Metagenome / Metatranscriptome Family F088856

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088856
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	97 residues
Representative Sequence	VNAQLQEIADRIDTTVEELLAFLDSPSGRRLRKYLATGLIISVPLVMRMPWLRRTPIGRLIELGGGAALVVKFAEMIRDWERDQDAAMRPQVIDVPPARPV
Number of Associated Samples	95
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	50.46 %
% of genes near scaffold ends (potentially truncated)	34.86 %
% of genes from short scaffolds (< 2000 bps)	84.40 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.890 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (30.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.780 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.79% β-sheet: 0.00% Coil/Unstructured: 37.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01593	Amino_oxidase	29.36
PF13460	NAD_binding_10	3.67
PF13549	ATP-grasp_5	2.75
PF02541	Ppx-GppA	2.75
PF01402	RHH_1	1.83
PF13561	adh_short_C2	1.83
PF13683	rve_3	1.83
PF06850	PHB_depo_C	0.92
PF01370	Epimerase	0.92
PF00370	FGGY_N	0.92
PF03473	MOSC	0.92
PF03551	PadR	0.92
PF12710	HAD	0.92
PF13607	Succ_CoA_lig	0.92
PF01869	BcrAD_BadFG	0.92
PF07883	Cupin_2	0.92
PF00106	adh_short	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	5.50
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.92
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.92
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.92
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.92
COG4553	Poly-beta-hydroxyalkanoate depolymerase	Lipid transport and metabolism [I]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.89 %
Unclassified	root	N/A	32.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.89 %
Unclassified	root	N/A	32.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.89 %
Unclassified	root	N/A	32.11 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.63 %
Unclassified	root	N/A	32.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	59.63 %
Unclassified	root	N/A	32.11 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	41.28 %
Unclassified	root	N/A	32.11 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	7.34 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	29.36 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7.34 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.83 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.83 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.92 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.36 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	5.50 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.83 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	1.83 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.92 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.36 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	5.50 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	1.83 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.83 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.11 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.36 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	5.50 %
Nocardia panacis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia panacis	1.83 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	1.83 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908044\|A5_c1_ConsensusfromContig77112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	679	Open in IMG/M
2140918007\|ConsensusfromContig123847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300000891\|JGI10214J12806_11845826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1169	Open in IMG/M
3300003987\|Ga0055471_10073766	Not Available	965	Open in IMG/M
3300003994\|Ga0055435_10095638	Not Available	779	Open in IMG/M
