Metagenome / Metatranscriptome Family F088862

Basic Information
Family ID	F088862
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	48 residues
Representative Sequence	ALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Number of Associated Samples	100
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.17 %
% of genes near scaffold ends (potentially truncated)	88.07 %
% of genes from short scaffolds (< 2000 bps)	88.07 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (77.982 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.110 % of family members)
Environment Ontology (ENVO)	Unclassified (28.440 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.119 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.44% β-sheet: 0.00% Coil/Unstructured: 55.56%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00072	Response_reg	63.30
PF07992	Pyr_redox_2	9.17
PF01135	PCMT	6.42
PF00027	cNMP_binding	4.59
PF08281	Sigma70_r4_2	3.67
PF12831	FAD_oxidored	2.75
PF04545	Sigma70_r4	1.83
PF00890	FAD_binding_2	1.83
PF02148	zf-UBP	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	6.42
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	6.42
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	6.42
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	6.42
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.98 %
Unclassified	root	N/A	22.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.98 %
Unclassified	root	N/A	22.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.98 %
Unclassified	root	N/A	22.02 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	74.31 %
Unclassified	root	N/A	22.02 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	70.64 %
Unclassified	root	N/A	22.02 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	2.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	46.79 %
Unclassified	root	N/A	22.02 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.75 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.83 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	33.03 %
Unclassified	root	N/A	22.02 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.67 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.75 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	33.03 %
Unclassified	root	N/A	22.02 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.67 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.75 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.83 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	33.03 %
Unclassified	root	N/A	22.02 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.67 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.75 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.83 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	1.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.02 %
Streptomyces glebosus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	21.10 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.67 %
Streptomyces alni	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alni	2.75 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2.75 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1.83 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.83 %
Streptomyces cahuitamycinicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cahuitamycinicus	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y01DQ8KI	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	676	Open in IMG/M
3300000956\|JGI10216J12902_109105549	Not Available	585	Open in IMG/M
3300004643\|Ga0062591_101597862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	657	Open in IMG/M
3300005173\|Ga0066822_1005685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	714	Open in IMG/M
3300005181\|Ga0066678_10276929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1092	Open in IMG/M
3300005332\|Ga0066388_103842569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	766	Open in IMG/M
3300005337\|Ga0070682_100036572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3002	Open in IMG/M
3300005354\|Ga0070675_100084076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2657	Open in IMG/M
3300005363\|Ga0008090_14843752	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300005434\|Ga0070709_10378555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1052	Open in IMG/M
3300005434\|Ga0070709_11587805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	532	Open in IMG/M
3300005437\|Ga0070710_10030790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2890	Open in IMG/M
3300005467\|Ga0070706_100221630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1765	Open in IMG/M
3300005577\|Ga0068857_101865302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300005718\|Ga0068866_10336465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	955	Open in IMG/M
3300006573\|Ga0074055_11642441	Not Available	599	Open in IMG/M
3300006605\|Ga0074057_10033586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	993	Open in IMG/M
3300006755\|Ga0079222_11506382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	631	Open in IMG/M
