLMAIMGVNIKVHLYAGALLLLAYAVVLIVGAVAPSVDLFIG
Ga0190269_110903661	3300018465	Soil	EPNYDNPYGLMAVMGVNIQLHLVVGMALLAAYLVVLVVQAFAPSVPLFVR
Ga0190270_121610142	3300018469	Soil	IMGTNVQLHLRAGLLLLGAYLIVLIVGAVAPSVSLFIG
Ga0190274_139021113	3300018476	Soil	AIMGTNVQLHLRAGLLLLGAYLIVLIVGAVAPTVNLFIG
Ga0173481_107070942	3300019356	Soil	GINVQLHLRAGLLLLGAYLIVLIVGAVAPAVNLFLR
Ga0210382_100293854	3300021080	Groundwater Sediment	GLAPNYDNPYGLMAVMGVNVKVHLYAGLLLLAGYLVVLIAGALAPSVNLFLR
Ga0207653_101449551	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	PLALRVSAGLEPNYDNPYGLMAIMGVNIQLHLVAGLALVAAYLVVLAVHAVAPSVPLFLG
Ga0207707_115930301	3300025912	Corn Rhizosphere	ALMAYMGVNVQLHLRAGLLLFAGYVIVLVLGAIAPSVPVFIGT
Ga0207644_110458641	3300025931	Switchgrass Rhizosphere	LMAIMGINVQLHLRAGLLLLGAYLIVLIVGAVAPSVNLFIG
Ga0207690_117692621	3300025932	Corn Rhizosphere	LEPNYDNPYGLMAIMGVNIKVHLYAGLLLIAAYLIVLLSAALAPSLNLFVG
Ga0207686_112527012	3300025934	Miscanthus Rhizosphere	NPYALMAFMGVNVQLHLRAGLLLFAGYVIVLVLGAIAPSVPVFIGT
Ga0207704_108360711	3300025938	Miscanthus Rhizosphere	DNPYGLMAIMGVNIQLHLVAGLALVAAYLVVLAVHAVAPSVPLFLG
Ga0207679_110890312	3300025945	Corn Rhizosphere	PNYDNPYGLMAFMGVNVKLHLFAGLLLLAAYVVVIGVMAVAPGVDLFIG
Ga0207679_115934541	3300025945	Corn Rhizosphere	NPYGLMAIMGINVQLHLRAGLLLLGAYLIVLIVGAVAPSVNLFIG
Ga0208419_10304482	3300026032	Natural And Restored Wetlands	RVSNGLEPNYDNPYGLMAIMGVNIQVHLVAGVALVVAYVAVLVIHAVAPGVPLFLR
Ga0207678_114975641	3300026067	Corn Rhizosphere	LARQVSRGLLPNYDNPYALMAYMGVNVQLHLRAGLLLFAGYVIVLVLGAIAPSVPVFIGT
Ga0207674_113845031	3300026116	Corn Rhizosphere	YGLMAIMGVNIKLHLVAGLALVAAYLVVLVLQAVAPSVPLFLG
Ga0207674_115606741	3300026116	Corn Rhizosphere	AMQVSRGLEPNYDNPYGLMAIMGVNIKVHLYAGLLLIAAYLIVLLSGALAPSLNLFVG
Ga0207683_114147321	3300026121	Miscanthus Rhizosphere	SRGLLPNYDNPYALMAFMGVNVQLHLRAGLLLFAGYVIVLVLGAIAPSVPVFIGT
Ga0209240_12012661	3300026304	Grasslands Soil	PYGLMAVMGVNVKVHLYAGLLLLAGYLVVLIAGAVAPSVNLFLR
Ga0256867_102255232	3300026535	Soil	ALRVHRGLRPNYDNPYGLMAVMAVNIQVHLFAGILLVAAYAIVLVAGAVAPGVPLFIR
Ga0209874_11430231	3300027577	Groundwater Sand	LARRVSAGLAPNYDNPYGLMAFMGVNVQLHLAAGVLLVVAYGIVIAAMAVAPGVDLFLG
Ga0209974_100230013	3300027876	Arabidopsis Thaliana Rhizosphere	ALRVSAGLEPNYDNPYGLMAIMGVNIQLHLVAGLALVAAYLVVLAVHAVAPSVPLFLG
Ga0302166_101469202	3300028652	Fen	PYGLMAIMGVNVQLHLRAGLLLLGAYALVLVLGAVAPSVHLFIR
Ga0307320_104481302	3300028771	Soil	AIMATNVQLHLVAGVMLLVGYLIVLIVGAIAPSVDLFVG
Ga0307282_100211831	3300028784	Soil	PYGLMAVMGVNVKVHLYAGLLLLAGYLVVLIAGALAPSVNLFLR
Ga0307287_101684302	3300028796	Soil	FTIPLALRVSRGLEPNYENPYGLMAIMGVNIQLHLFAGLLLLLGYALVLVVGAVAPGVPLFVR
Ga0307289_104484892	3300028875	Soil	PNYDNPYGLMAIMGENVQLHLIAGLLLLAGYAIVIVAGAIAPGVDLFLG
Ga0307308_104291361	3300028884	Soil	ARRVSRGLEPNYDNPYGLMAVMGVNVKVHLYAGLLLLAGYAVVLILGAVAPSVSLFVGR
Ga0311337_103445952	3300030000	Fen	GLMAIMGVNVQLHLRAGLLLLGAYALVLVLGAVAPSVHLFIR
Ga0311350_120763832	3300030002	Fen	YDNPYGLMAIMGVNVQLHLRAGLLLLGAYVVVLVLGAVAPSLHLFLR
Ga0247826_115446821	3300030336	Soil	GLAPNYDNPYGLMAVMGVNIKLHLYAGVLLFAAYLIVLVLGAVAPSVPVFVSVIG
Ga0311335_110344471	3300030838	Fen	YGLMAIMGVNVQLHLRAGLLLLGAYVVVLVLGAVAPSLHLFLR
Ga0299914_106757951	3300031228	Soil	LLTIPLALRVHRGLRPNYDNPYGLMAVMAVNIQVHLFAGILLVAAYAIVLVAGVVAPGVPLFIR
Ga0307416_1003349841	3300032002	Rhizosphere	YGLMAIMGVNIQVHLVAGVALVVAYVAVLVIHAVAPGVPLFLR
Ga0307416_1035534291	3300032002	Rhizosphere	GLAPNYDNPYGLMAIMGTNVQLHLMAGLLLLAGYVVVLVAGVIAPGVDLFVG
Ga0307471_1029136361	3300032180	Hardwood Forest Soil	AGLRPNYDNPYGLMAFMGVNVQLHLRAGLLLLAAYAIVIVLGAFAPSVPVFIGG
Ga0364926_018361_1058_1210	3300033812	Sediment	MPNYDNPYGLMAVMGRNIKVHAYAGLLLLAAYAAVLIAGAVAPSLDLFLG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088967

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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