3300003996\|Ga0055467_10092111	Not Available	851	Open in IMG/M
3300004006\|Ga0055453_10047504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1163	Open in IMG/M
3300004479\|Ga0062595_100022708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2414	Open in IMG/M
3300005093\|Ga0062594_101349757	Not Available	719	Open in IMG/M
3300005205\|Ga0068999_10111053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300005336\|Ga0070680_100782518	Not Available	822	Open in IMG/M
3300005343\|Ga0070687_100055959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2062	Open in IMG/M
3300005345\|Ga0070692_10552992	Not Available	754	Open in IMG/M
3300005347\|Ga0070668_101482325	Not Available	620	Open in IMG/M
3300005364\|Ga0070673_101169717	Not Available	720	Open in IMG/M
3300005365\|Ga0070688_100135557	Not Available	1666	Open in IMG/M
3300005543\|Ga0070672_100399481	Not Available	1178	Open in IMG/M
3300005544\|Ga0070686_101521280	Not Available	564	Open in IMG/M
3300005615\|Ga0070702_100543696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	861	Open in IMG/M
3300005718\|Ga0068866_11040128	Not Available	584	Open in IMG/M
3300005893\|Ga0075278_1010627	Not Available	1192	Open in IMG/M
3300006576\|Ga0074047_11808272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	817	Open in IMG/M
3300006577\|Ga0074050_12015089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	921	Open in IMG/M
3300006578\|Ga0074059_10007245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2116	Open in IMG/M
3300006578\|Ga0074059_10284173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia panacis	520	Open in IMG/M
3300006603\|Ga0074064_11402578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1143	Open in IMG/M
3300006881\|Ga0068865_101502811	Not Available	603	Open in IMG/M
3300009012\|Ga0066710_101854264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	906	Open in IMG/M
3300009090\|Ga0099827_11127447	Not Available	681	Open in IMG/M
3300009176\|Ga0105242_10479544	Not Available	1178	Open in IMG/M
3300009873\|Ga0131077_10349251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1438	Open in IMG/M
3300010147\|Ga0126319_1233600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	588	Open in IMG/M
3300010391\|Ga0136847_12620130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	607	Open in IMG/M
3300010399\|Ga0134127_11354883	Not Available	782	Open in IMG/M
3300010400\|Ga0134122_12504531	Not Available	565	Open in IMG/M
3300010403\|Ga0134123_13459023	Not Available	511	Open in IMG/M
3300011106\|Ga0151489_1001142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	628	Open in IMG/M
3300012208\|Ga0137376_10616714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	938	Open in IMG/M
3300012354\|Ga0137366_10942139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300012951\|Ga0164300_11089686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300014311\|Ga0075322_1053211	Not Available	888	Open in IMG/M
3300014318\|Ga0075351_1181886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300014326\|Ga0157380_10065633	Not Available	2918	Open in IMG/M
3300014326\|Ga0157380_11983991	Not Available	644	Open in IMG/M
3300015245\|Ga0137409_10593985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	937	Open in IMG/M
3300015245\|Ga0137409_11234919	Not Available	589	Open in IMG/M
3300015371\|Ga0132258_10338029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3719	Open in IMG/M
3300015371\|Ga0132258_12609386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1262	Open in IMG/M
3300015372\|Ga0132256_101735557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300015373\|Ga0132257_102245442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300017944\|Ga0187786_10232344	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300017966\|Ga0187776_10051663	All Organisms → cellular organisms → Bacteria	2341	Open in IMG/M
