Metagenome / Metatranscriptome Family F088857

Basic Information
Family ID	F088857
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	43 residues
Representative Sequence	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQ
Number of Associated Samples	102
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.80 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	94.50 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Bacteria (93.578 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.027 % of family members)
Environment Ontology (ENVO)	Unclassified (25.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.532 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.94% β-sheet: 0.00% Coil/Unstructured: 76.06%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00155	Aminotran_1_2	40.37
PF00106	adh_short	1.83
PF07883	Cupin_2	1.83
PF13404	HTH_AsnC-type	0.92
PF16537	T2SSB	0.92
PF01904	DUF72	0.92
PF00753	Lactamase_B	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	90.83 %
Unclassified	root	N/A	6.42 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	89.91 %
Unclassified	root	N/A	6.42 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.76 %
Unclassified	root	N/A	6.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	12.84 %
Unclassified	root	N/A	6.42 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	12.84 %
Unclassified	root	N/A	6.42 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	6.42 %
Unclassified	root	N/A	6.42 %
Kutzneria	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.42 %
Pseudonocardia dioxanivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	5.50 %
unclassified Kutzneria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.42 %
Pseudonocardia dioxanivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	5.50 %
Kutzneria sp. 744	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria → Kutzneria sp. 744	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0287511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300002245\|JGIcombinedJ26739_100617184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	962	Open in IMG/M
3300004633\|Ga0066395_10385800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria → Kutzneria sp. 744	786	Open in IMG/M
3300005332\|Ga0066388_102863884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	881	Open in IMG/M
3300005434\|Ga0070709_10793012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300005435\|Ga0070714_101666556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	623	Open in IMG/M
3300005439\|Ga0070711_100948558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	736	Open in IMG/M
3300005471\|Ga0070698_101173665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	717	Open in IMG/M
3300005530\|Ga0070679_100630354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1015	Open in IMG/M
3300005712\|Ga0070764_10742930	Not Available	607	Open in IMG/M
3300005713\|Ga0066905_101596735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	597	Open in IMG/M
3300005764\|Ga0066903_103158636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	891	Open in IMG/M
3300006575\|Ga0074053_11926395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	1549	Open in IMG/M
3300006579\|Ga0074054_11955949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	1603	Open in IMG/M
3300006852\|Ga0075433_10153219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	2050	Open in IMG/M
3300006954\|Ga0079219_11978033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300009143\|Ga0099792_10964669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300010043\|Ga0126380_10498740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	934	Open in IMG/M
3300010047\|Ga0126382_11015308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300010047\|Ga0126382_11926194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M
