Metagenome / Metatranscriptome Family F088850

Basic Information
Family ID	F088850
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	49 residues
Representative Sequence	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAARWKHK
Number of Associated Samples	100
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.50 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	81.65 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (96.330 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.349 % of family members)
Environment Ontology (ENVO)	Unclassified (25.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.615 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.49% β-sheet: 16.33% Coil/Unstructured: 59.18%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13505	OMP_b-brl	24.77
PF00565	SNase	24.77
PF01435	Peptidase_M48	7.34
PF03733	YccF	2.75
PF03992	ABM	2.75
PF03401	TctC	1.83
PF07883	Cupin_2	1.83
PF00196	GerE	1.83
PF14833	NAD_binding_11	0.92
PF13488	Gly-zipper_Omp	0.92
PF13744	HTH_37	0.92
PF00903	Glyoxalase	0.92
PF13649	Methyltransf_25	0.92
PF00490	ALAD	0.92
PF03446	NAD_binding_2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3304	Uncharacterized membrane protein YccF, DUF307 family	Function unknown [S]	2.75
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.83
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.33 %
Unclassified	root	N/A	3.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.33 %
Unclassified	root	N/A	3.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.33 %
Unclassified	root	N/A	3.67 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	90.83 %
Unclassified	root	N/A	3.67 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	88.99 %
Unclassified	root	N/A	3.67 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	36.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	31.19 %
Unclassified	root	N/A	3.67 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.70 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	18.35 %
Unclassified	root	N/A	3.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.75 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.70 %
Unclassified	root	N/A	3.67 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.75 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	1.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.83 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.70 %
Unclassified	root	N/A	3.67 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.75 %
unclassified Methylovirgula	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula	1.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.83 %
Candidatus Afipia apatlaquensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Candidatus Afipia apatlaquensis	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.70 %
Unclassified	root	N/A	3.67 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.75 %
Methylovirgula sp. 4M-Z18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	1.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.83 %
Candidatus Afipia apatlaquensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Candidatus Afipia apatlaquensis	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_7260_length_1284_cov_7.256230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1316	Open in IMG/M
2170459003\|FZ032L002I306V	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11329660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1175	Open in IMG/M
3300000550\|F24TB_10187561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1038	Open in IMG/M
3300004281\|Ga0066397_10054573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	732	Open in IMG/M
3300004479\|Ga0062595_100710407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300004633\|Ga0066395_10047242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1888	Open in IMG/M
3300005347\|Ga0070668_100236042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1513	Open in IMG/M
3300005436\|Ga0070713_101006737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300005467\|Ga0070706_101858012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300005468\|Ga0070707_101371730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300005536\|Ga0070697_102070066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300005554\|Ga0066661_10143988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1455	Open in IMG/M
3300005559\|Ga0066700_10170613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1487	Open in IMG/M
3300005713\|Ga0066905_100054224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2475	Open in IMG/M
3300005764\|Ga0066903_103442629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	853	Open in IMG/M
3300005764\|Ga0066903_106628490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300005937\|Ga0081455_10304576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1142	Open in IMG/M
3300006038\|Ga0075365_10084331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2156	Open in IMG/M