3300017966\|Ga0187776_10055375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2265	Open in IMG/M
3300018032\|Ga0187788_10041308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1544	Open in IMG/M
3300018032\|Ga0187788_10097231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1061	Open in IMG/M
3300018032\|Ga0187788_10257664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300018032\|Ga0187788_10434459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300018060\|Ga0187765_10639187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300018064\|Ga0187773_10209731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1042	Open in IMG/M
3300018064\|Ga0187773_10410698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	786	Open in IMG/M
3300025552\|Ga0210142_1092525	Not Available	595	Open in IMG/M
3300025580\|Ga0210138_1004532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2543	Open in IMG/M
3300025918\|Ga0207662_10836930	Not Available	650	Open in IMG/M
3300025927\|Ga0207687_11759428	Not Available	531	Open in IMG/M
3300025961\|Ga0207712_10747143	Not Available	857	Open in IMG/M
3300025961\|Ga0207712_11919631	Not Available	530	Open in IMG/M
3300025992\|Ga0208775_1017154	Not Available	564	Open in IMG/M
3300026014\|Ga0208776_1024792	Not Available	516	Open in IMG/M
3300026020\|Ga0208531_1002096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1712	Open in IMG/M
3300026067\|Ga0207678_10532562	Not Available	1026	Open in IMG/M
3300026095\|Ga0207676_10702235	Not Available	980	Open in IMG/M
3300026452\|Ga0256821_1015528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	778	Open in IMG/M
3300027870\|Ga0209023_10028994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4526	Open in IMG/M
3300027882\|Ga0209590_10582391	Not Available	720	Open in IMG/M
3300027915\|Ga0209069_10390395	Not Available	760	Open in IMG/M
3300028784\|Ga0307282_10263421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	829	Open in IMG/M
3300028796\|Ga0307287_10307414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300028799\|Ga0307284_10316218	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300028802\|Ga0307503_10210697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	926	Open in IMG/M
3300028803\|Ga0307281_10097413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	986	Open in IMG/M
3300028807\|Ga0307305_10556097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300028814\|Ga0307302_10336075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	744	Open in IMG/M
3300028819\|Ga0307296_10361349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	793	Open in IMG/M
3300028828\|Ga0307312_10012021	All Organisms → cellular organisms → Bacteria	4785	Open in IMG/M
3300028828\|Ga0307312_10076216	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300028828\|Ga0307312_10178025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1359	Open in IMG/M
3300028885\|Ga0307304_10564599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300030903\|Ga0308206_1143492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	570	Open in IMG/M
3300031170\|Ga0307498_10065081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1032	Open in IMG/M
3300031720\|Ga0307469_12250874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia panacis	531	Open in IMG/M
3300031740\|Ga0307468_101166208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	692	Open in IMG/M
3300031834\|Ga0315290_10985584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	711	Open in IMG/M
3300031949\|Ga0214473_10218682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2198	Open in IMG/M
3300031965\|Ga0326597_10131075	All Organisms → cellular organisms → Bacteria	3016	Open in IMG/M