3300010359\|Ga0126376_10998491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	837	Open in IMG/M
3300010360\|Ga0126372_10050310	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2816	Open in IMG/M
3300012176\|Ga0153952_1129253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	555	Open in IMG/M
3300012199\|Ga0137383_11097636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	576	Open in IMG/M
3300012201\|Ga0137365_11185695	Not Available	547	Open in IMG/M
3300012206\|Ga0137380_11097701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300012207\|Ga0137381_10593749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	965	Open in IMG/M
3300012356\|Ga0137371_10178710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1663	Open in IMG/M
3300012359\|Ga0137385_10752037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300012359\|Ga0137385_10816957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	774	Open in IMG/M
3300013105\|Ga0157369_10196283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2119	Open in IMG/M
3300013297\|Ga0157378_10771006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	986	Open in IMG/M
3300015242\|Ga0137412_10801886	Not Available	691	Open in IMG/M
3300015245\|Ga0137409_10697167	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300015374\|Ga0132255_100881320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1337	Open in IMG/M
3300017944\|Ga0187786_10050632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1249	Open in IMG/M
3300018012\|Ga0187810_10224716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	767	Open in IMG/M
3300020581\|Ga0210399_10315863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1304	Open in IMG/M
3300020582\|Ga0210395_10120989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1944	Open in IMG/M
3300020583\|Ga0210401_10704494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	870	Open in IMG/M
3300021088\|Ga0210404_10915012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300021178\|Ga0210408_10144780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	1881	Open in IMG/M
3300021180\|Ga0210396_11493853	Not Available	555	Open in IMG/M
3300021404\|Ga0210389_10128053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1964	Open in IMG/M
3300021405\|Ga0210387_10987649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300021405\|Ga0210387_11063356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300021406\|Ga0210386_10767687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	829	Open in IMG/M
3300024179\|Ga0247695_1029704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776	Open in IMG/M
3300024245\|Ga0247677_1004640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1826	Open in IMG/M
3300024288\|Ga0179589_10017827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2289	Open in IMG/M
3300025901\|Ga0207688_10999001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300025906\|Ga0207699_10965237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300025910\|Ga0207684_10371455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1230	Open in IMG/M
3300025921\|Ga0207652_10232502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1661	Open in IMG/M
3300025921\|Ga0207652_10972520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300025922\|Ga0207646_10171500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1959	Open in IMG/M
3300026067\|Ga0207678_11721642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300026217\|Ga0209871_1056463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300026306\|Ga0209468_1098991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	941	Open in IMG/M
3300026343\|Ga0209159_1163105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	835	Open in IMG/M
3300026557\|Ga0179587_10698217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300027692\|Ga0209530_1166001	Not Available	616	Open in IMG/M