3300006871\|Ga0075434_101503606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	682	Open in IMG/M
3300007265\|Ga0099794_10413474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	705	Open in IMG/M
3300009090\|Ga0099827_10449203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1105	Open in IMG/M
3300009177\|Ga0105248_10108803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3125	Open in IMG/M
3300009553\|Ga0105249_11788379	Not Available	687	Open in IMG/M
3300009792\|Ga0126374_10869487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	696	Open in IMG/M
3300009839\|Ga0116223_10580417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	648	Open in IMG/M
3300010046\|Ga0126384_10435667	Not Available	1115	Open in IMG/M
3300010047\|Ga0126382_12143841	Not Available	536	Open in IMG/M
3300010048\|Ga0126373_11617202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	712	Open in IMG/M
3300010379\|Ga0136449_100184889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4000	Open in IMG/M
3300010379\|Ga0136449_103555208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	592	Open in IMG/M
3300010396\|Ga0134126_12290553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	589	Open in IMG/M
3300011119\|Ga0105246_11968921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	563	Open in IMG/M
3300012199\|Ga0137383_10772586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	701	Open in IMG/M
3300012200\|Ga0137382_10683366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300012209\|Ga0137379_10042973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4360	Open in IMG/M
3300012210\|Ga0137378_11833939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	510	Open in IMG/M
3300012477\|Ga0157336_1005255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	848	Open in IMG/M
3300012924\|Ga0137413_11014860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	651	Open in IMG/M
3300012971\|Ga0126369_12328824	Not Available	622	Open in IMG/M
3300014745\|Ga0157377_10033609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alni	2800	Open in IMG/M
3300014745\|Ga0157377_11506844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	535	Open in IMG/M
3300015356\|Ga0134073_10329543	Not Available	554	Open in IMG/M
3300016319\|Ga0182033_11718346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	569	Open in IMG/M
3300016341\|Ga0182035_11945703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	534	Open in IMG/M
3300016371\|Ga0182034_11556328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300016445\|Ga0182038_11202964	Not Available	676	Open in IMG/M
3300017943\|Ga0187819_10011448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5034	Open in IMG/M
3300020170\|Ga0179594_10244539	Not Available	676	Open in IMG/M
3300020199\|Ga0179592_10298591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	716	Open in IMG/M
3300020580\|Ga0210403_11484746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	510	Open in IMG/M
3300021171\|Ga0210405_11007842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	627	Open in IMG/M
3300021402\|Ga0210385_11511879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	513	Open in IMG/M
3300021404\|Ga0210389_10995012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	650	Open in IMG/M
3300021405\|Ga0210387_10929728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300021420\|Ga0210394_10240491	Not Available	1584	Open in IMG/M
3300021478\|Ga0210402_10952524	Not Available	785	Open in IMG/M
3300021478\|Ga0210402_11037340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300021559\|Ga0210409_10437991	Not Available	1166	Open in IMG/M
3300024283\|Ga0247670_1005661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alni	2375	Open in IMG/M
3300025735\|Ga0207713_1240260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cahuitamycinicus	538	Open in IMG/M
3300025898\|Ga0207692_10143048	Not Available	1362	Open in IMG/M
3300025906\|Ga0207699_10036084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alni	2816	Open in IMG/M
3300025906\|Ga0207699_10821525	Not Available	684	Open in IMG/M
3300025910\|Ga0207684_11676688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	513	Open in IMG/M
3300025929\|Ga0207664_11787202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	537	Open in IMG/M
3300025939\|Ga0207665_10393045	Not Available	1054	Open in IMG/M
3300026326\|Ga0209801_1308065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	562	Open in IMG/M
3300026494\|Ga0257159_1055437	Not Available	676	Open in IMG/M
3300027505\|Ga0209218_1142140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	507	Open in IMG/M
3300027765\|Ga0209073_10237332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300027875\|Ga0209283_10305010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1050	Open in IMG/M
3300028536\|Ga0137415_10652386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300028787\|Ga0307323_10283210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	596	Open in IMG/M