3300031965\|Ga0326597_10170642	All Organisms → cellular organisms → Bacteria	2579	Open in IMG/M
3300032163\|Ga0315281_11945018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	563	Open in IMG/M
3300032164\|Ga0315283_11365519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	732	Open in IMG/M
3300032164\|Ga0315283_11644486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300032177\|Ga0315276_10810011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	1002	Open in IMG/M
3300032397\|Ga0315287_11569534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	742	Open in IMG/M
3300032401\|Ga0315275_10701145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1126	Open in IMG/M
3300032770\|Ga0335085_12307894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300032829\|Ga0335070_11072727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	742	Open in IMG/M
3300033004\|Ga0335084_10209879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2022	Open in IMG/M
3300033233\|Ga0334722_10022176	All Organisms → cellular organisms → Bacteria	5399	Open in IMG/M
3300033433\|Ga0326726_10203118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1830	Open in IMG/M
3300033550\|Ga0247829_11344071	Not Available	591	Open in IMG/M
3300033760\|Ga0314870_011459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	701	Open in IMG/M
3300034155\|Ga0370498_001030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7724	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.49%
Host-Associated	Host-Associated	15.60%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.14%
Aquatic	Environmental → Aquatic	18.35%
Plants	Host-Associated → Plants	15.60%
Wastewater	Engineered → Wastewater	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.22%
Freshwater	Environmental → Aquatic → Freshwater	11.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.09%
Marine	Environmental → Aquatic → Marine	6.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.50%
Sediment	Environmental → Aquatic → Sediment	0.92%
Peat	Environmental → Terrestrial → Peat	0.92%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.27%
Lake	Environmental → Aquatic → Freshwater → Lake	8.26%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.42%
Loam	Environmental → Terrestrial → Soil → Loam	6.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.27%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.26%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	6.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.60%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	9.17%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	7.34%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.83%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005893	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_202	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025992	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104 (SPAdes)	Environmental	Open in IMG/M
3300026014	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205 (SPAdes)	Environmental	Open in IMG/M
3300026020	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403 (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026452	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4	Environmental	Open in IMG/M
3300027870	Freshwater and sediment microbial communities from Lake Erie, Canada (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033760	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_C	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A5_c1_00030520	2124908044	Soil	EELVAFLDSPTGRRLRKRLATGLILSVPFVMRLPWLRRSPIGKLIELGGGAAIVVKVAELIRDWERSHDGLQPDVIDVPPAQPSGSN
A_all_C_02936600	2140918007	Soil	IATRIDGDVEELLDFLDSPTGRRLRKRLATGLIVSVPLVMRLPGLRRSPVGKLVEVAGGAALVVKLAEMLRDWERSQEDRERRVIDVPPASPS