3300027846\|Ga0209180_10720688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	540	Open in IMG/M
3300027867\|Ga0209167_10667232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300027884\|Ga0209275_10372892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	802	Open in IMG/M
3300027908\|Ga0209006_10387454	All Organisms → cellular organisms → Bacteria → Proteobacteria	1179	Open in IMG/M
3300027908\|Ga0209006_10427190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1113	Open in IMG/M
3300028536\|Ga0137415_11309386	Not Available	543	Open in IMG/M
3300028906\|Ga0308309_10570733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M
3300030013\|Ga0302178_10339211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	683	Open in IMG/M
3300030618\|Ga0311354_10624799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300030979\|Ga0068589_11285515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300031234\|Ga0302325_11470936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300031469\|Ga0170819_14463625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300031549\|Ga0318571_10343824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300031564\|Ga0318573_10632817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	576	Open in IMG/M
3300031572\|Ga0318515_10067629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia dioxanivorans	1830	Open in IMG/M
3300031640\|Ga0318555_10406509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	737	Open in IMG/M
3300031680\|Ga0318574_10550557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	676	Open in IMG/M
3300031681\|Ga0318572_10301366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	947	Open in IMG/M
3300031681\|Ga0318572_10682469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300031715\|Ga0307476_10637047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	790	Open in IMG/M
3300031719\|Ga0306917_11035895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300031744\|Ga0306918_10252387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1347	Open in IMG/M
3300031764\|Ga0318535_10173712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	963	Open in IMG/M
3300031765\|Ga0318554_10348714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	841	Open in IMG/M
3300031779\|Ga0318566_10514816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	585	Open in IMG/M
3300031781\|Ga0318547_10646615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	656	Open in IMG/M
3300031796\|Ga0318576_10283305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	782	Open in IMG/M
3300031820\|Ga0307473_10503499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	818	Open in IMG/M
3300031879\|Ga0306919_10804565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	722	Open in IMG/M
3300031910\|Ga0306923_10194351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2319	Open in IMG/M
3300031946\|Ga0310910_10357104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1155	Open in IMG/M
3300031981\|Ga0318531_10329702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	690	Open in IMG/M
3300032001\|Ga0306922_10918444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	908	Open in IMG/M
3300032008\|Ga0318562_10608205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	631	Open in IMG/M
3300032035\|Ga0310911_10676975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	598	Open in IMG/M
3300032052\|Ga0318506_10407429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300032063\|Ga0318504_10609806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300032064\|Ga0318510_10296675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300032064\|Ga0318510_10405619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300032065\|Ga0318513_10297718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300032180\|Ga0307471_100955488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1024	Open in IMG/M