3300006046\|Ga0066652_100069020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2745	Open in IMG/M
3300006046\|Ga0066652_101777241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300006049\|Ga0075417_10129045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1165	Open in IMG/M
3300006051\|Ga0075364_10655961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	716	Open in IMG/M
3300006577\|Ga0074050_12097865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	964	Open in IMG/M
3300006791\|Ga0066653_10513753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300006847\|Ga0075431_101798571	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300006853\|Ga0075420_100132154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2196	Open in IMG/M
3300006914\|Ga0075436_101339111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300007258\|Ga0099793_10049193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1853	Open in IMG/M
3300007258\|Ga0099793_10407738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300007265\|Ga0099794_10059141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1859	Open in IMG/M
3300009038\|Ga0099829_10620008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	899	Open in IMG/M
3300009098\|Ga0105245_12903458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	531	Open in IMG/M
3300009156\|Ga0111538_11213382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	953	Open in IMG/M
3300010040\|Ga0126308_11173917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	543	Open in IMG/M
3300010041\|Ga0126312_11496055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300010043\|Ga0126380_11053682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	689	Open in IMG/M
3300010048\|Ga0126373_10871543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	964	Open in IMG/M
3300010326\|Ga0134065_10219654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300010366\|Ga0126379_12605397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300010398\|Ga0126383_13529222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300010400\|Ga0134122_10698678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	953	Open in IMG/M
3300010403\|Ga0134123_13306914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	520	Open in IMG/M
3300011106\|Ga0151489_1502318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300011269\|Ga0137392_11042516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300012206\|Ga0137380_10290457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1466	Open in IMG/M
3300012210\|Ga0137378_10438322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1211	Open in IMG/M
3300012212\|Ga0150985_121110760	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300012285\|Ga0137370_10181821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1228	Open in IMG/M
3300012285\|Ga0137370_10369423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	865	Open in IMG/M
3300012361\|Ga0137360_11591706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300012362\|Ga0137361_10113123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2381	Open in IMG/M
3300012362\|Ga0137361_10969890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	769	Open in IMG/M
3300012685\|Ga0137397_11084410	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300012922\|Ga0137394_11589332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300012927\|Ga0137416_10822405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	822	Open in IMG/M
3300012927\|Ga0137416_11389011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Candidatus Afipia apatlaquensis	636	Open in IMG/M
3300012930\|Ga0137407_11937166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300012948\|Ga0126375_10021179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3035	Open in IMG/M
3300012975\|Ga0134110_10047849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1685	Open in IMG/M
3300012985\|Ga0164308_10180694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1589	Open in IMG/M
3300014487\|Ga0182000_10422193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300015371\|Ga0132258_10484783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3089	Open in IMG/M
3300015373\|Ga0132257_103243725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	592	Open in IMG/M
3300016294\|Ga0182041_10017166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4326	Open in IMG/M
3300018074\|Ga0184640_10367175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300018431\|Ga0066655_10022491	All Organisms → cellular organisms → Bacteria	2956	Open in IMG/M
3300018469\|Ga0190270_11998647	Not Available	638	Open in IMG/M
3300018469\|Ga0190270_12062402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	629	Open in IMG/M
3300018482\|Ga0066669_10008775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4994	Open in IMG/M
3300018920\|Ga0190273_11078728	Not Available	671	Open in IMG/M
3300019873\|Ga0193700_1024129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1005	Open in IMG/M