3300028807\|Ga0307305_10097772	Not Available	1356	Open in IMG/M
3300028828\|Ga0307312_11175042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	507	Open in IMG/M
3300029636\|Ga0222749_10263038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	881	Open in IMG/M
3300030707\|Ga0310038_10411274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	586	Open in IMG/M
3300031543\|Ga0318516_10376014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	819	Open in IMG/M
3300031543\|Ga0318516_10602254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300031564\|Ga0318573_10030315	All Organisms → cellular organisms → Bacteria	2526	Open in IMG/M
3300031748\|Ga0318492_10655277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	561	Open in IMG/M
3300031768\|Ga0318509_10495480	Not Available	683	Open in IMG/M
3300031770\|Ga0318521_10524099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300031771\|Ga0318546_10582757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	786	Open in IMG/M
3300031779\|Ga0318566_10323973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	762	Open in IMG/M
3300031779\|Ga0318566_10521263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	581	Open in IMG/M
3300031782\|Ga0318552_10337207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	768	Open in IMG/M
3300031832\|Ga0318499_10367355	Not Available	552	Open in IMG/M
3300031845\|Ga0318511_10513203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	555	Open in IMG/M
3300031910\|Ga0306923_11131505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	841	Open in IMG/M
3300031945\|Ga0310913_11097170	Not Available	556	Open in IMG/M
3300031947\|Ga0310909_10369636	Not Available	1204	Open in IMG/M
3300031947\|Ga0310909_10472433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1052	Open in IMG/M
3300031959\|Ga0318530_10403152	Not Available	567	Open in IMG/M
3300032001\|Ga0306922_10199388	All Organisms → cellular organisms → Bacteria	2148	Open in IMG/M
3300032001\|Ga0306922_11852627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	592	Open in IMG/M
3300032009\|Ga0318563_10644374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	570	Open in IMG/M
3300032054\|Ga0318570_10268655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	774	Open in IMG/M
3300032065\|Ga0318513_10278602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	811	Open in IMG/M
3300032066\|Ga0318514_10188949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1077	Open in IMG/M
3300032067\|Ga0318524_10018013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3112	Open in IMG/M
3300032094\|Ga0318540_10060613	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300032174\|Ga0307470_10156487	Not Available	1401	Open in IMG/M
3300032261\|Ga0306920_100990776	Not Available	1224	Open in IMG/M
3300032782\|Ga0335082_11473186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	552	Open in IMG/M
3300032828\|Ga0335080_11103458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	802	Open in IMG/M
3300033290\|Ga0318519_10598685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	669	Open in IMG/M
3300033475\|Ga0310811_10594468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1115	Open in IMG/M
3300034819\|Ga0373958_0127454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces glebosus	620	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.07%
Host-Associated	Host-Associated	11.01%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.16%
Plants	Host-Associated → Plants	11.01%
Aquatic	Environmental → Aquatic	0.92%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.39%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088862

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_02569940	2170459017	Switchgrass, Maize And Mischanthus Litter	ADQIEPCTDGLIPIRARILVRAGVPWPQAFALSRYWLGPK
JGI10216J12902_1091055492	3300000956	Soil	AADQIEPCTDGLIPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0062591_1015978622	3300004643	Soil	ALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0066822_10056851	3300005173	Soil	AADQIEPCTDGPEGLIPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0066678_102769292	3300005181	Soil	LALNAAAEQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0066388_1038425692	3300005332	Tropical Forest Soil	GCDPFNFGDFVWLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK*
Ga0070682_1000365723	3300005337	Corn Rhizosphere	AADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0070675_1000840763	3300005354	Miscanthus Rhizosphere	DQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0008090_148437522	3300005363	Tropical Rainforest Soil	ADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK*
Ga0070709_103785551	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LRRALHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK*
Ga0070709_115878052	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RLALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0070710_100307901	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ALHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK*