3300032895\|Ga0335074_10239984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	2148	Open in IMG/M
3300032896\|Ga0335075_11026882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	736	Open in IMG/M
3300033158\|Ga0335077_11000371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300033289\|Ga0310914_10636216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	960	Open in IMG/M
3300033290\|Ga0318519_10446823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	774	Open in IMG/M
3300033548\|Ga0316216_1013390	Not Available	649	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.74%
Host-Associated	Host-Associated	7.34%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.83%
Plants	Host-Associated → Plants	6.42%
Aquatic	Environmental → Aquatic	0.92%
Fungi	Host-Associated → Fungi	0.92%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.67%
Peat	Environmental → Terrestrial → Peat	2.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Roots	Host-Associated → Plants → Roots	0.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.22%
Loam	Environmental → Terrestrial → Soil → Loam	19.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.75%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300012176	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ036 MetaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300024245	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030979	Forest soil microbial communities from France, for metatranscriptomics studies - Site 11 - Champenoux / Amance forest (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033548	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE6	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088857

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_02875112	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MTTSSAPLANLTEVSTPPTPKAEVDELDLALLRALAVDARQSQRALARAM
JGIcombinedJ26739_1006171842	3300002245	Forest Soil	MTIDPAPLAKLAEVSPPPRPEVEVDDFDLALLRALAADSRQSQRALARQ
Ga0066395_103858002	3300004633	Tropical Forest Soil	MTSVSAPLAKLAEVTAPAVPPADLDDLDLALLRALADDARQSQRA
Ga0066388_1028638841	3300005332	Tropical Forest Soil	MTTSSAPLAKLTEVSTQPTPKADVDELDLALLRVLAVDARQSQRALARA
Ga0070709_107930122	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAAISAPLAKLTEVSAPATPPAEVDELDLALLRSLADNARQSQR
Ga0070714_1016665561	3300005435	Agricultural Soil	MTTSSAPLAKLTEVSAPPTPKADVDELDLALLRVLAVDARQSQ
Ga0070711_1009485581	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSSAPLAKLTEVSAPPTPKADLDELDLALLRVLAVDAR
Ga0070698_1011736652	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSSAPLAKLTEVSAPPTPKADLDELDLALLRVLAVDARQSQRALARAIE
Ga0070679_1006303542	3300005530	Corn Rhizosphere	MTSVSAPLAKLAEVTAPAVPPADLDDLDLALLRALADDARQSQ
Ga0070764_107429302	3300005712	Soil	MTINPAPLAKLAEVSPPPRPEVEVDDLDLALLRALAA
Ga0066905_1015967352	3300005713	Tropical Forest Soil	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQR
Ga0066903_1031586361	3300005764	Tropical Forest Soil	MTGPWQMTSSSAPLAKLTEVSAPPTPKADLDELDLA
Ga0074053_119263952	3300006575	Soil	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQRALARAI
Ga0074054_119559491	3300006579	Soil	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQRALARA
Ga0075433_101532193	3300006852	Populus Rhizosphere	MRSSSAPLAKLTEVSTPPTPKAEVDELDLALLRAL
Ga0079219_119780332	3300006954	Agricultural Soil	MTTSSAPLAKLTEVSTQPTPKADVDELDLALLRVLAVDARQ
Ga0099792_109646691	3300009143	Vadose Zone Soil	MATSSAPLAKLTEVAAPSSPKVEVDELDLALLRALATDA
Ga0126380_104987401	3300010043	Tropical Forest Soil	MASISAPLARLSEVCSTAAPRVDLDDLDLALLRALAGDARQSQRALA
Ga0126382_110153082	3300010047	Tropical Forest Soil	MDSVSAPLARLTEVAPPAAPKVEVDDSDLALLRALAADARQSQRAL
Ga0126382_119261941	3300010047	Tropical Forest Soil	MDAVSAPLAGLAEVTSPTSPQVDVDDLDLAMLRALARDARQSQRALARAIK
Ga0126376_109984912	3300010359	Tropical Forest Soil	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQ
Ga0126372_100503101	3300010360	Tropical Forest Soil	MDAVSAPLAGLAEVTSPTSPQVDVDDLDLALLRALARDARQS
Ga0153952_11292532	3300012176	Attine Ant Fungus Gardens	LTTTSAPLARLADVASPTVQKIEVDDLDLTLLRALADDARQSQRALARA
Ga0137383_110976362	3300012199	Vadose Zone Soil	MATVSAPLAKLAEVSSPSTPRVDVDDLDLALLCALATDARQSQRA
Ga0137365_111856951	3300012201	Vadose Zone Soil	MDSVSAPLAGLTEVCPPAAPKVEVDDFDLALLRALASDARQ
Ga0137380_110977011	3300012206	Vadose Zone Soil	MATVSAPLAKLAEVSSPSAPKIEVDDLDLALLRALAVD
Ga0137381_105937492	3300012207	Vadose Zone Soil	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQS
Ga0137371_101787103	3300012356	Vadose Zone Soil	MATSSAPLAKLTEVAAPASPKVTVDELDLALRRALATDARQSHRAL
Ga0137385_107520372	3300012359	Vadose Zone Soil	MATVSAPLAKLAEVSSPSAPKIEVDDLDLALLRALAVDARQSQRGLARKV
Ga0137385_108169572	3300012359	Vadose Zone Soil	MESVSAPLARLTEVTSPAAAQVDVDDFDLALLRALARDARQSQRALA
Ga0157369_101962831	3300013105	Corn Rhizosphere	MESVSAPLAGLADVSGSPAPTAEVDESDLALLSALAEDARQSQRS
Ga0157378_107710062	3300013297	Miscanthus Rhizosphere	MTSSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDAR
Ga0137412_108018861	3300015242	Vadose Zone Soil	MTINPTPLGKLAEVSQPPRPEVEVDDFDLALLRALAADARRSQRALAR
Ga0137409_106971672	3300015245	Vadose Zone Soil	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQRAL
Ga0132255_1008813201	3300015374	Arabidopsis Rhizosphere	MRSSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQ
Ga0187786_100506321	3300017944	Tropical Peatland	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQRALA
Ga0187810_102247162	3300018012	Freshwater Sediment	MTINPAPLAKLAEVSRPPRPEVEVDDLDLALLRALAADSR
Ga0210399_103158631	3300020581	Soil	VARSSGPLAGLAEVVTPTTPKVEVDDLDIALLRELAVDSR
Ga0210395_101209893	3300020582	Soil	VTRISGPLAGLAEVATPTTPKVEVDDLDIALLRELAVDSRQSQRALA
Ga0210401_107044941	3300020583	Soil	MTINPTPLGKLAEVSQPPRPEVEVDDFDLALLRALAADARRSQR
Ga0210404_109150122	3300021088	Soil	MTTVSAPLAKLAEVSSPATPQAEVDDLDLALLRAPATDARQP
Ga0210408_101447803	3300021178	Soil	VARSSGPLAGLAEVVTPTTPKVEVDDLDIALLRELAVDSRQSQRAL
Ga0210396_114938532	3300021180	Soil	MAIDPAPLAKLADVSPPPRPEVEVDDLDLALQRALA
Ga0210389_101280533	3300021404	Soil	MASISAPLAKLTEVASPSTPKAEVDELDLALLRALAADARQSL
Ga0210387_109876492	3300021405	Soil	MTINPTPLGKLAEVSQPPRPEVEVDDFDLALLRALAADARRSQRA
Ga0210387_110633562	3300021405	Soil	VARSSGPLAGLAEVVTPTTPKVEVDDLDIALLRELAVDSRQSQRA
Ga0210386_107676871	3300021406	Soil	MTINPTPLGKLAEVSQPPRPEVEVDDFDLALLRALAADAR
Ga0247695_10297041	3300024179	Soil	MTSVSAPLAKLAEVTAPAVPPADLDDLDLALLRALADDARQSQRALA
Ga0247677_10046403	3300024245	Soil	MTSVSAPLAKLAEVTAPAVPPADLDDLDLALLRALADDA
Ga0179589_100178274	3300024288	Vadose Zone Soil	MTIDPAPLAKLAEVSPPPRPEVEVDDLDLALLRALAADARQ
Ga0207688_109990011	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTVNPAPLAKLAEVSPPSRPEAEVDELDLALLRALAADARQSQRALA
Ga0207699_109652372	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MAAISAPLAKLTEVSAPATPPAEVDELDLALLRSLADNA
Ga0207684_103714552	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MATVSAPLAKLAEVSSPSAPKIEVDDLDLALLRALAVDSRQSQRGL
Ga0207652_102325022	3300025921	Corn Rhizosphere	MTVNPAPLAKLVEVSPPSTPEAEVDELDLALLRALAADARQSQRALARQ
Ga0207652_109725202	3300025921	Corn Rhizosphere	MTSVSAPLAKLAEVTAPAVPPADLDDLDLALLRALADDARQSQRAL
Ga0207646_101715003	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MESVSAPLARLTEVSPPAAQKAEVDDFDLALLRALANDARQSQ
Ga0207678_117216421	3300026067	Corn Rhizosphere	MTTSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQ
Ga0209871_10564632	3300026217	Permafrost Soil	MATISAPLAKLTEVSSPPTPEAGVDDLDLALLHALAV
Ga0209468_10989911	3300026306	Soil	MTSSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQRAL
Ga0209159_11631052	3300026343	Soil	MTSSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAV
Ga0179587_106982172	3300026557	Vadose Zone Soil	MESVSAPLAGLAEVSAPPPPTVEVDEYDLALLRALAQDARQSQRAL
Ga0209530_11660012	3300027692	Forest Soil	MTINPAPLAKLAEVSQPPRPEVEVDDFDLALLRALAGDAR