JGI10214J12806_118458261	3300000891	Soil	VNAQMQEIADRIDTTVDELLAFLDSPSGRRLRKYLATGLIVSVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWERDQDAMTRPQVIDVPPVRPV*
Ga0055471_100737661	3300003987	Natural And Restored Wetlands	MNAQLQEIADRVDSTVDELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA*
Ga0055435_100956382	3300003994	Natural And Restored Wetlands	VNAQLQEIADRIDTTVDELLAFLDSPSGRRFRKVLATGLIISVPLVMRMPWLRRTPLGKLIELGGGAALVVKFAEMIRDWEREQDAATRPQVIDVPPVRPV*
Ga0055467_100921113	3300003996	Natural And Restored Wetlands	AGMNAQLQEIADRVDSTVDELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA*
Ga0055453_100475042	3300004006	Natural And Restored Wetlands	MNAQLRELADRIDSTVDELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA*
Ga0062595_1000227083	3300004479	Soil	MQSQLQEIADRLDATVEEVLAFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVLKLAELIRDWERDHPDGAQPRVIDVPPVPPA*
Ga0062594_1013497572	3300005093	Soil	VNAQLQEIADRIDTTVDELLAYLDSPSGRRLRKYLATGLIVSVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWERDQDAATRPQVIDVPPVRPV
Ga0068999_101110531	3300005205	Natural And Restored Wetlands	MDERLREIAHRLDTTVEELVEFFDSPGGRRLRRWLATGLILSVPLVMRIPWLRRSPLGKLIEVTGGAALLIKVAEVIRDWE
Ga0070680_1007825182	3300005336	Corn Rhizosphere	MQEMADRIDTTVEEMLAFLDSASGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0070687_1000559593	3300005343	Switchgrass Rhizosphere	MQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQVIDVPPVGSV*
Ga0070692_105529922	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VNSRLQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQVIDVPPVGSV*
Ga0070668_1014823252	3300005347	Switchgrass Rhizosphere	MADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0070673_1011697173	3300005364	Switchgrass Rhizosphere	MQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0070688_1001355574	3300005365	Switchgrass Rhizosphere	MQEMADRIDTTVEELLAFLDSPSGQRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0070672_1003994811	3300005543	Miscanthus Rhizosphere	VNARMQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0070686_1015212801	3300005544	Switchgrass Rhizosphere	VNAQLQEIADRIDTTVDELLAYLDSPSGRRLRKYLATGLIVSVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWERDQDAATRPQVIDVPPVRPV*
Ga0070702_1005436961	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEAMAPP
Ga0068866_110401281	3300005718	Miscanthus Rhizosphere	VNARMQEMADRIDTTVEELLAFLDSASGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0075278_10106274	3300005893	Rice Paddy Soil	ELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA*
Ga0074047_118082723	3300006576	Soil	VNARMQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQVIDVPPVSPV*
Ga0074050_120150893	3300006577	Soil	VNAQLQEIADRIDATVDELLAFLDSPAGRRLRKHVATGLILSVPLVMRMPWLKRTPIGRLIEVGGGAALLVKVAELIRDWEREHGDVPQPRVIDVPPVTPA*
Ga0074059_100072454	3300006578	Soil	MQSQLQEIADRVDATVEEVLAFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVMKLAELIRDWERDHPDGAQPHVIDVPPVPPA*
Ga0074059_102841731	3300006578	Soil	MQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQLIDVPPVSPV*
Ga0074064_114025782	3300006603	Soil	MQSQLQEIADRLDATVEEVLAFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVMKLAELIRDWERDHPDGAQPHVIDVPPVPPA*
Ga0068865_1015028111	3300006881	Miscanthus Rhizosphere	VNSRLQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0066710_1018542642	3300009012	Grasslands Soil	VNAQLQEIADRIDASIEDLVSFLDSPSGRRLRRHLATSLIVSVPLVMRIPGLKRSPVGRLIELGGGTVIVVKLAELLRDWERREGAPGETSIG
Ga0099827_111274472	3300009090	Vadose Zone Soil	VNAQLQEIADRIDTSVEELVGFLDSPTGRRLRNRLATGLILSVPLVMRLPWLRRSPIGKLIELGGGAAIVVKIAELIRDWERSHEGSQPNAIDVRPAQPSASS*
Ga0105242_104795443	3300009176	Miscanthus Rhizosphere	MADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQVIDVPPVGSV*