3300020000\|Ga0193692_1095492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300021363\|Ga0193699_10420330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300021363\|Ga0193699_10429894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300025927\|Ga0207687_10110510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2039	Open in IMG/M
3300025936\|Ga0207670_11661796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300026142\|Ga0207698_10108308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2322	Open in IMG/M
3300026490\|Ga0257153_1058396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
3300027875\|Ga0209283_10537579	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300028712\|Ga0307285_10002029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3969	Open in IMG/M
3300028714\|Ga0307309_10050377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	905	Open in IMG/M
3300028809\|Ga0247824_10460517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300028876\|Ga0307286_10056644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1335	Open in IMG/M
3300028880\|Ga0307300_10020087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1758	Open in IMG/M
3300028881\|Ga0307277_10028116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2229	Open in IMG/M
3300031543\|Ga0318516_10042087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2459	Open in IMG/M
3300031547\|Ga0310887_10362538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	843	Open in IMG/M
3300031573\|Ga0310915_10006632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6512	Open in IMG/M
3300031680\|Ga0318574_10062188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1994	Open in IMG/M
3300031682\|Ga0318560_10579280	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031713\|Ga0318496_10346934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	820	Open in IMG/M
3300031723\|Ga0318493_10002117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	7136	Open in IMG/M
3300031740\|Ga0307468_101600678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300031751\|Ga0318494_10802520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300031765\|Ga0318554_10076110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1866	Open in IMG/M
3300031795\|Ga0318557_10000920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8489	Open in IMG/M
3300031796\|Ga0318576_10309236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	746	Open in IMG/M
3300031832\|Ga0318499_10318369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300031832\|Ga0318499_10410605	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300031879\|Ga0306919_10154026	Not Available	1678	Open in IMG/M
3300031894\|Ga0318522_10355796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300031946\|Ga0310910_10074731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2455	Open in IMG/M
3300032010\|Ga0318569_10455347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300032065\|Ga0318513_10000388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11807	Open in IMG/M
3300033289\|Ga0310914_11385890	Not Available	606	Open in IMG/M
3300033290\|Ga0318519_10253726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1018	Open in IMG/M
3300033551\|Ga0247830_10607976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	865	Open in IMG/M
3300034384\|Ga0372946_0630190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	518	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.24%
Host-Associated	Host-Associated	13.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.32%
Plants	Host-Associated → Plants	13.76%
Aquatic	Environmental → Aquatic	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.34%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.59%
Roots	Host-Associated → Plants → Roots	1.83%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.23%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.10%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.59%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088850

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_02530910	2140918013	Soil	MKIIEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRKSQRAARWKHKKF
E4A_04307740	2170459003	Grass Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRV
ICChiseqgaiiFebDRAFT_113296601	3300000363	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTQDSTRWKHRNYRGSVQ
F24TB_101875611	3300000550	Soil	MKIVEIVPRARTKLYGTLVAKEAAIRKSGRGTYVRVGRKSQRAARWKHK
Ga0066397_100545731	3300004281	Tropical Forest Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAARWKHK
Ga0062595_1007104071	3300004479	Soil	MKTVEIVPRARARLYGTLVAKEAAIRKGGRGTYVRVGRKTQDATRWKHR
Ga0066395_100472421	3300004633	Tropical Forest Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAARWKHKKFKG
Ga0070668_1002360423	3300005347	Switchgrass Rhizosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQLKRA
Ga0070713_1010067371	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQL
Ga0070706_1018580121	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAARWKHKKFKGTLQL
Ga0070707_1013717301	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAARWKHKKFSGTL
Ga0070697_1020700662	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKTVEIVPRARARLYGTLVAKQDAIRKSGRGTYVRVGRKSQRAA
Ga0066661_101439883	3300005554	Soil	MKTVEIVPRARARLYGTLVAKEAAIRKGGRGTYVRVGRKTQD
Ga0066700_101706131	3300005559	Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVG
Ga0066905_1000542241	3300005713	Tropical Forest Soil	MKIVEIVPRARAHLYGTLVAKEAAIRKSGRGTYVRVGRKSQRAARWKHKKFKGSL
Ga0066903_1034426292	3300005764	Tropical Forest Soil	MKLIEIIPRHRAHLYGTLVAKEASIRKGGRGTYVRVGRKLSNSTRW
Ga0066903_1066284902	3300005764	Tropical Forest Soil	MKIVEIVPRARARLYGTLVAKEAAIRKGGRGTYVRVGRASQHAARW*
Ga0081455_103045763	3300005937	Tabebuia Heterophylla Rhizosphere	MKVVEIVPRARTRLYGMLVAKEAAIRKGGRGTYVRVGRKRKDAARWKH
Ga0075365_100843311	3300006038	Populus Endosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKRKDAARWKHR
Ga0066652_1000690203	3300006046	Soil	MKIIEIVPRARKHLYGTLVAKEAAIRKSGRGTYVRVGRKSQRAARWKHKKFKGTL
Ga0066652_1017772412	3300006046	Soil	MKIVEIVPRARSKLYGTLVAKEAAIRKSGRGTYVRVGRKSQ
Ga0075417_101290453	3300006049	Populus Rhizosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVG
Ga0075364_106559611	3300006051	Populus Endosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKRKDAARWKHRNY
Ga0074050_120978652	3300006577	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGS
Ga0066653_105137531	3300006791	Soil	MKIIEIVPRARKHLYGTLVAKEAAIRKSGRGTYVRVGRKSQRAA
Ga0075431_1017985712	3300006847	Populus Rhizosphere	LKIVEIVPRPRARLFGTLVAKEAAIRKNGRGTYTRVGRKSANAARWRH
Ga0075420_1001321543	3300006853	Populus Rhizosphere	MKIVEIVPRARTKLYGTLVDKQAAIHKSGRGTYVRVGRKTQRAARWKHKKFKGTL
Ga0075436_1013391112	3300006914	Populus Rhizosphere	MKIIEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRKSQRA
Ga0099793_100491933	3300007258	Vadose Zone Soil	MKIVEIVPRARTRLYGTLVAKEAEIRKSGRGTYVRVGRKSQHAARWKHKKFSGTLQLK
Ga0099793_104077381	3300007258	Vadose Zone Soil	MKTVEIVPRARTRLYGTLVAKEAAIRKGGRGTYVRVGRKTQDATRWKHKNYTGSVELKRGAA
Ga0099794_100591413	3300007265	Vadose Zone Soil	MKTVEIVPRARTRLYGTLVAKEAAIRKGGRGTYVRVGRKTQDATRWKH
Ga0099829_106200081	3300009038	Vadose Zone Soil	MKIVEIVPRARTRLYGTLVAKEAEIRKSGRGTYVRVGRKSQHAARWKHKKF
Ga0105245_129034582	3300009098	Miscanthus Rhizosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKH
Ga0111538_112133821	3300009156	Populus Rhizosphere	MKVVEIVPRARTRLYGMLVAKEAAIRQGGRGTYVRVGRKRKDAARWKHRNYRGSVDLKRG
Ga0126308_111739172	3300010040	Serpentine Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWK
Ga0126312_114960552	3300010041	Serpentine Soil	MKIVEIVPRARTKLYGTLVAKEAAIRKSGRGTYVRVGR
Ga0126380_110536822	3300010043	Tropical Forest Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVR
Ga0126373_108715432	3300010048	Tropical Forest Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAARWKHKKF
Ga0134065_102196542	3300010326	Grasslands Soil	MKIIEIVPRARKHLYGTLVAKEAAIRKSGRGTYVRVGRKSQRAARWK
Ga0126379_126053972	3300010366	Tropical Forest Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAARWKHKKFKGTLQLS
Ga0126383_135292222	3300010398	Tropical Forest Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQRATQWKHKKF
Ga0134122_106986781	3300010400	Terrestrial Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATR
Ga0134123_133069141	3300010403	Terrestrial Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRK
Ga0151489_15023182	3300011106	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQLKRAASEVVTAKVQ
Ga0137392_110425162	3300011269	Vadose Zone Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRKSQ
Ga0137380_102904571	3300012206	Vadose Zone Soil	MKVVEIVPRARARLYGTLVAKEAAIRKGGRGTYVRVGRKSQHAARWKHKKFKGTL
Ga0137378_104383221	3300012210	Vadose Zone Soil	MKIVEIVPRARSKLYGTLVAKEAAIRKSGRGTYVRVGRKSQRAARWKHKKFKGT
Ga0150985_1211107601	3300012212	Avena Fatua Rhizosphere	MKIVEIMPREHARLFDVLVTKEAAIRKKGRGTYERVGPKTAGSARWRKKE
Ga0137370_101818211	3300012285	Vadose Zone Soil	MKIVEIVPRARSKLFGTLVAKEAAIRKSGRGTYVRVGRKSQR
Ga0137370_103694232	3300012285	Vadose Zone Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRTSQRAARWKHKKFKGTLQLN
Ga0137360_115917061	3300012361	Vadose Zone Soil	MKTVEIVPRARARLYGTLVAKEAAIRKGGRGTYVRVGRKSQRAARWKHKKFKGTLQ
Ga0137361_101131233	3300012362	Vadose Zone Soil	MKTVEIVPRARTRLYGTLVAKEAAIRKGGRGTYVRVGRKTQDATRWKHKNYTGSVELKRG
Ga0137361_109698902	3300012362	Vadose Zone Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKGGRGTYVRVGRKTQDSTRWKHRNYTGSVELKRG
Ga0137397_110844102	3300012685	Vadose Zone Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTQDSTRWKHRN
Ga0137394_115893322	3300012922	Vadose Zone Soil	MKIVEIVPRARARLFGTLVAKEAAIRKSGRGTYVRVGRKT
Ga0137416_108224051	3300012927	Vadose Zone Soil	MKIVEIVPRARTRLYGTLVAKEAEIRKSGRGTYVRVGRKSQHAARWKHKKFSGTLQ
Ga0137416_113890111	3300012927	Vadose Zone Soil	MKIVEIVPRDRAHLYGTLVAREASIRKKGRGTYMRVGRKTSDAARWRHKMYRGSVQLKR
Ga0137407_119371661	3300012930	Vadose Zone Soil	MKTVEIVPRARARLYGTLVAKEAAIRKGGRGTYVRVGR