Ga0209180_107206882	3300027846	Vadose Zone Soil	MATSSAPLARLTEVAAPSSPKVEVDELDLALLRALATDARQSQRALARTV
Ga0209167_106672321	3300027867	Surface Soil	MATSSAPLANLTEVAAPTPPKVEVDELDLALLRALATDARQSQRA
Ga0209275_103728922	3300027884	Soil	MTINPAPLAKLAEVSPPPRPEVEVDDFDLALLRALA
Ga0209006_103874543	3300027908	Forest Soil	MTINPAPLAKLAEVSPPPRPEVEVDDFDLALLRALAADARQSQRAL
Ga0209006_104271901	3300027908	Forest Soil	MTINPAPLAKLAEVSPPPRPEVEVDDFDLALLRAL
Ga0137415_113093862	3300028536	Vadose Zone Soil	MTINPTPLGKLAEVSQPPRPEVEVDDFDLALLRALAADARRSQRALARQ
Ga0308309_105707331	3300028906	Soil	MTINPTPLGKLAEVSPPPRPEVEVDDFDLALLRAL
Ga0302178_103392111	3300030013	Palsa	MTINPAPLAKLAEVSPPPRPEVEVDDFDLALLRALAADS
Ga0311354_106247992	3300030618	Palsa	MTTNPTPLARLAEVSPPSRPEVEVDNLDLALLRAL
Ga0068589_112855151	3300030979	Soil	MATVSAPLARLAEVTSAAPPKVEVDDLDLALLRALATDARQSQ
Ga0302325_114709362	3300031234	Palsa	METAPLATLTEVTAPPVPRIEVDDLDLALLRALATDARQSQRAL
Ga0170819_144636252	3300031469	Forest Soil	MESVSAPLAGLADVSAPPAPTVEVDESDLALLRALAE
Ga0318571_103438242	3300031549	Soil	MATSSAPLAKLTEVAAPSSPKVEVDELDLALLRALATDARQSQ
Ga0318573_106328171	3300031564	Soil	MTTSSAPLAKLTEVSTPPTPKADVDELDLALLRVLADDAR
Ga0318515_100676291	3300031572	Soil	MATSSAPLAKLAEVAAPSPPKVEVDELDLALLRAL
Ga0318555_104065091	3300031640	Soil	MTTSPAPLAKLTEVSAPPTPKADVDELDLALLRVL
Ga0318574_105505572	3300031680	Soil	MATSSAPLAKLTEVAAPSSPKVEVDELDLALLRALAT
Ga0318572_103013661	3300031681	Soil	LTTTSAPFAHLADVTSPSTQKIEVDDLDLTLLRALAVDARQSQR
Ga0318572_106824691	3300031681	Soil	MATSSAPLAKLTEVAAPSPPKVEVDELDLALLRALATDARQSQ
Ga0307476_106370472	3300031715	Hardwood Forest Soil	MTINPAPLAKLAEVSPPPRPEVEVDDFDLALLRALAADSRQSQRALARQI
Ga0306917_110358952	3300031719	Soil	MATSSAPLAKLAEVAAPSPPKVEVDELDLALLRALATDARQSQRA
Ga0306918_102523871	3300031744	Soil	MATSSAPLAKLAEVAAPSPPKVEVDELDLALLRALATDA
Ga0318535_101737122	3300031764	Soil	MTTSPAPLAKLTEVSAPPTPKADVDELDLALLRVLAEDARQS
Ga0318554_103487141	3300031765	Soil	MTGPWQMTSSSAPLAKLTEVSAPPTPKADLDELDLALLRVLS
Ga0318566_105148162	3300031779	Soil	MATSSAPLAKLTEVAAPSSPKVEVDELDLALLRALATDARQSQRALA
Ga0318547_106466151	3300031781	Soil	MTTSSAPLAKLTEVSAPPTPKADVDELDLALLRAL
Ga0318576_102833052	3300031796	Soil	MTTSSAPLAKLTEVSAPPTPKADVDELDLALLRALAVDARQSQRA
Ga0307473_105034991	3300031820	Hardwood Forest Soil	MTSSSAPLAKLTEVSTPPTPKAEVDELDLALLRALAVDARQSQRALARAIE
Ga0306919_108045652	3300031879	Soil	MTGPWQMTSSSAPLAKLTEVSAPPTPKADLDELDLALLRVLSVDA
Ga0306923_101943511	3300031910	Soil	MATSSAPLAKLAEVAAPSPPKVEVDELDLALLRALATD
Ga0310910_103571041	3300031946	Soil	MTTSPAPLAKLTEVSAPPTPKADVDELDLALLRVLAEDAR
Ga0318531_103297022	3300031981	Soil	MATSSAPLAKLTEVAAPSPPKVEVDELDLALLRAL
Ga0306922_109184442	3300032001	Soil	MATSSAPLAKLTEVAAPSSPKVEVDELDLALRRALATDARQSQR
Ga0318562_106082052	3300032008	Soil	MATSSAPLAKLTEVAAPSPPKVEVDELDLALLRALATDARQ
Ga0310911_106769752	3300032035	Soil	MATSSAPLAKLAEVAAPSPPKVEVDELDLALLRALATDARQ
Ga0318506_104074291	3300032052	Soil	MTGPWQMTSSSAPLAKLTEVSAPPTPKADLDELDLALLR
Ga0318504_106098061	3300032063	Soil	MTGPWQMTSSSAPLAKLTEVSAPPTPKADLDELDLALLRVLSVDARQSQRA
Ga0318510_102966752	3300032064	Soil	MTGPWQMTSSSAPLAKLTEVSAPPTPKADLDELDLALLRVLSVDARQSQRALAR
Ga0318510_104056191	3300032064	Soil	MTTSSAPLAKLTEVSTPPTPKADVDELDLALLRVLAVDARQSQRALARAIE
Ga0318513_102977181	3300032065	Soil	MTTSSAPLAKLTEVSAPPTPKADVDELDLALLRALAVDARQSQRALARAIE
Ga0307471_1009554881	3300032180	Hardwood Forest Soil	MTTSSAPLAKLTDVSAPPTPKADVDELDLALLRVLAVDA
Ga0335074_102399841	3300032895	Soil	LGNAQMTSVSTPLAKLTEVSASSTPAVEVDSLDLALLRALTSN
Ga0335075_110268821	3300032896	Soil	MASVSAPLARLAEVTSAARPKVEVDDLDLALLHALA
Ga0335077_110003712	3300033158	Soil	MDSVSVPRSNTANPAPLARLGEVSPPSTPTMDVDDFDLALLRALAGDARQSQRALGRK
Ga0310914_106362162	3300033289	Soil	MTTSPAPLAKLTEVSAPPTPKADVDELDLALLRVLAE
Ga0318519_104468231	3300033290	Soil	MATSSAPLAKLTEVAAPSPPKVEVDELDLALLRALAT
Ga0316216_10133902	3300033548	Roots	MTINPAPLAKLAEVSPPPRPEVEVDDLDLALLRALAADARLS

Hidden Markov Model


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