Ga0131077_103492512	3300009873	Wastewater	MNERLQEIADRIDTSSEELLEFLDSPGGRRLRRIVGTGLILSIPLVMRLPWLRASPVGRVIEITGGAALLIKLAEVIRDWERERPTPVVIDLPPAPGRPAA*
Ga0126319_12336002	3300010147	Soil	VQEMADRIDTTVDELLAFLDSPSGRRLRKYAATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQDAMAAPQVIDVPPARPV*
Ga0136847_126201302	3300010391	Freshwater Sediment	VNAQLQEIADRVDTSVEELVAFMDSPSGRRLRKHLATGLILSVPLVMRLPWLRRSPIGKLIELGGGTALVVKLAELIRDWERTQDGVALPAMPELPPA*
Ga0134127_113548831	3300010399	Terrestrial Soil	MQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEAMAPPQVVDVPPVSPL*
Ga0134122_125045311	3300010400	Terrestrial Soil	RIDTTVEELLAFLDSASGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0134123_134590231	3300010403	Terrestrial Soil	MADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQPIDVPPVSPV*
Ga0151489_10011421	3300011106	Soil	ADRLDATVEEVLAFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVMKLAELIRDWERDHPDGAQPHVIDVPPVPPA*
Ga0137376_106167141	3300012208	Vadose Zone Soil	QLQEIADRIDASIEDLVSFLDSPSGRRLRRRLATGLIVSVPLVMRIPGLKRSPVGRLIELGGGTVIVVKLAELLRDWERREGAPGETSIG*
Ga0137366_109421392	3300012354	Vadose Zone Soil	VNPQLQEIADRIDASIEDLVSFLDSPSGRRLRRRLATGLIVSVPLVMRIPGLKRSPVGRLIELGGGTVIVVKLAELLRDWERREDVPGETSMG*
Ga0164300_110896862	3300012951	Soil	EIADRLDATVEEVLAFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVLKLAELIRDWERDHPNAAQPRVIDVPPVPPA*
Ga0075322_10532111	3300014311	Natural And Restored Wetlands	DRVDSTVDELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA*
Ga0075351_11818861	3300014318	Natural And Restored Wetlands	VNERLHEIGERFDTSVEELLAFLDSPGGRRLRRMLATGLILSVPLVMRIPGLRRSPIGRAIEVGGGAAIVVKLAELIRDWERDHADGPQPQVIDVPPVPPSG*
Ga0157380_100656331	3300014326	Switchgrass Rhizosphere	MADRIDTTVEELLAFLDSASGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV*
Ga0157380_119839912	3300014326	Switchgrass Rhizosphere	VNAQLQEIADRIDTTVDELLAYLDSPSGRRLRKYLATGLIVSVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWERDQDAATRP
Ga0137409_105939852	3300015245	Vadose Zone Soil	VILVLEGSVIGARVGRLETMQPQLQEIADRLDATVEEVVAFLDSPSGRRLRKHLATGLIISVPLIMRIPWLRRTPIGRLIEVGGGAALVMKLAELIRDWERDHGDAAQPRVIDVPPVPPA
Ga0137409_112349191	3300015245	Vadose Zone Soil	MNAQLQEIADRIDTSVEELVAFLDSAAGRRLRKRLATGLILSVPFVMRLPWLRRSPIGKLIELGGGAAIVVKVAELIRDWELSHDDVQANVIDVPPAAS*
Ga0132258_103380293	3300015371	Arabidopsis Rhizosphere	MQSQLQEIADRLDATVEEVLTFLDSPSGRRLRKRLATGLIISVPLIMRIPWLKRPPLGRLIEVGGGAALVMKLAELIRDWERDHPDGAQPQVIDVPPVPPA*
Ga0132258_126093862	3300015371	Arabidopsis Rhizosphere	VNEQLREMADRIDATVEELLAYLDSPSGRRLRKYLATGLIVSVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWERDQGAMVPPQVIDVPPVRPV*
Ga0132256_1017355572	3300015372	Arabidopsis Rhizosphere	MQSQLQEIADRLDATVEEVLTFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVMKLAELIRDWERDHPDGAQPQVIDVPPVPPA*
Ga0132257_1022454422	3300015373	Arabidopsis Rhizosphere	LDATVEEVLTFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVMKLAELIRDWERDHPDGAQPQVIDVPPVPPA*
Ga0187786_102323442	3300017944	Tropical Peatland	VIERLHELAERADVTIDELLAFLDAPAGRRLRRYLATALIVSVPLVMRIPGLRRSPIGRLIEVGGGAVVIVKIAELIRDWERREAGADEPTPRVIDVPPASPTA
Ga0187776_100516632	3300017966	Tropical Peatland	MNERLQEIADRVDVTVDELLAFLDSPTGRRLRRYLATALIISVPLVMRIPGLRRSPIGRLIEVGGGAVVIVKIAELIRDWERREADR
Ga0187776_100553753	3300017966	Tropical Peatland	VNERLQEIADRVDVTVDELLAFLDSPAGRRLRRYLATALIISVPLVLRIPGLRRSPIGRLIEVGGGAVVIVKIAELIRDWERREADRPRGRVIDAPPASTS
Ga0187788_100413081	3300018032	Tropical Peatland	VNERLQEIADRVDVTVDELLAFLDSPAGRRLRRYLATALIISVPLVMRIPGLRRSPIGRLIEVGGGAVVIAKIAELIRDWERRDADRPTPRIIDVPPATSTG
Ga0187788_100972312	3300018032	Tropical Peatland	VTVDELLAFLDSPTGRRLRRYLATALIISVPLVMRIPGLRRSPIGRLIEVGGGAVVIVKIAELIRDWERREADRPRGRVIDAPPASTS
Ga0187788_102576641	3300018032	Tropical Peatland	DRVDVTVDELLAFLDSPTGRRLRRYLATALIISVPLVMRIPGLRRSPIGRLIEVGGGAVVIVKIAELIRDWERRDADQPTRRVIDVPPASPSV