Ga0126375_100211791	3300012948	Tropical Forest Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSEHAARWKHKK
Ga0134110_100478493	3300012975	Grasslands Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRTSQRAARW
Ga0164308_101806943	3300012985	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQLKR
Ga0182000_104221931	3300014487	Soil	MKIIEIVPRGRTKLYGTLVDKQAAIHKSGRGTYVRV
Ga0132258_104847831	3300015371	Arabidopsis Rhizosphere	MKIIEIVPRARKHLYGTLVAKEAAIRKSGRGTYVRVGRKSQRA
Ga0132257_1032437251	3300015373	Arabidopsis Rhizosphere	MKVVEIVPRARTRLYGMLVAKEAAIRQGGRGTYVRVGRKRKDAARWKHRNYRGSVDLKR
Ga0182041_100171661	3300016294	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKS
Ga0184640_103671751	3300018074	Groundwater Sediment	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQ
Ga0066655_100224914	3300018431	Grasslands Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRTS
Ga0190270_119986471	3300018469	Soil	VKIVEIVPRPRSRLFGTLVAKEAAIRKNGRGTYTRVGRKSATAARWRHKKYGGS
Ga0190270_120624022	3300018469	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKT
Ga0066669_100087756	3300018482	Grasslands Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRTSQRAARWKHKKFKGTLQLNRD
Ga0190273_110787281	3300018920	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDAT
Ga0193700_10241293	3300019873	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGR
Ga0193692_10954922	3300020000	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTQDATRWK
Ga0193699_104203301	3300021363	Soil	MKVVEIVPRERTRLDGMLVAKEAAIRKGGRGTYVRVGRKTQDSTRWKHRNYR
Ga0193699_104298942	3300021363	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTQDSTRWKHRNYRGSVQLKR
Ga0207687_101105101	3300025927	Miscanthus Rhizosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVRKTK
Ga0207670_116617962	3300025936	Switchgrass Rhizosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRV
Ga0207698_101083084	3300026142	Corn Rhizosphere	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVR
Ga0257153_10583961	3300026490	Soil	MKIVEIVPRARTRLYGTLVAKEAAIRKSGRGTYVRVGRKSQH
Ga0209283_105375792	3300027875	Vadose Zone Soil	VKIVEIVPHQRARLYGTLVAKEASIRKKGRGTYIRVGRKTSGSARWRHKMYTG
Ga0307285_100020296	3300028712	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQLKRAASEV
Ga0307309_100503772	3300028714	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQLKRAAASEVVT
Ga0247824_104605172	3300028809	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQLKRAAS
Ga0307286_100566442	3300028876	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTQDSTRWKHRNYRGSVQLKRG
Ga0307300_100200871	3300028880	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTQDSTRWKHRNYRGSVQLKRGASEV
Ga0307277_100281161	3300028881	Soil	MKIVEIVPRARARLFGTLVAKEAAIRKSGRGTYVRVGRKTQAAARWK
Ga0318516_100420873	3300031543	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQH
Ga0310887_103625382	3300031547	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNY
Ga0310915_100066321	3300031573	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRASQHAARWKHKKFKGSLALSRD
Ga0318574_100621883	3300031680	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKGGRGTYVR
Ga0318560_105792801	3300031682	Soil	VKVVEITPHERTRLYGMLVAKQAAIQKNGRGTYVR
Ga0318496_103469341	3300031713	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRASQHAARWKHK
Ga0318493_100021171	3300031723	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAA
Ga0307468_1016006781	3300031740	Hardwood Forest Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQLK
Ga0318494_108025202	3300031751	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYMRVGRKSQHAARWKHKKFKGTLQLSRGASE
Ga0318554_100761101	3300031765	Soil	MKIVEIVPRARARLFGTLVAKEAAIRKSGRGTYVRVGRKSQHAARWKHKKFK
Ga0318557_100009201	3300031795	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAAR
Ga0318576_103092362	3300031796	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKGGRGTYVRVGRKTQDATRWKHKNY
Ga0318499_103183691	3300031832	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRASQHAARWKHKKFKGSLALSRDASE
Ga0318499_104106052	3300031832	Soil	VKVVEITPHERTRLYGMLVAKQAAIQKNGRGTYVRVGRAS
Ga0306919_101540261	3300031879	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRAS
Ga0318522_103557961	3300031894	Soil	MKTVEIVPRARARLYGTLVAKEAAIRKGGRGTYVRVGRKTQDATRWKHK
Ga0310910_100747311	3300031946	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQ
Ga0318569_104553471	3300032010	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRASQHAARW
Ga0318513_100003881	3300032065	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRV
Ga0310914_113858901	3300033289	Soil	MKLIEIMPRNRARLYGTLVAKEASIRKGGRGTYVRVGRKTANASRWKHKMYGGSVLLR
Ga0318519_102537261	3300033290	Soil	MKIVEIVPRARARLYGTLVAKEAAIRKSGRGTYVRVGRKSQHAARW
Ga0247830_106079762	3300033551	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTK
Ga0372946_0630190_388_516	3300034384	Soil	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDA

Hidden Markov Model


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