Ga0070706_1002216301	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	DFGDFVRIALNAAADQIEPCTDGPEGLVPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0068857_1018653021	3300005577	Corn Rhizosphere	RRALHAAADQIEPQPDGLAPIRARILTSAGVPWKQAFAISQYWIHDA*
Ga0068866_103364652	3300005718	Miscanthus Rhizosphere	DQIEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0074055_116424411	3300006573	Soil	GDFVRIALNTAADQIEPCTDGPEGLIPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0074057_100335861	3300006605	Soil	QIEPCTDGPEGLIPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0079222_115063822	3300006755	Agricultural Soil	FGEYLRRALHAAADQVEPQPDGLAPIRARILTSAGVPWKQAFAISQYWIHDA*
Ga0075434_1015036061	3300006871	Populus Rhizosphere	GDFVRLALNAAADQIEPCTDGLIPIRARILVRAGVPWPQAFALSRYWLGPK*
Ga0099794_104134741	3300007265	Vadose Zone Soil	LNFGDIVRLALYAAADQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0099827_104492032	3300009090	Vadose Zone Soil	LNFAEFVRLALHAAADQVEPRADGLAPIRARILAGAGVPWPQAFAISQYWLGPK*
Ga0105248_101088031	3300009177	Switchgrass Rhizosphere	EPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0105249_117883791	3300009553	Switchgrass Rhizosphere	ADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0126374_108694872	3300009792	Tropical Forest Soil	VWLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK*
Ga0116223_105804172	3300009839	Peatlands Soil	LNFAEFVRLALHAAADQVEPRADGLAPIRARILAAAGVPWPRALAISQYWLGPQ*
Ga0126384_104356672	3300010046	Tropical Forest Soil	DGHEGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0126382_121438412	3300010047	Tropical Forest Soil	FVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0126373_116172021	3300010048	Tropical Forest Soil	VFAEFLRRALHTAADQVEPCADGLAPIRARILARAGVPWPQALAISRYWLGPK*
Ga0136449_1001848892	3300010379	Peatlands Soil	LSFADFVRLALYAAADQLEPRGDGLAPIRAKILAAAGVPWAKALAISRYWLGPK*
Ga0136449_1035552082	3300010379	Peatlands Soil	LSFAEFLRLALHAAADQVEPRADGLAPIRARILAAAGVPWAKALAISRYWLGPK*
Ga0134126_122905532	3300010396	Terrestrial Soil	VSPPVFAEFLRRALHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK*
Ga0105246_119689211	3300011119	Miscanthus Rhizosphere	MDFGEYLRRALHAAADQVEPQPDGLAPIRARILTSAGVPWKQAFAISQYWIHDA*
Ga0137383_107725861	3300012199	Vadose Zone Soil	LGDFVRLALNAAAEQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0137382_106833662	3300012200	Vadose Zone Soil	LGDFVRLALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0137379_100429732	3300012209	Vadose Zone Soil	LNFAEFVRLALHTAADQVEPRPDGLAPIRARILAGAGVPWRQAFAISQYWLGPK*
Ga0137378_118339391	3300012210	Vadose Zone Soil	EPCADGLVSIRARILAGSGVPWPQALALSLYWLDPKRKS*
Ga0157336_10052552	3300012477	Arabidopsis Rhizosphere	AADQIEPCTDGPEGLVPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0137413_110148601	3300012924	Vadose Zone Soil	ARGRDFGDFVRLALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWPGPK*
Ga0126369_123288241	3300012971	Tropical Forest Soil	VEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK*
Ga0157377_100336091	3300014745	Miscanthus Rhizosphere	NAAADQIEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0157377_115068442	3300014745	Miscanthus Rhizosphere	FVRLALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0134073_103295431	3300015356	Grasslands Soil	LNAAADQIEPCTDGLVPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0182033_117183462	3300016319	Soil	GEFVRVALHAAADQVEPCTDGLVPIRARILARAGVPWPQAFAVSRYWLGPK
Ga0182035_119457032	3300016341	Soil	GDFVRLALQSAADQVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0182034_115563282	3300016371	Soil	GDFVRLALHAAADQVEPCVDGPDGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0182038_112029642	3300016445	Soil	VRGRDFGDFVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0187819_100114486	3300017943	Freshwater Sediment	VRLALQAAADQVEPRADGLVPIRARILAAAGVPWPKALAISQYWLGPP
Ga0179594_102445391	3300020170	Vadose Zone Soil	AADQIEPCADGPDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0179592_102985911	3300020199	Vadose Zone Soil	AAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210403_114847462	3300020580	Soil	ALHAAADQIEPCSDGLEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210405_110078422	3300021171	Soil	GDIVRLALHAAADQIEPCSDGLEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210385_115118791	3300021402	Soil	YALQAAADQVDPHADVLVPIRARILAGAGIPWPQAFAISLNWIHDA
Ga0210389_109950121	3300021404	Soil	DQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0210387_109297281	3300021405	Soil	ALRAATDQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210394_102404911	3300021420	Soil	DFGDFVRLALNTAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210402_109525242	3300021478	Soil	LHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK
Ga0210402_110373401	3300021478	Soil	LHAAADQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210409_104379911	3300021559	Soil	PCSDGLEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0247670_10056613	3300024283	Soil	FVYRALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0207713_12402602	3300025735	Switchgrass Rhizosphere	ARGRDFGDFVRLALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0207692_101430481	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	EPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0207699_100360841	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	DFVRLALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0207699_108215252	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	ARGRDFGDFVRLALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0207684_116766881	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	DFGDFVRIALNAAADQIEPCTDGPEGLVPIRARILARAGVPWPQAFAMSRYWLGPK
Ga0207664_117872022	3300025929	Agricultural Soil	ALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0207665_103930451	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSPPVFAELLRRALHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK
Ga0209801_13080651	3300026326	Soil	LALNAAAEQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0257159_10554372	3300026494	Soil	AADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0209218_11421401	3300027505	Forest Soil	VRYALQAAADQVEPHADALVPIRARILAGAGIPWPQAFAISLNWIHDA
Ga0209073_102373322	3300027765	Agricultural Soil	ALNAAADQVEPCADGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0209283_103050102	3300027875	Vadose Zone Soil	ADFVRQAMHSAVDQVEPRADGLVSIRARILAGSGVPWPQALALSLYWLGPKHPAGRGGVAKG
Ga0137415_106523862	3300028536	Vadose Zone Soil	RDFGEFVRLALNAAADQIEPCTDGPEGLIPIRARILARAGVPWPQAFAMSRYWLGPK
Ga0307323_102832101	3300028787	Soil	VRLALNTAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0307305_100977721	3300028807	Soil	LNTATDQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0307312_111750422	3300028828	Soil	LNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0222749_102630382	3300029636	Soil	ADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0310038_104112741	3300030707	Peatlands Soil	VEPRGDGLAPIRAKILAAAGVPWAKALAISRYWLGPK
Ga0318516_103760142	3300031543	Soil	FGDFVRLALHAAADQVEPCVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0318516_106022541	3300031543	Soil	QVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318573_100303153	3300031564	Soil	SPSNPPTFAELVRLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0318492_106552771	3300031748	Soil	DQVEPGSDGLVPIRARILAAAGVPWPQAFALSRYWLGP
Ga0318509_104954801	3300031768	Soil	ALQSAADQVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318521_105240991	3300031770	Soil	VEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318546_105827571	3300031771	Soil	ADQVEPCVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0318566_103239732	3300031779	Soil	HAAADQVEPCTDGLIPIRARILARAGVPWPQAFAMSRYWLGPK
Ga0318566_105212632	3300031779	Soil	RARLALHAAADQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318552_103372071	3300031782	Soil	VEPCVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0318499_103673551	3300031832	Soil	QVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0318511_105132032	3300031845	Soil	RLALQSAADQVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0306923_111315051	3300031910	Soil	IEPCVDGPDGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0310913_110971702	3300031945	Soil	FGDFVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0310909_103696361	3300031947	Soil	RDFGDFVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0310909_104724332	3300031947	Soil	CDPFSFGDFVRLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0318530_104031521	3300031959	Soil	VRLALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0306922_101993883	3300032001	Soil	SFGDFVRLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0306922_118526272	3300032001	Soil	VSPSNPPTFAELVRLALHSAADQVEPGSDGLVPIRARILAAAGVPWPQAFALSRYWLGP
Ga0318563_106443742	3300032009	Soil	ARLALHAAADQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318570_102686551	3300032054	Soil	ALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0318513_102786021	3300032065	Soil	VRLALHAAAEQVEPCVDGPEGLVPIRARILARAGVPWPQAFALSRYWLGPK
Ga0318514_101889492	3300032066	Soil	AARGRDFGDFVRLALHAAADQVEPCVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGP
Ga0318524_100180131	3300032067	Soil	MHSAADQVEPCADGLVSIRARILAGAGVPWPQALALSVYWLGPKRRREPGAGA
Ga0318540_100606133	3300032094	Soil	ADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0307470_101564871	3300032174	Hardwood Forest Soil	QIEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0306920_1009907761	3300032261	Soil	VDGPEGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0335082_114731862	3300032782	Soil	GPEPVSPAAFAEFLRRALNAAADQVEPCTDGLAPIRARILARAGVPWPQALAVSRYWLGP
Ga0335080_111034581	3300032828	Soil	RGRDFADFVRLALHAAADQIEPRADGPEGLVPIRARILARSGVPWPQAFAMSRYWLGPK
Ga0318519_105986853	3300033290	Soil	DPFSFGDFVRLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0310811_105944681	3300033475	Soil	GRDFGEFVRLALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0373958_0127454_498_620	3300034819	Rhizosphere Soil	ADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK

Hidden Markov Model


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