Ga0187788_104344591	3300018032	Tropical Peatland	MNERLQEIAERVDVTVDELLAFLDSPTGRRLRRYLATALIISVPLVLRIPGLRRSPIGRLIEVGGGAVVIVKLAELIRDWERRDADQPTRRVIDVPPASPTA
Ga0187765_106391871	3300018060	Tropical Peatland	GSALSPRYPGSVNERLQEIADRVDVTVDELLAFLDSPTGRRLRRYLATALIISVPLVMRIPGLRRSPIGRLIEVGGGAVVIVKLAELIRDWERRDADQPTPRVIDVPPASPGV
Ga0187773_102097312	3300018064	Tropical Peatland	VDVTVDELLAFLDSPAGRRLRRYLATALIISVPLVMRIPGLRRSPIGRLIEVGGGAVVIVKIAELIRDWERRDADQPTRRVIDVPPASPSV
Ga0187773_104106982	3300018064	Tropical Peatland	MNERLQEIADRVDVTVDELLAFLDSPTGRRLRRYLATALIISVPLVMRIPGLRRSPIGRLIEVGGGAVVIVKIAELIRDWERREADRPRGRVIDAPPASTS
Ga0210142_10925251	3300025552	Natural And Restored Wetlands	MNAQLQEIADRVDSTVDELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA
Ga0210138_10045325	3300025580	Natural And Restored Wetlands	VNAQLQEIADRIDTTVDELLAFLDSPSGRRLRKVLATGLIISVPLVMRMPWLRRTPLGKLIELGGGAALVVKFAEMIRDWEREQDAATRPQVIDVPPVRPV
Ga0207662_108369301	3300025918	Switchgrass Rhizosphere	MQEMADRIDTTVEEMLAFLDSASGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQ
Ga0207687_117594281	3300025927	Miscanthus Rhizosphere	VNSRLQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEAMAPPQVV
Ga0207712_107471432	3300025961	Switchgrass Rhizosphere	MGAPVNARMQEMADRIDTTVEELLAFLDSASGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQVIDVPPVGSV
Ga0207712_119196311	3300025961	Switchgrass Rhizosphere	IDATVDELLAYLDSPSGRRLRKYLATGLIVSVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWERDQDAATRPQVIDVPPVRPV
Ga0208775_10171542	3300025992	Rice Paddy Soil	RVDSTVDELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA
Ga0208776_10247921	3300026014	Rice Paddy Soil	GRGTSADPDGGATGCRTTRTRGGAGMNAQLQEIADRVDSTVDELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA
Ga0208531_10020961	3300026020	Rice Paddy Soil	QEIADRVDSTVDELLAFLDSPTGRRLRRYLATGLIVSVPMVMRLPWLKRTPIGKLIELGGGAALLVKVAEVIRDWERDQAGRPRVIDVAPARPA
Ga0207678_105325622	3300026067	Corn Rhizosphere	VNARMQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATAPPQVVDVPPVGSV
Ga0207676_107022352	3300026095	Switchgrass Rhizosphere	VNSRLQEMADRIDTTVEELLAFLDSPSGRRLRKIVATGLIISVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWEREQEATPPQVIDVPPVGSV
Ga0256821_10155282	3300026452	Sediment	MDERLREIAHRLDTTAEELVEFFDSPGGRRLRRWLATGLILSVPFVMRIPWLRRSPLGKLIEVTGGAALLIKVAEVIRDWERTPGPPPTVIDVPPVDA
Ga0209023_100289943	3300027870	Freshwater And Sediment	VNAQLQEIADRVDTSVEELVAFLDSPSGRRLRKHLATGLILSVPLVMRLPWLRRSPIGKLIELGGGTALVVKLAELIRDWERTQDGVALPAMPELPPA
Ga0209590_105823911	3300027882	Vadose Zone Soil	VNAQLQEIADRIDTSVEELVGFLDSPTGRRLRNRLATGLILSVPLVMRLPWLRRSPIGKLIELGGGAAIVVKIAELIRDWERSHEGSQPNAIDVRPAQPSASS
Ga0209069_103903952	3300027915	Watersheds	VNPQLQEIADRIDTSVEELMAFLDSPTGRRLRKRLATGLILSVPLVMRLPWLRRSPIGKLIELGGGAAIVVKVAEMIRDWEHNQEAGKQPNVIDVPPAQPSPSA
Ga0307282_102634211	3300028784	Soil	VNAQLQEIADRIDTSIEDLLAFLDSPSGRRLRKRLATGLIVSVPLVMRIPGLRRSPIGRLIEVGGGTVLVVKVAELIRDWERSDGDRGPTQVIDVPPAQTAG
Ga0307287_103074142	3300028796	Soil	VNAQLQEIADRIDTSVDELLAFLDSPAGRRLRKHLATGLIVSVPLVMRLPWLKRTPIGKLIELGGGAALLVKLAELIRDWERDHGDVTQPLVIDVPPPRPA
Ga0307284_103162181	3300028799	Soil	VNAQLQEIADRIDTSIEDLLAFLDSPSGRRLRKRLATGLIVSVPLVMRIPGLRRSPIGRLIEVGGGTVLVVKVAELIRDWERSDGD
Ga0307503_102106971	3300028802	Soil	VNAQLQEIADRIDTTVEELLAFLDSPSGRRLRKYLATGLIISVPLVMRMPWLRRTPIGRLIELGGGAALVVKFAEMIRDWERDQDAAMRPQVIDVPPARPV
Ga0307281_100974132	3300028803	Soil	MNAQLQEVADRIDATVDELLAFLDSPAGRRLRKHLATGLILSVPLVMRMPWLKRTPIGRLIEVGGGAALLVKVAELIRDWERDHGDVPEPRVIDVPPVTPA
Ga0307305_105560971	3300028807	Soil	VNAQLQEIADRIDTSIEDLLAFLDSPSGRRLRKRLATGLIVSVPLVMRIPGLRRSPIGRLIEVGGGTVLVVKVAELIRDWERSDGNREPTQMIDVPPAETAG
Ga0307302_103360752	3300028814	Soil	MDDSLVGVNSQLQGIADRLDESVEDVLAFLDSPSGRRLRKRLATGLIVSVPLVMRIPGLRRSPIGRLIEVGGGAALVVKVAELIRDWERSEDGARSRQVIDVPSSHPAG
Ga0307296_103613492	3300028819	Soil	MNPQLQGIADRIDTSVDELLAFLDSPAGRRLRKHLATGLILSVPLVMRLPWLKRTPIGKLIELGGGAAILVKVAELIRDWERDHTDVPQPGVIDVPPPHLA
Ga0307312_100120211	3300028828	Soil	QEIADRIDTSIEDLLEFLDSPSGRRLRKRLATGLIVSVPLVMRIPGLRRSPIGRLIEVGGGTVLVVKVAELIRDWERSDGNREPTQMIDVPPAETAG
Ga0307312_100762164	3300028828	Soil	MNPQLQGIADRIDTSVDELLAFLDSPAGRRLRKHLATGLILSVPLVMRLPWLKRTPIGKLIELGGGAAILVKVAELIRDWERDHTDVPQPAVIDVPPPHLA
Ga0307312_101780252	3300028828	Soil	MNAQLQEIAGRIDTSVEELLAFLDSPTGRRLRKHLATGLILSIPLVMRLPWLKRTPIGKLIELGGGAALVVKLAELIRDWERDHGEDHQPSVIDVPPPHPA
Ga0307304_105645991	3300028885	Soil	NAQLQEIADRIDTSIEDLLAFLDSPSGRRLRKRLATGLIVSVPLVMRIPGLRRSPIGRLIEVGGGTVLVVKVAELIRDWERSDGDRGPTQVIDVPPAQTAG
Ga0308206_11434922	3300030903	Soil	QEVSDRIDASVDELLAFLDSPAGRRLRKHLATGLIVSVPLVMRMPWLKRTPLGKLIELGGGAALLVKVAELIRDWERDHGDIAAPRVIDVPPPRPA
Ga0307498_100650812	3300031170	Soil	MQSQLQEIADRLDATVEEVLAFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVMKLAELIRDWEREHGEGAQPQVIDVPPVPPV
Ga0307469_122508741	3300031720	Hardwood Forest Soil	PRRSRPAVGRLKAMQSQLQEIADRLDATVEEVLAFLDSPSGRRLRKRLATGLIISVPVIMRIPWLRRTPLGRLIEVGGGAALVLKLAELIRDWERDHPDGAQPRVIDVPPVPPA
Ga0307468_1011662082	3300031740	Hardwood Forest Soil	VNEQLQEMADRIDATVDELLAYLDSPSGRRLRKYLATGLIVSVPLVMRMPWLRRTPIGKLIELGGGAALVVKFAEMIRDWERDQGAMVPPQVIDVPPVRPV
Ga0315290_109855842	3300031834	Sediment	MNVQLQEIADRVDTSVEELVAFLDSPSGRRLRKHMATGLILSVPLVMRLPWLRRTPIGKLIELGGGTALVVKLAELIRDWERTQDGVALPAMPELPPA
Ga0214473_102186822	3300031949	Soil	VNTQLQEIADRMDASVEELIAFLDSPSGRRLRKRLATGLILSVPLVMRLPWLRRSPIGKLIELGGGAALVVKIAELIGDWERAQDGVAQPGALPAPPA
Ga0326597_101310754	3300031965	Soil	VPVNAQLQELADRVDASVEDLIAFLDSPSGRRLRNRLSTGLILSVPLVMRLPWLRRSPIGKLIELGGGAAIVVKVAELIRDWERSQDAATQPVALEIPPA
Ga0326597_101706422	3300031965	Soil	MGRLVPVNAQLQELADRVDASVEDLIAFLDSPSGRRLRNRLSTGLILSVPLVMRLPWLRRSPIGKLIELGGGTAIVVKVAELIRDWERSQGEAATQPVTLEIPPA
Ga0315281_119450182	3300032163	Sediment	VNAQLQEIADRVDTSVEELVAFLDSPSGRRLRKHLATGLILSVPLVMRLPWLRRTPIGKLIELGGGTALVVKLAELIRDWERTQDGVALPAVPELPPA
Ga0315283_113655191	3300032164	Sediment	MNVQLQEIADRVDTSVEELVAFLDSPSGRRLRKHMATGLILSVPLVMRLPWLRRTPIGKLIELGGGTALVVKLAELIRDWERTQDGVAPPAM
Ga0315283_116444862	3300032164	Sediment	VDTSVEELVAFLDSPSGRRLRKHLATGLILSVPLVMRLPWLRRSPIGKLIELGGGTALVVKLAELIRDWERTQDGVAPPAMPELPPA
Ga0315276_108100111	3300032177	Sediment	AFLDSPSGRRLRKHLATGLILSVPLVMRLPWLRRSPIGKLIELGGGTALVVKLAELIRDWERTQDGAALPAMPELPPA
Ga0315287_115695341	3300032397	Sediment	LVAFLDSPSGRRLRKHLATGLILSVPLVMRLPWLRRSPIGKLIELGGGTALVVKLAELIRDWERTQDGVALPAMPELPPA
Ga0315275_107011452	3300032401	Sediment	VDTSVEELVAFLDSPSGRRLRKHLATGLILSVPLVMRLPWLRRSPIGKLIELGGGTALVVKLAELIRDWERTQDGAALPAMPELPPA
Ga0335085_123078941	3300032770	Soil	MNERLQEIAERVDVTVDELLAFLDSPAGRRLRRYLATALIVSVPLVMRIPGLRRSPVGRLIEVGGGAVVLVKIAELIRDWERGETVVDEPTPRIIDVPPATPT
Ga0335070_110727272	3300032829	Soil	MNERLQEIAEHVDVTVEELLAFLDSPTGRRLRRYLATALIVSVPLVMRIPGLRRSPVGRLIEVGGGAVVVVKLAELIRDWERGDTVSDRPHPRVIDVPPATPAA
Ga0335084_102098792	3300033004	Soil	VNERLHELAERADVTIEELLAFLDSPPGRRLRRYLATALIVSVPLVMRIPGLRRSPIGRLIEVGGGAVVVVKIAELIRDWERRDAAQEATTVIDVPPVVTEG
Ga0334722_100221766	3300033233	Sediment	RFDTSVDELLVFFDSPTGRRLRKGLATGLILSVPLVMRIPGLKRSPIGRMIELAGGTAIVVKVAELIRDWEHQQSGQAPPQVIDVPPVEPAG
Ga0326726_102031182	3300033433	Peat Soil	MQSQLQEIADRLDATVEEVLAFLDSPSGRRLRKRLATGLIISVPLIMRIPWLRRTPLGRLIEVGGGAALVMKLAELIRDWERDHGDAAQPRVIDVPPVPPA
Ga0247829_113440711	3300033550	Soil	MNEQLREIADRIDTTVEELLAFLDSPSGRRLRRYLATGLIISVPLVMRMPWLRRTPAGRLIELGGGAALVVKFAEMIRDWEREEDAATHPQVIDVPPAPPA
Ga0314870_011459_2_259	3300033760	Peatland	ELLAFLDSPAGRRLRRYLATALIISVPLVMRIPGLRRSPIGRLIEVGGGAVVIAKIAELIRDWERRDADRPTPRIIDVPPASPSA
Ga0370498_001030_510_812	3300034155	Untreated Peat Soil	MNAALQEIGDRVDATVDELLEFLDSPSGRRLRRYLANGLILSVPLVMRLPWLKRSPIGKLIELGGGAAILMKVAELVRDWERDRAAEQARVVIDVPPRPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088856

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences